BAC Information

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BAC

Clone NameB6Ng01-054J11
Chromosome11 (Build37)
Map Location 77,231,897 - 77,385,663
singlet/doubletdoublet
Overlap geneSsh2, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1
Upstream geneAbr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, LOC544800
Downstream geneLOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054J11.bB6Ng01-054J11.g
ACCDH877293DH877294
length1,1231,101
definitionDH877293|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J11, 5' end.DH877294|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,231,897 - 77,233,028)(77,384,550 - 77,385,663)
sequence
gaattcagataccagtgctcatgtaaaagccaggcacagtgtttatctga
aaccttagtgaggcagagaattggggaaaaaaagtaaagtaacatgccag
acaggcaaatccccagagttggatagctcaccagtctagccaagtctagc
tccgggttcaatgagatgctatggccattaattaggtagacatcaataga
ggaagacacacaacattgacatctggcctacctgagcacacatatacaca
tgtacacacaaatctgcaatgcacaaacactcataccacacatacacaac
aaataaatttctgcttcacattctagtgcctgttctatgatagaagcccc
ggatacatagaaggcaagcaaagcaagagtgaataatccaggaaataatc
taaacctacataacagaagtgaatcctcattgtcactgaacaattacctt
tcttaatatttcatgaagtaactgaggtgggacagttttagatgtgttta
taccacatttatagatagttcacagcatagttcacaggtgaatttttatg
gaaaacttaatgatcccctttgactaatactcagaagcagttagcctatc
tattcccatgcatagagtagaatgacagtgcttttcagatatattttgaa
gaggaagacaaagcagccttaattcaagtaataaccgcagatcaagaatt
gatgttgactagtaattgttctgttaacttttttgaggaatattgaactg
aaagtcatataagaaaaatattagcgatgaatcaaagcagtattttgacc
aggtgcttccttaaccagacaaagagtactatagtctcccgtttctatat
gtactatagtctcccgtttctatatgtagccattgtatctggagcaacta
acactgagtatattatagctgcagcagtctataagtatgattgtaaagag
tgaatttccaatgaagagagtatgcctggaatctctggagtgcaattgaa
tttttctgagcatttgcctatttgagtaaaagaaaacatcttagggactg
acagaatgtcaggtaaatgtttgctgcccagcatagagacttattccatc
caaatatctacttaaacaacaca
gaattcaggacctttggaagagctcttaactgctgagccatctttctagc
ccgactgtccaatttctaaaagaaacattaaaggttaggtttcagtttta
tggataggccttgtgtcttcctttgcatttcaggtagaaaaacaaaaaca
aaaacctaaaaactgacagtgtttgttgctcatggtaaaatttagtactt
aaaagaaatattagaattttgtaatataaccccgctctgggatggtcttt
ttgaaatgctgttacatgattgtgacaaatggtgtgaatgggtctcgtgt
tttctgaacactgataaatacatatctaccttttaatttgtttcttactg
taacaatttttatggttataaatgttgcctgggattcaaatcaatgttgt
ttatgttgatggaacttaaagtctcaaactttaagttgattgaatattta
ttgtatgttttaggatggccccagaagtaattttagccatggatgaagga
cagtatgatggcaaagttgatgtatggtctcttggaataacgtgtattga
attaggtgagcattggtttttattattagggattaacttttttggtgttt
tgttttttgtttttttgttttttttgaaacaggatctcactgtgtagcct
tggctggcctacaacttgctctggccaggatggcctgattcatagagctt
catctgccgctgcctcctgaaagttaagaataaaaaattcatgtcaccat
acctagctgaattaagttttgattcagtgttttatttcaattaatatgtt
aaattatgtttttatcttagatttccatttttaattatttattatatatg
tatgggtattttttatctgcatgtatgtctgagtaccatatgaatgcctg
gtgtctagggagatcagagaagcgggtgttggatcctctggagctatagt
tgcagatagttttgtacctccatttgaattttgggaattgaactcagatc
tctgagagcatcagttctcttatccacttgagctatctttcagcctagat
tagggaaaataaattacttaaaccttgcttgatggctgcctagttttata
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_77231897_77233028
seq2: B6Ng01-054J11.b_39_1161

seq1  GAATTCAGATACCAGTGCTCATGTAAAAGCCAGGCACAGTGTTTATCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATACCAGTGCTCATGTAAAAGCCAGGCACAGTGTTTATCTGA  50

seq1  AACCTTAGTGAGGCAGAGAATTGGGGAAAAAAAGTAAAGTAACATGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAGTGAGGCAGAGAATTGGGGAAAAAAAGTAAAGTAACATGCCAG  100

seq1  ACAGGCAAATCCCCAGAGTTGGATAGCTCACCAGTCTAGCCAAGTCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAATCCCCAGAGTTGGATAGCTCACCAGTCTAGCCAAGTCTAGC  150

