BAC Information

Click to search

BAC

Clone NameB6Ng01-054K07
Chromosome11 (Build37)
Map Location 95,708,801 - 95,837,034
singlet/doubletdoublet
Overlap geneLOC100040014, B4galnt2, Igf2bp1
Upstream geneLOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2
Downstream geneLOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054K07.bB6Ng01-054K07.g
ACCDH877333DH877334
length2071,051
definitionDH877333|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K07, 5' end.DH877334|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,836,828 - 95,837,034)(95,708,801 - 95,709,845)
sequence
cttctctgggaaagtgtgtgatatccaagctttacagaatggatttagat
aattccaaatctcttgagccattgagagaaggaaaccatttttttcttga
catattacctctgtaaatggctaatcccacccactgggtgttgcttgttt
gctaattgaactttcccagggtaagtttgcttccagtgtttttgtgtgtg
tgtgttt
gaattccttggagaactgagcatagaaggcttgtgttgtgaatagatgag
agatgatacttgtggggaaaagaacattgcacccagagtcacagaaagga
gaggaagaagaaccatggtgtctggcatgatggcaggtgtcttagttaga
gttttactgctatgaacagacaccatggccaaggcaactcttatcaggac
aacatttaatcggggctggcttatatattcaggggttcagtccattatca
tcaaggcaagaacatggtagcatccaagcaggcatggtgcgggcagagct
gagagttctttattatcacctgaaggctgctagtggaagactcgattcct
ggcagctaggactagggtcataaagcccaggcccacagtgacacacctac
tccacacctcctaatagtgccacttcctgggccaagcatatacaaaccat
catagcatgcaattccagcattggggaaattgacagtttgttttgaggct
agcttgggatacctagtgtacctagtggaactcttgttatatatatcgtc
ttagtcactgttcttttgctgtgaaaaggcaccatggccaataaaagaaa
gcatttagttggtggcttatgctttagagttagccattatcagcatggtg
ggagcatggctgtatacgtggtgctggagcaatagctgggaactttatac
cacgatccacaggcaggaggcagagagcacaggcatcacggcctgatgta
gacttttgaaaccttaaagcccacccctagtgacacatttcctccaatga
ggccacatcttctccaacgaggccacacctcctaatccttctaatctgtt
caactctctggtgaccaagcattcaaatgtatgagcctatgcagctattc
tcaactgttttgttattgttattttcttttcttttgagataggactcact
atgtagctctagacggcctgacttgctatttagatgcctgagagttggga
ctaaagtgtgcgtctgcatgcccagctcgtgttgtatttaacgttttgct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95836828_95837034
seq2: B6Ng01-054K07.b_52_258 (reverse)

seq1  AAACACACACACACAAAAACACTGGAAGCAAACTTACCCTGGGAAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACACACACAAAAACACTGGAAGCAAACTTACCCTGGGAAAGTTC  50

seq1  AATTAGCAAACAAGCAACACCCAGTGGGTGGGATTAGCCATTTACAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCAAACAAGCAACACCCAGTGGGTGGGATTAGCCATTTACAGAGG  100

seq1  TAATATGTCAAGAAAAAAATGGTTTCCTTCTCTCAATGGCTCAAGAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTCAAGAAAAAAATGGTTTCCTTCTCTCAATGGCTCAAGAGATT  150

seq1  TGGAATTATCTAAATCCATTCTGTAAAGCTTGGATATCACACACTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTATCTAAATCCATTCTGTAAAGCTTGGATATCACACACTTTCCC  200

seq1  AGAGAAG  207
      |||||||
seq2  AGAGAAG  207

seq1: chr11_95708801_95709845
seq2: B6Ng01-054K07.g_66_1104

seq1  GAATTCCTTGGAGAACTGAGCATAGAAGGCTTGTGTTGTGAATAGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGAGAACTGAGCATAGAAGGCTTGTGTTGTGAATAGATGAG  50

seq1  AGATGATACTTGTGGGGAAAAGAACATTGCACCCAGAGTCACAGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATACTTGTGGGGAAAAGAACATTGCACCCAGAGTCACAGAAAGGA  100

