BAC Information

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BAC

Clone NameB6Ng01-055H24
Chromosome11 (Build37)
Map Location 32,088,303 - 32,225,064
singlet/doubletdoublet
Overlap geneLOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1
Upstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2
Downstream geneSh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055H24.bB6Ng01-055H24.g
ACCDH877928DH877929
length4521,216
definitionDH877928|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H24, 5' end.DH877929|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,224,607 - 32,225,064)(32,088,303 - 32,089,556)
sequence
atgggaagagtattacatgtgaaattatagatagaagcatccgtagggtt
gtggcagttatatcttagcaggacacatgtcaaagatgaaaagaccccca
gaacctaaactaaaatttcgaagagttcgtgggcaaagagccaagtgcat
gctgggtgcctgttacaccgctgttctccttggagctgcgaagttccgag
tcccgccacacgggggtgctcgtcgccttcttatatctccggtagctgca
gtgtcctcctacactcgacccacactgccaccttgttccaaggtcctcaa
gcagacaggacagtgatgggtctaggagggtacagttttgtggggctgtg
ggaagaggggaagaagggggagggagattctccatgttctccccagtttt
tcctgtggtctgggtaagcggacgctgaaggactgccggacactttccac
tc
gaattcccacagacccggagcttctccatccttcctcgggtttctaagta
actgacattaactacacacccaggcaaatggtggggggactgcctagtaa
ccactgcctagggttagtgctatgttttgaaatatttgctgacaattagt
ctcatcaattacatcttacttctttccgtaagggccttgacagtcatggg
gatggtgtgacaggagtatggtaaaaagccccagattcccaaattcttaa
attgccttttgtaaaattttactctttacttgtattcacacctacacaac
acacaaaccttggtgctgttttacgttgactgatttatactgtgtagcag
taaaacctcgggatcaagaaaagaacggtagaagccagggtagtatttat
gcaggtatatatactgaacctatcttcacacacacaaaaagggagggtaa
ttatttaaatgaaagataaaccctatttaactattttgttgttagcttac
taacaaactagaaatctcttctgcctgagaaatgttgactccactgagct
gacttattctaaataacgcgatcactgtttttaaatctccatctgccagc
aggtgaggcagggaactggacggcagggacactcggctctcttggtccta
actagggtgttatgccatggacggtcccgtgagtgaatgctttccctggg
gtcagcattgtgagccttcccaggacaccagctctgagctcacaatgctg
catgcagttcctctctgcgctccatggactctgcgctccatggaccctgc
gcagtagttcgaccgtctcttgcacggtgtcacaggcttggaaatagtcc
tcacactagcattgttcccacgcttgccctttaagagcccttcaaggagc
aagaggacttctgttaggccagtgctttatggctccaaatctgcacaaac
gtgccaactgctcagcttgtttggccttctagtcacatctctgctcacat
gcaagagtatgaagaacaacttgtccccgtcattggtgcatctatctcag
tacgcaaaaagaaactctcaagggcatgttgaactgcttggaacaaaacc
tttctctcagagacatggcttctgggttccattcagaaccttgacttgag
cagaagaacaaactcggatagcacggttcggtatctgtaggcaccatgaa
aatagccacattctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_32224607_32225064
seq2: B6Ng01-055H24.b_48_504 (reverse)

seq1  AGTGGAAAGTGTCCGGCAGTCCTTCCGCATCCGCCTGCCCAGAGCACAGG  50
      ||||||||||||||||||||||||| || ||||| | |||||| ||||||
seq2  AGTGGAAAGTGTCCGGCAGTCCTTCAGCGTCCGCTTACCCAGACCACAGG  50

seq1  AGGAACTCTGGCTGGACACGGAGTCTCTCCCTCCCCCTTCTTCCCCTCTT  100
      |  ||||  ||  | ||| ||||  |||||||||||||||||||||||||
seq2  AAAAACT-GGGGAGAACATGGAGAATCTCCCTCCCCCTTCTTCCCCTCTT  99

