BAC Information

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BAC

Clone NameB6Ng01-056O24
Chromosome11 (Build37)
Map Location 50,273,515 - 50,372,287
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056O24.bB6Ng01-056O24.g
ACCDH878950DH878951
length1,0791,043
definitionDH878950|Mus musculus domesticus DNA, BAC clone: B6Ng01-056O24, 5' end.DH878951|Mus musculus domesticus DNA, BAC clone: B6Ng01-056O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,273,515 - 50,274,598)(50,371,245 - 50,372,287)
sequence
gaattcagagagatggcaacaggggaagctggagagagaacaagtaaggg
cttggagggaataagtgttagactatatagattatatatgtatatatata
tttaatgtctctattgggagatatataatacatatatgttacatatatta
tatatatatatacacccatgagtgggcagaggaagagacagagacagaga
gagatggagacagagagacagagagacacaaagagagagacagagaatag
cagagagacagagagagatttatagagaacataaggagtgattgtaaggt
actttatacatggctccttgggcatgtctcagccctcaggcaggccatct
ggtaggggaggctgaattctcaggcaggagccaacaccacaattcacaga
caaaaatctctccttaattaggggacccttagattatctatctatctatc
tatctatctatctatctatctatctatctacctatctatctatctatcta
tgagacagggtctcactgtctcactaacagggtctagccttggctgggct
agaacttgctatatagaccaggctgacttggaactgcctctgccctcgaa
gcactgggactgaaggtgtgcaccaccaccacgctctgtgccacgaagct
gattatatctgtagctatgcaaattagttattttttctctatggaaggga
ttctaggtgccctgttggaggcagaccctggatttttcaaagatgtctac
atcctagtccctgtaaccttccgccctgcaggccaaagaggcttctgtgt
gatgcgctgatgctaatgatctggacaggggaagttttcctagatcatca
gaggaaaggccccgtgacgtcacaaaaggtcttaccagggggagacatgg
gcaacggaagcagacggtggaatgatgcagggtcagggtccagaataaag
cagctgctaggtataagaaaacaagacccctaccatcacccttgactcag
gatgcgctccaggataggtgggcaccactacataagcaattttgtgatgg
ctaggtgataagataaagagtagaaaaac
gaattcttgttattgttttaaggtgttggtttggggagggtgatttgtta
cacagcaatggatagctgatacaaacctgctctggaaaagcctaaatcta
agccttgatagggtgaagaagatacaacagcaaatttactgcgtgctaga
attaaattctttaaaggaagaaaacatgattcagtgttttaaaatgtata
atctacaatggctagcacacagtaaaagaaaaaaaagttacagacatgaa
cccaggtgtggtggtgtgtttctttaatcctagcactggggaggcaaagg
taggtgggtctcccagttgaaggtcaacctggtctacatacagagttcta
ggacagccagggataaatagagagatcctatctcaaaaaattaataaata
aataaaatatataaaattactagacagtcaaacaaaattttaaaaaaaca
gtgtatactcattttaaaaaatgcagtcgatagggactctgagctgatcc
agatgttagaaacaacagacaagaacttttaaagcatgttagaaatgtgt
tgaaggacgtaaagaaaaatattatcttaataagtgaacagatgggaaat
tccaggagagaaacaggaataaagggaaaacaataaacagaagcactgta
aatgaaaaggaaagcttaccaggttggcttcaaaacacatctgagatgtc
agaagaaaggaacaatgaagtggagaagatttctactctaaagaacagat
gtaaaatatcagccctaaaacatgaaaagaacccattggcctgcaagaac
cccacgagaccgtccaagtgtcccttccagtgtccaaccaggtggatggg
gaagaaaaaaaaaaatcccccatgaatgactgttctggaaaagggctgat
gagaggctccgtgaactatgggcttgctgccacctgggtaacctgattct
gattctgaaccccacatgctaaaggatagaacagacttttgtgagttacc
tgaccctctacatggcacattgtgggtaggggaaggtgattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50273515_50274598
seq2: B6Ng01-056O24.b_48_1126

seq1  GAATTCAGAGAGATGGCAACAGGGGAAGCTGGAGAGAGAACAAGTAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGATGGCAACAGGGGAAGCTGGAGAGAGAACAAGTAAGGG  50

seq1  CTTGGAGGGAATAAGTGTTAGACTATATAGATTATATATGTATATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGGAATAAGTGTTAGACTATATAGATTATATATGTATATATATA  100

seq1  TTTAATGTCTCTATTGGGAGATATATAATACATATATGTTACATATATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTCTCTATTGGGAGATATATAATACATATATGTTACATATATTA  150

seq1  TATATATATATACACCCATGAGTGGGCAGAGGAAGAGACAGAGACAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATACACCCATGAGTGGGCAGAGGAAGAGACAGAGACAGAGA  200

seq1  GAGATGGAGACAGAGAGACAGAGAGACACAAAGAGAGAGACAGAGAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGAGACAGAGAGACAGAGAGACACAAAGAGAGAGACAGAGAATAG  250

seq1  CAGAGAGACAGAGAGAGATTTATAGAGAACATAAGGAGTGATTGTAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACAGAGAGAGATTTATAGAGAACATAAGGAGTGATTGTAAGGT  300

seq1  ACTTTATACATGGCTCCTTGGGCATGTCTCAGCCCTCAGGCAGGCCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATACATGGCTCCTTGGGCATGTCTCAGCCCTCAGGCAGGCCATCT  350

