BAC Information

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BAC

Clone NameB6Ng01-055H05
Chromosome11 (Build37)
Map Location 49,981,311 - 50,091,777
singlet/doubletdoublet
Overlap geneTbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1
Upstream geneBtnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696
Downstream geneCanx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055H05.bB6Ng01-055H05.g
ACCDH877896DH877897
length959860
definitionDH877896|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H05, 5' end.DH877897|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,090,814 - 50,091,777)(49,981,311 - 49,982,171)
sequence
gaattcaacttgttctcctgctttcctcccagatcctgtacctgctctag
ctacagaagcttatatcttatctagattaaccaggtaaatggaaatttac
atttactagggtctcagcaggaatgtcctattccatcagacacaactgaa
agagaatttcagagtgtgaagcaagaggagagaattgattgtgctgctcc
atcagggtcctgtgttatcgccacccagctcaacattagggatccaggtc
cctggctcagcactttcctttagagagggagactgaagtgagactgaagg
aagcacactgaagtctaacaggcagagatcagctgagcacagtgaaccta
gagcccgggacatggggatggggtaaggaggatgtgcataggctctgtgg
agcaggtgaatgcatccggagacagagtgaactgacatacttccgaggca
gcctgtactcacagtgacttcggaacctaacccctgctgttcttgaggag
agatgaacagctcaggcctctcgttcccaaatggccttttgccatttatt
gtttaagatggggtcttgctttgtagtttcggttagctgtgtgactcctg
cctctatgctgagagagctaagatgactctgtgcctccaagcctgggtat
tgagggtttttttttttccccatctgtttgttttgtatttgaaagaaagt
ctcactatcacctagcatagtcttaagctcccagattcaagcagccatcc
ctcctcagcctttaagtagcaagcagctcggcactgtatggtactttttg
gttttgtatagtgttggagattgaaaccagggctttggatgtgctaagca
aagactccagtgagctgcatcaccagccctgtaccctatgttttgaagca
atccaacaatatcagaagtgaggcctgggggcagagaatggcccacagtt
tagctgctc
gaattcactttgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgcctcccgagtgctgggattaaaagcgtgcaccaccacgcccagcgt
ctttttttcttttgaaaatgagagagtaccccttcgtgtgtggtactggg
gatggagcccagggcctaaagcttgctcaccatgaactctgcccctgagc
tgagtccccagccacagtgttacagggcagagcccagccaagcaggaggg
cagcatggggccctgtaggggctggttctacagaaacacgggtccgacct
gtaaggactcatggtttgtagtcaaaagaatgttctctgcttttttctgg
tgtgtggaagcactgctacaggagcagcaggaaggaagtggaaatgagga
caccccagaaagaagaggtacaagccattccaattggtgatcccaggggc
ggtgggaccttgtgcccacccttgcttgttacattccctctccagtcact
ggaatggcacatgtgtgctctgacaggggctgatggctccgtgcatagcc
tggctaatctgctgccctcatagtgtgcaaccagggctccagactcacag
cagcctctctccagtcttggagaagacaggtttgggcttttcatcgactt
aggtccagctacttccactaacttaggagaaacgtgtgggaatttgaggg
tgtttctaatcactccctaagtgccaggtcattgtgtaatagtgcccaag
taacctcaggtcacagagcagcgcaccctgctaccagccacagcctgctt
tctctcattgacagatggagattaatctctctctctctctctctctctct
ctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50090814_50091777
seq2: B6Ng01-055H05.b_45_1003 (reverse)

seq1  GAGCAGCTAAACTGCTGAGCCACTTCTCCTGCCCCCAGGCCTCACTTCTG  50
      |||||||||||||| || |||| |||| ||||||||||||||||||||||
seq2  GAGCAGCTAAACTG-TGGGCCA-TTCT-CTGCCCCCAGGCCTCACTTCTG  47