seq1  GAGGAAGAAGAACCATGGTGTCTGGCATGATGGCAGGTGTCTTAGTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAGAACCATGGTGTCTGGCATGATGGCAGGTGTCTTAGTTAGA  150

seq1  GTTTTACTGCTATGAACAGACACCATGGCCAAGGCAACTCTTATCAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTGCTATGAACAGACACCATGGCCAAGGCAACTCTTATCAGGAC  200

seq1  AACATTTAATCGGGGCTGGCTTATATATTCAGGGGTTCAGTCCATTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAATCGGGGCTGGCTTATATATTCAGGGGTTCAGTCCATTATCA  250

seq1  TCAAGGCAAGAACATGGTAGCATCCAAGCAGGCATGGTGCGGGCAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCAAGAACATGGTAGCATCCAAGCAGGCATGGTGCGGGCAGAGCT  300

seq1  GAGAGTTCTTTATTATCACCTGAAGGCTGCTAGTGGAAGACTCGATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCTTTATTATCACCTGAAGGCTGCTAGTGGAAGACTCGATTCCT  350

seq1  GGCAGCTAGGACTAGGGTCATAAAGCCCAGGCCCACAGTGACACACCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTAGGACTAGGGTCATAAAGCCCAGGCCCACAGTGACACACCTAC  400

seq1  TCCACACCTCCTAATAGTGCCACTTCCTGGGCCAAGCATATACAAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCTCCTAATAGTGCCACTTCCTGGGCCAAGCATATACAAACCAT  450

seq1  CATAGCATGCAATTCCAGCATTGGGGAAATTGACAGTTTGTTTTGAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCATGCAATTCCAGCATTGGGGAAATTGACAGTTTGTTTTGAGGCT  500

seq1  AGCTTGGGATACCTAGTGTACCTAGTGGAACTCTTGTTATATATATCGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGATACCTAGTGTACCTAGTGGAACTCTTGTTATATATATCGTC  550

seq1  TTAGTCACTGTTCTTTTGCTGTGAAAAGGCACCATGGCCAATAAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACTGTTCTTTTGCTGTGAAAAGGCACCATGGCCAATAAAAGAAA  600

seq1  GCATTTAGTTGGTGGCTTATGCTTTAGAGTTAGCCATTATCAGCATGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGTTGGTGGCTTATGCTTTAGAGTTAGCCATTATCAGCATGGTG  650

seq1  GGAGCATGGCTGTATACGTGGTGCTGGAGCAATAGCTGGGAACTTTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGGCTGTATACGTGGTGCTGGAGCAATAGCTGGGAACTTTATAC  700

seq1  CACGATCCACAGGCAGGAGGCAGAGAGCACAGGCATCACGGCCTGATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATCCACAGGCAGGAGGCAGAGAGCACAGGCATCACGGCCTGATGTA  750

seq1  GACTTTTGAAACCTTAAAGCCCACCCCTAGTGACACATTTCCTCCAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGAAACCTTAAAGCCCACCCCTAGTGACACATTTCCTCCAATGA  800

seq1  GGCCACATCTTCTCCAACGAGGCCACACCTCCTAATCCTTCTAATCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATCTTCTCCAACGAGGCCACACCTCCTAATCCTTCTAATCTGTT  850

seq1  CAACTCTCTGGTGACCAAGCATTCAAATGTATGAGCCTATGCAGCTATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCTGGTGACCAAGCATTCAAATGTATGAGCCTATGCAGCTATTC  900

seq1  TCAAACTTGTTTTGTTATTGTTATTTTCCTTTCTTTTGAGATAGGAACTC  950
      ||||   ||||||||||||||||||||| |||||||||||||||| ||||
seq2  TCAA--CTGTTTTGTTATTGTTATTTTCTTTTCTTTTGAGATAGG-ACTC  947

seq1  ACTATGTAGCTCTAGACGGCCTGGAACTTGCTATTTAGATGCCTGAGAGT  1000
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  ACTATGTAGCTCTAGACGGCCTG--ACTTGCTATTTAGATGCCTGAGAGT  995

seq1  TGGGACTAAAAGTGTGCGTCTGCATGCCCAGCTCGTGTTGTATTT  1045
      ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGGACT-AAAGTGTGCGTCTGCATGCCCAGCTCGTGTTGTATTT  1039