seq1  TCCGGGTTCAATGAGATGCTATGGCCATTAATTAGGTAGACATCAATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGTTCAATGAGATGCTATGGCCATTAATTAGGTAGACATCAATAGA  200

seq1  GGAAGACACACAACATTGACATCTGGCCTACCTGAGCACACATATACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACACACAACATTGACATCTGGCCTACCTGAGCACACATATACACA  250

seq1  TGTACACACAAATCTGCAATGCACAAACACTCATACCACACATACACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACACAAATCTGCAATGCACAAACACTCATACCACACATACACAAC  300

seq1  AAATAAATTTCTGCTTCACATTCTAGTGCCTGTTCTATGATAGAAGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTCTGCTTCACATTCTAGTGCCTGTTCTATGATAGAAGCCCC  350

seq1  GGATACATAGAAGGCAAGCAAAGCAAGAGTGAATAATCCAGGAAATAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACATAGAAGGCAAGCAAAGCAAGAGTGAATAATCCAGGAAATAATC  400

seq1  TAAACCTACATAACAGAAGTGAATCCTCATTGTCACTGAACAATTACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTACATAACAGAAGTGAATCCTCATTGTCACTGAACAATTACCTT  450

seq1  TCTTAATATTTCATGAAGTAACTGAGGTGGGACAGTTTTAGATGTGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATATTTCATGAAGTAACTGAGGTGGGACAGTTTTAGATGTGTTTA  500

seq1  TACCACATTTATAGATAGTTCACAGCATAGTTCACAGGTGAATTTTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATTTATAGATAGTTCACAGCATAGTTCACAGGTGAATTTTTATG  550

seq1  GAAAACTTAATGATCCCCTTTGACTAATACTCAGAAGCAGTTAGCCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTAATGATCCCCTTTGACTAATACTCAGAAGCAGTTAGCCTATC  600

seq1  TATTCCCATGCATAGAGTAGAATGACAGTGCTTTTCAGATATATTTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCATGCATAGAGTAGAATGACAGTGCTTTTCAGATATATTTTGAA  650

seq1  GAGGAAGACAAAGCAGCCTTAATTCAAGTAATAACCGCAGATCAAGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGACAAAGCAGCCTTAATTCAAGTAATAACCGCAGATCAAGAATT  700

seq1  GATGTTGACTAGTAATTGTTCTGTTAACTTTTTTGAGGAATATTGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGACTAGTAATTGTTCTGTTAACTTTTTTGAGGAATATTGAACTG  750

seq1  AAAGTCATATAAGAAAAATATTAGCGATGAATCAAAGCAGTATTTTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATATAAGAAAAATATTAGCGATGAATCAAAGCAGTATTTTGACC  800

seq1  AGGTGCTTCCTTAACCAGACAAAGAGTACTATAGTCTCCCGTTTCTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTCCTTAACCAGACAAAGAGTACTATAGTCTCCCGTTTCTATAT  850

seq1  GTACTATAGTCTCCCGTTTCTATATGTAGCCATTGTATCTGGAGCAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATAGTCTCCCGTTTCTATATGTAGCCATTGTATCTGGAGCAACTA  900

seq1  ACACTGAGTATATTATAGCTGCAGCAGGTCTATAAGGTATGATTGTAAAG  950
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  ACACTGAGTATATTATAGCTGCAGCA-GTCTATAA-GTATGATTGTAAAG  948

seq1  AGTGAATTTCCAAATGAAGAGAGTATGCCTGGAATCTCTGGAGTGCAATT  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATTTCC-AATGAAGAGAGTATGCCTGGAATCTCTGGAGTGCAATT  997

seq1  GAATTTTTCTGAGCATTTGCCTATTTTGAGTAATAGAAAACATCTTAGGG  1050
      ||||||||||||||||||||||| ||||||||| ||||||||||||| ||
seq2  GAATTTTTCTGAGCATTTGCCTA-TTTGAGTAAAAGAAAACATCTTA-GG  1045

seq1  GACTGACAG-ATGTCAGGTAAATGTTTGCTGCACAAGCATAGAGACTTAT  1099
      ||||||||| |||||||||||||||||||||| | |||||||||||||||
seq2  GACTGACAGAATGTCAGGTAAATGTTTGCTGC-CCAGCATAGAGACTTAT  1094

seq1  TCAATCCAAAATATCTACTTTAAAACACACACA  1132
      || |||| ||||||||||||  ||||| |||||
seq2  TCCATCC-AAATATCTACTT--AAACA-ACACA  1123

seq1: chr11_77384550_77385663
seq2: B6Ng01-054J11.g_66_1166 (reverse)

seq1  ATATAAAAACTA-GCAGACAATCAAAGCAAAAGCTTTAAGTAATTTATTT  49
      |||| ||||||| |||| | ||| ||||  ||| ||||||||||||||||
seq2  ATAT-AAAACTAGGCAG-CCATC-AAGC--AAGGTTTAAGTAATTTATTT  45