seq1  ATATTGTTGGGATTTGCTTCAAAACATAGGTTACAGGGCTGGTGATGCAG  100
      ||||||||||   ||||||||||||||||| |||||||||||||||||||
seq2  ATATTGTTGG--ATTGCTTCAAAACATAGGGTACAGGGCTGGTGATGCAG  95

seq1  CTCACTGGAGTCTTTGCTTAGCACAT-CAAAGCCCTGGTTTCAATCTCCA  149
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCACTGGAGTCTTTGCTTAGCACATCCAAAGCCCTGGTTTCAATCTCCA  145

seq1  ACACTATACAAAACCAAAAAGTACCATACAGTGCCGAGCTGCTTGCTACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATACAAAACCAAAAAGTACCATACAGTGCCGAGCTGCTTGCTACT  195

seq1  TAAAAGGCTGAGGAGGGATGGCTGCTTGAATCTGGGAGCTTAAGACTATG  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAGGCTGAGGAGGGATGGCTGCTTGAATCTGGGAGCTTAAGACTATG  244

seq1  CTAGGTGATAGTGAGACTTTCTTTCAAATACAAAACAAACAGATGGGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGATAGTGAGACTTTCTTTCAAATACAAAACAAACAGATGGGGAA  294

seq1  AAAAAAAAACCCTCAATACCCAGGCTTGGAGGCACAGAGTCATCTTAGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACCCTCAATACCCAGGCTTGGAGGCACAGAGTCATCTTAGCT  344

seq1  CTCTCAGCATAGAGGCAGGAGTCACACAGCTAACCGAAACTACAAAGCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCATAGAGGCAGGAGTCACACAGCTAACCGAAACTACAAAGCAA  394

seq1  GACCCCATCTTAAACAATAAATGGCAAAAGGCCATTTGGGAACGAGAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCATCTTAAACAATAAATGGCAAAAGGCCATTTGGGAACGAGAGGC  444

seq1  CTGAGCTGTTCATCTCTCCTCAAGAACAGCAGGGGTTAGGTTCCGAAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGTTCATCTCTCCTCAAGAACAGCAGGGGTTAGGTTCCGAAGTC  494

seq1  ACTGTGAGTACAGGCTGCCTCGGAAGTATGTCAGTTCACTCTGTCTCCGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGTACAGGCTGCCTCGGAAGTATGTCAGTTCACTCTGTCTCCGG  544

seq1  ATGCATTCACCTGCTCCACAGAGCCTATGCACATCCTCCTTACCCCATCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCACCTGCTCCACAGAGCCTATGCACATCCTCCTTACCCCATCC  594

seq1  CCATGTCCCGGGCTCTAGGTTCACTGTGCTCAGCTGATCTCTGCCTGTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCCGGGCTCTAGGTTCACTGTGCTCAGCTGATCTCTGCCTGTTA  644

seq1  GACTTCAGTGTGCTTCCTTCAGTCTCACTTCAGTCTCCCTCTCTAAAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGTGTGCTTCCTTCAGTCTCACTTCAGTCTCCCTCTCTAAAGGA  694

seq1  AAGTGCTGAGCCAGGGACCTGGATCCCTAATGTTGAGCTGGGTGGCGATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGAGCCAGGGACCTGGATCCCTAATGTTGAGCTGGGTGGCGATA  744

seq1  ACACAGGACCCTGATGGAGCAGCACAATCAATTCTCTCCTCTTGCTTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGACCCTGATGGAGCAGCACAATCAATTCTCTCCTCTTGCTTCAC  794

seq1  ACTCTGAAATTCTCTTTCAGTTGTGTCTGATGGAATAGGACATTCCTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAATTCTCTTTCAGTTGTGTCTGATGGAATAGGACATTCCTGCT  844

seq1  GAGACCCTAGTAAATGTAAATTTCCATTTACCTGGTTAATCTAGATAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTAGTAAATGTAAATTTCCATTTACCTGGTTAATCTAGATAAGA  894