seq1  CCCACAGCCCCACAAAACTGTACCCTCCTAGACCCATCACTGTCCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCCCCACAAAACTGTACCCTCCTAGACCCATCACTGTCCTGTCT  149

seq1  GCTTGAGGACCTTGGAACAAGGTGGCAGTGTGGGTCGAGTGTAGGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGGACCTTGGAACAAGGTGGCAGTGTGGGTCGAGTGTAGGAGGAC  199

seq1  ACTGCAGCTACCGGAGATATAAGAAGGCGACGAGCACCCCCGTGTGGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCTACCGGAGATATAAGAAGGCGACGAGCACCCCCGTGTGGCGG  249

seq1  GACTCGGAACTTCGCAGCTCCAAGGAGAACAGCGGTGTAACAGGCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGGAACTTCGCAGCTCCAAGGAGAACAGCGGTGTAACAGGCACCCA  299

seq1  GCATGCACTTGGCTCTTTGCCCACGAACTCTTCGAAATTTTAGTTTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACTTGGCTCTTTGCCCACGAACTCTTCGAAATTTTAGTTTAGGT  349

seq1  TCTGGGGGTCTTTTCATCTTTGACATGTGTCCTGCTAAGATATAACTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGGTCTTTTCATCTTTGACATGTGTCCTGCTAAGATATAACTGCC  399

seq1  ACAACCCTACGGATGCTTCTATCTATAATTTCACATGTAATACTCTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCTACGGATGCTTCTATCTATAATTTCACATGTAATACTCTTCCC  449

seq1  ATGAATTC  458
      ||||||||
seq2  ATGAATTC  457

seq1: chr11_32088303_32089556
seq2: B6Ng01-055H24.g_70_1285

seq1  GAATTCCCACAGACCCGGAGCTTCTCCATCCTTCCTCGGGTTTCTAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACAGACCCGGAGCTTCTCCATCCTTCCTCGGGTTTCTAAGTA  50

seq1  ACTGACATTAACTACACACCCAGGCAAATGGTGGGGGGACTGCCTAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATTAACTACACACCCAGGCAAATGGTGGGGGGACTGCCTAGTAA  100

seq1  CCACTGCCTAGGGTTAGTGCTATGTTTTGAAATATTTGCTGACAATTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCTAGGGTTAGTGCTATGTTTTGAAATATTTGCTGACAATTAGT  150

seq1  CTCATCAATTACATCTTACTTCTTTCCGTAAGGGCCTTGACAGTCATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAATTACATCTTACTTCTTTCCGTAAGGGCCTTGACAGTCATGGG  200

seq1  GATGGTGTGACAGGAGTATGGTAAAAAGCCCCAGATTCCCAAATTCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGTGACAGGAGTATGGTAAAAAGCCCCAGATTCCCAAATTCTTAA  250

seq1  ATTGCCTTTTGTAAAATTTTACTCTTTACTTGTATTCACACCTACACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTTTGTAAAATTTTACTCTTTACTTGTATTCACACCTACACAAC  300

seq1  ACACAAACCTTGGTGCTGTTTTACGTTGACTGATTTATACTGTGTAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACCTTGGTGCTGTTTTACGTTGACTGATTTATACTGTGTAGCAG  350

seq1  TAAAACCTCGGGATCAAGAAAAGAACGGTAGAAGCCAGGGTAGTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTCGGGATCAAGAAAAGAACGGTAGAAGCCAGGGTAGTATTTAT  400

seq1  GCAGGTATATATACTGAACCTATCTTCACACACACAAAAAGGGAGGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTATATATACTGAACCTATCTTCACACACACAAAAAGGGAGGGTAA  450

seq1  TTATTTAAATGAAAGATAAACCCTATTTAACTATTTTGTTGTTAGCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAATGAAAGATAAACCCTATTTAACTATTTTGTTGTTAGCTTAC  500

seq1  TAACAAACTAGAAATCTCTTCTGCCTGAGAAATGTTGACTCCACTGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACTAGAAATCTCTTCTGCCTGAGAAATGTTGACTCCACTGAGCT  550