seq1  TTCCCCTTAAATCTAGGGCTGAAAAGATGGCTC-AGTGGATAAGAGAACT  98
      |  ||||  |||||| ||||| |||||| |||| ||||||||||||||||
seq2  T--CCCT--AATCTA-GGCTG-AAAGATAGCTCAAGTGGATAAGAGAACT  89

seq1  GGTTGCTCTTCCAGAAGATCTGAGTTCAATTCCCAAAATTCAAATGGAGG  148
       | ||||||  ||| |||||||||||||||||||||||||||||||||||
seq2  -GATGCTCT--CAG-AGATCTGAGTTCAATTCCCAAAATTCAAATGGAGG  135

seq1  TACAAAACTATCTGCAACTATAGCTCCAGAGGATCCAACACCCGCTTCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACTATCTGCAACTATAGCTCCAGAGGATCCAACACCCGCTTCTC  185

seq1  TGGTCTCCCTAGACACCAGGCATTCATATGGTACTCAGACATACATGCAG  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCCCTAGACACCAGGCATTCATATGGTACTCAGACATACATGCAG  235

seq1  ATAAAAAATACCCATACATATATAATAAATAATTAAAAATGGAAATCTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATACCCATACATATATAATAAATAATTAAAAATGGAAATCTAA  285

seq1  GATAAAAACATAATTTAACATATTAATTGAAATAAAACACTGAATCAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAACATAATTTAACATATTAATTGAAATAAAACACTGAATCAAAA  335

seq1  CTTAATTCAGCTAGGTATGGTGACATGAATTTTTTATTCTTAACTTTCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTCAGCTAGGTATGGTGACATGAATTTTTTATTCTTAACTTTCAG  385

seq1  GAGGCAGCGGCAGATGAAGCTCTATGAATCAGGCCATCCTGGCCAGAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCGGCAGATGAAGCTCTATGAATCAGGCCATCCTGGCCAGAGCA  435

seq1  AGTTGTAGGCCAGCCAAGGCTACACAGTGAGATCCTGTTTCAAAAAAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGGCCAGCCAAGGCTACACAGTGAGATCCTGTTTCAAAAAAAAC  485

seq1  AAAAAAACAAAAAACAAAACACCAAAAAAGTTAATCCCTAATAATAAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAAAACAAAACACCAAAAAAGTTAATCCCTAATAATAAAAA  535

seq1  CCAATGCTCACCTAATTCAATACACGTTATTCCAAGAGACCATACATCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTCACCTAATTCAATACACGTTATTCCAAGAGACCATACATCAA  585

seq1  CTTTGCCATCATACTGTCCTTCATCCATGGCTAAAATTACTTCTGGGGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCATCATACTGTCCTTCATCCATGGCTAAAATTACTTCTGGGGCC  635

seq1  ATCCTAAAACATACAATAAATATTCAATCAACTTAAAGTTTGAGACTTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAAACATACAATAAATATTCAATCAACTTAAAGTTTGAGACTTTA  685

seq1  AGTTCCATCAACATAAACAACATTGATTTGAATCCCAGGCAACATTTATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATCAACATAAACAACATTGATTTGAATCCCAGGCAACATTTATA  735

seq1  ACCATAAAAATTGTTACAGTAAGAAACAAATTAAAAGGTAGATATGTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAAAATTGTTACAGTAAGAAACAAATTAAAAGGTAGATATGTATT  785

seq1  TATCAGTGTTCAGAAAACACGAGACCCATTCACACCATTTGTCACAATCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGTTCAGAAAACACGAGACCCATTCACACCATTTGTCACAATCA  835

seq1  TGTAACAGCATTTCAAAAAGACCATCCCAGAGCGGGGTTATATTACAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGCATTTCAAAAAGACCATCCCAGAGCGGGGTTATATTACAAAA  885

seq1  TTCTAATATTTCTTTTAAGTACTAAATTTTACCATGAGCAACAAACACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATATTTCTTTTAAGTACTAAATTTTACCATGAGCAACAAACACTG  935

seq1  TCAGTTTTTAGGTTTTTGTTTTTGTTTTTCTACCTGAAATGCAAAGGAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTTAGGTTTTTGTTTTTGTTTTTCTACCTGAAATGCAAAGGAAG  985

seq1  ACACAAGGCCTATCCATAAAACTGAAACCTAACCTTTAATGTTTCTTTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGCCTATCCATAAAACTGAAACCTAACCTTTAATGTTTCTTTTA  1035

seq1  GAAATTGGACAGTCGGGCTAGAAAGATGGCTCAGCAGTTAAGAGCTCTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGACAGTCGGGCTAGAAAGATGGCTCAGCAGTTAAGAGCTCTTC  1085

seq1  CAAAGGTCCTGAATTC  1114
      ||||||||||||||||
seq2  CAAAGGTCCTGAATTC  1101