BAC Information

Click to search

BAC

Clone NameB6Ng01-056N10
Chromosome11 (Build37)
Map Location 20,998,475 - 21,143,883
singlet/doubletdoublet
Overlap genePeli1, Vps54
Upstream geneActr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
Downstream geneUgp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056N10.bB6Ng01-056N10.g
ACCDH878878DH878879
length1,119998
definitionDH878878|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N10, 5' end.DH878879|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,998,475 - 20,999,608)(21,142,884 - 21,143,883)
sequence
gaattcaccatctctgtcctagaagccatcaactgtcagtaacccttcag
gtctaggggtttaggcccctccatgttggaatgttgactggcttgatctt
gtgcagaaagctgtagctgtggtgagttcatgagcacatctgtcctgtca
agtccagaagatagtttcattctcgtgcttcctggctcctagttctttca
ttctttctgccttctcttctgcagtggtccttgagcctggaggagatagg
tagggtagatgtctcatttttggctgatcacttcactgatcactctttgt
actttgacaaattgtgaatttctgcattaactgccatacactgcacaaaa
gaaacttcgctgattgaggtctgagagctgccctaatctgggcttagaga
tatgaatttagagagcagttcagtactatatcattttagcagaacagtag
ttgtggtttctggaccctatgacctctcaatcataggttgaaataagtga
atcttatccaaatgtttaaacactccgaagaaattaaccattagagagtt
ttaggaaatttatccaacaacagtgtatatgtagatattgttaattttga
aaactcaatgctactttgtactgtagttaatatttccaaacagagaaatg
aaacttatttagatgctttaatgaaagttacatttttcggggctggagag
atggctcagcagttaagagcactgactgctcctccaaaggtcctgagttc
aaatcccaggaaccacatggtggctcacaaccttatataatgagatctga
tgccttctgtgtgtctgaagatacctacagtgtacttataataaataaat
aaatacataaataaattttaaaattacatttttctacttatgtccaataa
gggggaaatactgtcttttcattcatatttttagaatttaatggcagtaa
tcagaatttatgactttaattttatgataaattattattagccgtaaact
atcatgcacatctgtactagaatacttatggattcaggagagaaaactta
gaccatgctacgtttcttcatacttgagaaagggctcatctgatgaaccc
tgcctgactgaagctcaat
gaattcaacatgccttagacaattacatatttaggaatgggggagaattg
tggagtctctaaggctaaaaagatgttaggaaaggaactcacttatctta
aagaaatgagaaataatatttcatcttaattataaagctagaaataattt
aagcacacaaattaaatgatcagatttacccttttgaaaaatcaatgact
acaatacaggggaaaaaagaccaggaaaaaaagcctgatagaaatcttac
aataagccaacctcaggtgctactgaagtcggtctctggagcaaggaact
tcaattattgatgtattaagtggttcttttgagggagggagaaagacggc
agggacagagacaattagtgttttttttctccctaagagctgtcagtcat
tattcattttaccttgctacctctacattgcttttgataagttctacata
ttcctttctaatttgttcttctgaaacaactcttacagagaatgttaaag
tcaacaaagcatcttcaggctaatgctctccccactgaactatttggctc
accagacacagtatcttacaacccataaactcacttacattggcaataag
ttcataatacagtaatcaccaaacacactcactatttgttagatgagaaa
attgaaccccaggaacatttcataatttctctaaagtcacatggacagta
agtaacaaaggtgatcctaccacttttcatcaccaaaaacatcacctaaa
agccaaacccagtggcacaggtctacaaccctagcacttgggaaggagag
atggatcacagcagcaccaaagtatttaaaaattaatttaaaacatcaga
gtcaaaagtgagatccatagaagcagaaatgcgagttgtatataaatatg
aaaatcctggacttttactacatacatacttgcatacataagccattcaa
catttagcttctttctcgataagttaacaggaggtaggggtaggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_20998475_20999608
seq2: B6Ng01-056N10.b_47_1165

seq1  GAATTCACCATCTCTGTCCTAGAAGCCATCAACTGTCAGTAACCCTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCTCTGTCCTAGAAGCCATCAACTGTCAGTAACCCTTCAG  50

seq1  GTCTAGGGGTTTAGGCCCCTCCATGTTGGAATGTTGACTGGCTTGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGGGTTTAGGCCCCTCCATGTTGGAATGTTGACTGGCTTGATCTT  100

seq1  GTGCAGAAAGCTGTAGCTGTGGTGAGTTCATGAGCACATCTGTCCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAAGCTGTAGCTGTGGTGAGTTCATGAGCACATCTGTCCTGTCA  150