seq1  TATAAGCTTCTGTAGCTAGAGCAGGTACAGGATCTGGGAGGAAAGCAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCTTCTGTAGCTAGAGCAGGTACAGGATCTGGGAGGAAAGCAGGA  944

seq1  GAACAAGTTGAATTC  964
      |||||||||||||||
seq2  GAACAAGTTGAATTC  959

seq1: chr11_49981311_49982171
seq2: B6Ng01-055H05.g_69_928

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAAGCGTGCACCACCACGCCCAGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAAGCGTGCACCACCACGCCCAGCGT  100

seq1  CTTTTTTTCTTTTGAAAATGAGAGAGTACCCCTTCGTGTGTGGTACTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCTTTTGAAAATGAGAGAGTACCCCTTCGTGTGTGGTACTGGG  150

seq1  GATGGAGCCCAGGGCCTAAAGCTTGCTCACCATGAACTCTGCCCCTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCCCAGGGCCTAAAGCTTGCTCACCATGAACTCTGCCCCTGAGC  200

seq1  TGAGTCCCCAGCCACAGTGTTACAGGGCAGAGCCCAGCCAAGCAGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCCAGCCACAGTGTTACAGGGCAGAGCCCAGCCAAGCAGGAGGG  250

seq1  CAGCATGGGGCCCTGTAGGGGCTGGTTCTACAGAAACACGGGTCCGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGGGCCCTGTAGGGGCTGGTTCTACAGAAACACGGGTCCGACCT  300

seq1  GTAAGGACTCATGGTTTGTAGTCAAAAGAATGTTCTCTGCTTTTTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGACTCATGGTTTGTAGTCAAAAGAATGTTCTCTGCTTTTTTCTGG  350

seq1  TGTGTGGAAGCACTGCTACAGGAGCAGCAGGAAGGAAGTGGAAATGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAAGCACTGCTACAGGAGCAGCAGGAAGGAAGTGGAAATGAGGA  400

seq1  CACCCCAGAAAGAAGAGGTACAAGCCATTCCAATTGGTGATCCCAGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGAAAGAAGAGGTACAAGCCATTCCAATTGGTGATCCCAGGGGC  450

seq1  GGTGGGACCTTGTGCCCACCCTTGCTTGTTACATTCCCTCTCCAGTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACCTTGTGCCCACCCTTGCTTGTTACATTCCCTCTCCAGTCACT  500

seq1  GGAATGGCACATGTGTGCTCTGACAGGGGCTGATGGCTCCGTGCATAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGCACATGTGTGCTCTGACAGGGGCTGATGGCTCCGTGCATAGCC  550

seq1  TGGCTAATCTGCTGCCCTCATAGTGTGCAACCAGGGCTCCAGACTCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATCTGCTGCCCTCATAGTGTGCAACCAGGGCTCCAGACTCACAG  600

seq1  CAGCCTCTCTCCAGTCTTGGAGAAGACAGGTTTGGGCTTTTCATCGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTCTCCAGTCTTGGAGAAGACAGGTTTGGGCTTTTCATCGACTT  650

seq1  AGGTCCAGCTACTTCCACTAACTTAGGAGAAACGTGTGGGAATTTGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGCTACTTCCACTAACTTAGGAGAAACGTGTGGGAATTTGAGGG  700

seq1  TGTTTCTAATCACTCCCTAAGTGCCAGGTCATTGTGTAATAGTGCCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAATCACTCCCTAAGTGCCAGGTCATTGTGTAATAGTGCCCAAG  750

seq1  TAACCTCAGGTCACAGAGCAGCGCACCCTGCTACCAGCCACAGCCTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCAGGTCACAGAGCAGCGCACCCTGCTACCAGCCACAGCCTGCTT  800

seq1  TCTCTCATTTGACAGATGGAGATTAATCTCTCTCTCTCTCTCTCTCTCTC  850
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCA-TTGACAGATGGAGATTAATCTCTCTCTCTCTCTCTCTCTCTC  849

seq1  TCTCTCTCTCT  861
      |||||||||||
seq2  TCTCTCTCTCT  860