seq1  GACTTATTCTAAATAACGCGATCACTGTTTTTAAATCTCCATCTGCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATTCTAAATAACGCGATCACTGTTTTTAAATCTCCATCTGCCAGC  600

seq1  AGGTGAGGCAGGGAACTGGACGGCAGGGACACTCGGCTCTCTTGGTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGCAGGGAACTGGACGGCAGGGACACTCGGCTCTCTTGGTCCTA  650

seq1  ACTAGGGTGTTATGCCATGGACGGTCCCGTGAGTGAATGCTTTCCCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGTGTTATGCCATGGACGGTCCCGTGAGTGAATGCTTTCCCTGGG  700

seq1  GTCAGCATTGTGAGCCTTCCCAGGACACCAGCTCTGAGCTCACAATGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCATTGTGAGCCTTCCCAGGACACCAGCTCTGAGCTCACAATGCTG  750

seq1  CATGCAGTTCCTCTCTGCGCTCCATGGACTCTGCGCTCCATGGACCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGTTCCTCTCTGCGCTCCATGGACTCTGCGCTCCATGGACCCTGC  800

seq1  GCAGTAGTTCGACCGTCTCTTGCACGGTGTCACAGGCTTGGAAATAGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGTTCGACCGTCTCTTGCACGGTGTCACAGGCTTGGAAATAGTCC  850

seq1  TCACACTAGCATTGTTCCCACGCTTGCCCTTTAAGAGCCCTTCAAGGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTAGCATTGTTCCCACGCTTGCCCTTTAAGAGCCCTTCAAGGAGC  900

seq1  AAGAGGACTTCTGTTAGGCCAGTGCTTTATGGCTCCAAATCTGCACAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACTTCTGTTAGGCCAGTGCTTTATGGCTCCAAATCTGCACAAAC  950

seq1  GTGGCCAACTGCTCAGCCTGTTTTGGCCTTCTAGGTCACAATCTCTGCTC  1000
      || |||||||||||||| || |||||||||||| ||||| ||||||||||
seq2  GT-GCCAACTGCTCAGCTTG-TTTGGCCTTCTA-GTCAC-ATCTCTGCTC  996

seq1  ACATGCAAGAGTATGAGACACAACCTGTCCCCGTCATTGGGTAGCATCTA  1050
      ||||||||||||||||   ||||| |||||||||||||||   |||||||
seq2  ACATGCAAGAGTATGAAGAACAACTTGTCCCCGTCATTGG--TGCATCTA  1044

seq1  GTCTCAGTACGCAAGAGGACACTCAGAGGGGAATGTGAAGCAGGGCTGGA  1100
       ||||||||||||| | || ||||  | ||| ||||   | |  ||| | 
seq2  -TCTCAGTACGCAAAAAGAAACTCTCAAGGGCATGT--TGAACTGCTTGG  1091

seq1  AACAAACCCTTCCCTCCAGGAGCATGGCCTTCCTGGTGTCTCCATTCCAG  1150
      |||||| |||| |   |||   ||||| ||||  |||   |||||| |||
seq2  AACAAAACCTTTCTCTCAGAGACATGG-CTTCTGGGT---TCCATT-CAG  1136

seq1  ACCCATGGACCTCAGAGCAGAGAGAAAACAAATCTACGGTATTAGCCACC  1200
      | || | ||| |  |||||||   | |||||| || |||   |||   | 
seq2  AACC-TTGACTT--GAGCAGA---AGAACAAA-CT-CGG--ATAG---CA  1173

seq1  CGGTTTCTGGTATTCTGTTAGGGCAAGCCTAGGAAAATAACAGCCACATT  1250
      |||||   |||| |||||   ||||   | | ||||||   |||||||||
seq2  CGGTT--CGGTA-TCTGT--AGGCA---CCATGAAAAT---AGCCACATT  1212

seq1  CTAG  1254
      ||||
seq2  CTAG  1216