seq1  AGTCCAGAAGATAGTTTCATTCTCGTGCTTCCTGGCTCCTAGTTCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGAAGATAGTTTCATTCTCGTGCTTCCTGGCTCCTAGTTCTTTCA  200

seq1  TTCTTTCTGCCTTCTCTTCTGCAGTGGTCCTTGAGCCTGGAGGAGATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGCCTTCTCTTCTGCAGTGGTCCTTGAGCCTGGAGGAGATAGG  250

seq1  TAGGGTAGATGTCTCATTTTTGGCTGATCACTTCACTGATCACTCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGATGTCTCATTTTTGGCTGATCACTTCACTGATCACTCTTTGT  300

seq1  ACTTTGACAAATTGTGAATTTCTGCATTAACTGCCATACACTGCACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGACAAATTGTGAATTTCTGCATTAACTGCCATACACTGCACAAAA  350

seq1  GAAACTTCGCTGATTGAGGTCTGAGAGCTGCCCTAATCTGGGCTTAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCGCTGATTGAGGTCTGAGAGCTGCCCTAATCTGGGCTTAGAGA  400

seq1  TATGAATTTAGAGAGCAGTTCAGTACTATATCATTTTAGCAGAACAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTAGAGAGCAGTTCAGTACTATATCATTTTAGCAGAACAGTAG  450

seq1  TTGTGGTTTCTGGACCCTATGACCTCTCAATCATAGGTTGAAATAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTTCTGGACCCTATGACCTCTCAATCATAGGTTGAAATAAGTGA  500

seq1  ATCTTATCCAAATGTTTAAACACTCCGAAGAAATTAACCATTAGAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCCAAATGTTTAAACACTCCGAAGAAATTAACCATTAGAGAGTT  550

seq1  TTAGGAAATTTATCCAACAACAGTGTATATGTAGATATTGTTAATTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAATTTATCCAACAACAGTGTATATGTAGATATTGTTAATTTTGA  600

seq1  AAACTCAATGCTACTTTGTACTGTAGTTAATATTTCCAAACAGAGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAATGCTACTTTGTACTGTAGTTAATATTTCCAAACAGAGAAATG  650

seq1  AAACTTATTTAGATGCTTTAATGAAAGTTACATTTTTCGGGGCTGGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATTTAGATGCTTTAATGAAAGTTACATTTTTCGGGGCTGGAGAG  700

seq1  ATGGCTCAGCAGTTAAGAGCACTGACTGCTCCTCCAAAGGTCCTGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGCAGTTAAGAGCACTGACTGCTCCTCCAAAGGTCCTGAGTTC  750

seq1  AAATCCCAGGAACCACATGGTGGCTCACAACCTTATATAATGAGATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAGGAACCACATGGTGGCTCACAACCTTATATAATGAGATCTGA  800

seq1  TGCCTTCTGTGTGTCTGAAGATACCTACAGTGTACTTATAATAAATAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTGTGTGTCTGAAGATACCTACAGTGTACTTATAATAAATAAAT  850

seq1  AAATACATAAATAAATTTTAAAATTACATTTTTCTACTTATGTCCAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAAATAAATTTTAAAATTACATTTTTCTACTTATGTCCAATAA  900

seq1  GGGGGAAATACTGTCTTTTCATTCATATTTTTAGAATTTAATGGCAGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAATACTGTCTTTTCATTCATATTTTTAGAATTTAATGGCAGTAA  950

seq1  TCAGAATTTATGAACTTTAATTTTATGATAAATTATGTATTAGCCGTTAA  1000
      |||||||||||| ||||||||||||||||||||||| ||||||||||  |
seq2  TCAGAATTTATG-ACTTTAATTTTATGATAAATTAT-TATTAGCCGT--A  996

seq1  AACTATACATGCACATCTGTACTAAGAATACTTTATGGATTCAGGAAGAC  1050
      |||||| |||||||||||||||| ||||||| ||||||||||||| ||| 
seq2  AACTAT-CATGCACATCTGTACT-AGAATAC-TTATGGATTCAGG-AGAG  1042

seq1  AAACTTTAGACCATGGCTACGTTCCTTCATAACTTTGAG-AAGGGCTCAG  1099
      |||  ||||||||| |||||||| |||||||   ||||| ||||||||| 
seq2  AAAACTTAGACCAT-GCTACGTTTCTTCATA--CTTGAGAAAGGGCTCA-  1088

seq1  TGCTGATGAACGCTGCCCTGACTTGAAGCCTCAAT  1134
        ||||||||| ||| |||||| ||||| ||||||
seq2  -TCTGATGAACCCTG-CCTGAC-TGAAG-CTCAAT  1119

seq1: chr11_21142884_21143883
seq2: B6Ng01-056N10.g_71_1068 (reverse)

seq1  ATCCCCTACCCCTACCTCCTGTTAACTTATCGAGAAAGAAGCTAAATGTT  50
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCCCCTACCCCTACCTCCTGTTAACTTATCGAGAAAGAAGCTAAATG-T  49

seq1  TGAATGGCTTATGTATGCAAGTATGTATGTAGTAAAAGTCCAGGATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCTTATGTATGCAAGTATGTATGTAGTAAAAGTCCAGGATTTTC  99

seq1  ATATTTATATACAACTCGCATTTCTGCTTCTATTGGTCTCACTTTTGACT  150
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  ATATTTATATACAACTCGCATTTCTGCTTCTATGGATCTCACTTTTGACT  149

seq1  CTGATGTTTTTAAATTAATTTTTAAATACTTTGGTGCTGCTGTGATCCAT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATG-TTTTAAATTAATTTTTAAATACTTTGGTGCTGCTGTGATCCAT  198

seq1  CTCTCCTTCCCAAGTGCTAGGGTTGTAGACCTGTGCCACTGGGTTTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTCCCAAGTGCTAGGGTTGTAGACCTGTGCCACTGGGTTTGGCT  248

seq1  TTTAGGTGATGTTTTTGGTGATGAAAAGTGGTAGGATCACCTTTGTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTGATGTTTTTGGTGATGAAAAGTGGTAGGATCACCTTTGTTACT  298

seq1  TACTGTCCATGTGACTTTAGAGAAATTATGAAATGTTCCTGGGGTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCCATGTGACTTTAGAGAAATTATGAAATGTTCCTGGGGTTCAAT  348

seq1  TTTCTCATCTAACAAATAGTGAGTGTGTTTGGTGATTACTGTATTATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCTAACAAATAGTGAGTGTGTTTGGTGATTACTGTATTATGAA  398

seq1  CTTATTGCCAATGTAAGTGAGTTTATGGGTTGTAAGATACTGTGTCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGCCAATGTAAGTGAGTTTATGGGTTGTAAGATACTGTGTCTGGT  448

seq1  GAGCCAAATAGTTCAGTGGGGAGAGCATTAGCCTGAAGATGCTTTGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAATAGTTCAGTGGGGAGAGCATTAGCCTGAAGATGCTTTGTTGA  498

seq1  CTTTAACATTCTCTGTAAGAGTTGTTTCAGAAGAACAAATTAGAAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACATTCTCTGTAAGAGTTGTTTCAGAAGAACAAATTAGAAAGGAA  548

seq1  TATGTAGAACTTATCAAAAGCAATGTAGAGGTAGCAAGGTAAAATGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGAACTTATCAAAAGCAATGTAGAGGTAGCAAGGTAAAATGAATA  598

seq1  ATGACTGACAGCTCTTAGGGAGAAAAAAAACACTAATTGTCTCTGTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGACAGCTCTTAGGGAGAAAAAAAACACTAATTGTCTCTGTCCCT  648

seq1  GCCGTCTTTCTCCCTCCCTCAAAAGAACCACTTAATACATCAATAATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCTTTCTCCCTCCCTCAAAAGAACCACTTAATACATCAATAATTGA  698

seq1  AGTTCCTTGCTCCAGAGACCGACTTCAGTAGCACCTGAGGTTGGCTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTGCTCCAGAGACCGACTTCAGTAGCACCTGAGGTTGGCTTATT  748

seq1  GTAAGATTTCTATCAGGCTTTTTTTCCTGGTCTTTTTTCCCCTGTATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTTCTATCAGGCTTTTTTTCCTGGTCTTTTTTCCCCTGTATTGT  798

seq1  AGTCATTGATTTTTCAAAAGGGTAAATCTGATCATTTAATTTGTGTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTGATTTTTCAAAAGGGTAAATCTGATCATTTAATTTGTGTGCTT  848

seq1  AAATTATTTCTAGCTTTATAATTAAGATGAAATATTATTTCTCATTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTCTAGCTTTATAATTAAGATGAAATATTATTTCTCATTTCTT  898

seq1  TAAGATAAGTGAGTTCCTTTCCTAACATCTTTTTAGCCTTAGAGACTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAAGTGAGTTCCTTTCCTAACATCTTTTTAGCCTTAGAGACTCCA  948

seq1  CAATTCTCCCCCATTCCTAAATATGTAATTGTCTAAGGCATGTTGAATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCCCCCATTCCTAAATATGTAATTGTCTAAGGCATGTTGAATTC  998