seq1  GGTAGGGGAGGCTGAATTCTCAGGCAGGAGCCAACACCACAATTCACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGAGGCTGAATTCTCAGGCAGGAGCCAACACCACAATTCACAGA  400

seq1  CAAAAATCTCTCCTTAATTAGGGGACCCTTAGATTATCTATCTATCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCTCTCCTTAATTAGGGGACCCTTAGATTATCTATCTATCTATC  450

seq1  TATCTATCTATCTATCTATCTATCTATCTACCTATCTATCTATCTATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTACCTATCTATCTATCTATCTA  500

seq1  TGAGACAGGGTCTCACTGTCTCACTAACAGGGTCTAGCCTTGGCTGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTCTCACTGTCTCACTAACAGGGTCTAGCCTTGGCTGGGCT  550

seq1  AGAACTTGCTATATAGACCAGGCTGACTTGGAACTGCCTCTGCCCTCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGCTATATAGACCAGGCTGACTTGGAACTGCCTCTGCCCTCGAA  600

seq1  GCACTGGGACTGAAGGTGTGCACCACCACCACGCTCTGTGCCACGAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGACTGAAGGTGTGCACCACCACCACGCTCTGTGCCACGAAGCT  650

seq1  GATTATATCTGTAGCTATGCAAATTAGTTATTTTTTCTCTATGGAAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATCTGTAGCTATGCAAATTAGTTATTTTTTCTCTATGGAAGGGA  700

seq1  TTCTAGGTGCCCTGTTGGAGGCAGACCCTGGATTTTTCAAAGATGTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTGCCCTGTTGGAGGCAGACCCTGGATTTTTCAAAGATGTCTAC  750

seq1  ATCCTAGTCCCTGTAACCTTCCGCCCTGCAGGCCAAAGAGGCTTCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGTCCCTGTAACCTTCCGCCCTGCAGGCCAAAGAGGCTTCTGTGT  800

seq1  GATGCGCTGATGCTAATGATCTGGACAGGGGAAGTTTTCCTAGATCATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGCTGATGCTAATGATCTGGACAGGGGAAGTTTTCCTAGATCATCA  850

seq1  GAGG-AAGGCCCCGTGACGTCACAAAAGGTCTTACCAGGGGGAGACAT-G  898
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGGAAAGGCCCCGTGACGTCACAAAAGGTCTTACCAGGGGGAGACATGG  900

seq1  GCAACGGAAGCAGACGGTGGAATGATGCAGGGTCAGGGGTCCAGAAATAA  948
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  GCAACGGAAGCAGACGGTGGAATGATGCAGGGTCA-GGGTCCAG-AATAA  948

seq1  AGGCAGCTGCTAGGTATAAAGAAAACAAGACCCCCACCATCACCC-TGAC  997
      | ||||||||||||||| |||||||||||||||| |||||||||| ||||
seq2  A-GCAGCTGCTAGGTAT-AAGAAAACAAGACCCCTACCATCACCCTTGAC  996

seq1  CCAGGAATGCGCTCCAGGACAGGTGGGCACCACTACAATAAGCAAATATG  1047
       |||| ||||||||||||| |||||||||||||||| |||||||| | ||
seq2  TCAGG-ATGCGCTCCAGGATAGGTGGGCACCACTAC-ATAAGCAATTTTG  1044

seq1  TGATGGCGAGGTGAGAAAGATAAAGAGATAGAAAAAC  1084
      ||||||| ||||||  ||||||||||| |||||||||
seq2  TGATGGCTAGGTGA-TAAGATAAAGAG-TAGAAAAAC  1079

seq1: chr11_50371245_50372287
seq2: B6Ng01-056O24.g_69_1111 (reverse)

seq1  GCAATCACCTGCCCATA-CCACAATGTG-CATGTGGA-GGTCAGGTTAAC  47
      |||||||||| ||| || |||||||||| ||||| || ||||||| ||||
seq2  GCAATCACCTTCCCCTACCCACAATGTGCCATGTAGAGGGTCAGG-TAAC  49

seq1  TCACAGAAGTCTGTTCTCTTCTTTTAGCATGTGGGTTTCAGGGATCAGAC  97
      ||||| |||||||||||  || ||||||||||||| |||| | |||||| 
seq2  TCACAAAAGTCTGTTCT-ATCCTTTAGCATGTGGGGTTCA-GAATCAGAA  97

seq1  TCAGGTTACCCAGGTTGGCAGCAAGCCCCTTAGTTCACTGAGCCATCTCA  147
      |||||||||||||| |||||||||| ||| |||||||| ||||| |||||
seq2  TCAGGTTACCCAGG-TGGCAGCAAG-CCCATAGTTCACGGAGCC-TCTCA  144

seq1  TCAGCCCCTCTCCAGTAACAGTCATTCCTTGGGGGATTTTTTTTTTTCTT  197
      ||||||| | ||||| |||||||||| | |||||||||||||||||||||
seq2  TCAGCCCTTTTCCAG-AACAGTCATT-CATGGGGGATTTTTTTTTTTCTT  192

seq1  -CCCAT-CACCTGGTTGGACACTTGGATGGACACTTGGACGGTCTCGT-G  244
       ||||| |||||||||||||||| | | |||||||||||||||||||| |
seq2  CCCCATCCACCTGGTTGGACACTGGAAGGGACACTTGGACGGTCTCGTGG  242

seq1  GGTTCTTGCAGGCC-ATGGGTTCTTTTCATGTTTTAGGGCTGAT-TTTTA  292
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  GGTTCTTGCAGGCCAATGGGTTCTTTTCATGTTTTAGGGCTGATATTTTA  292

seq1  CCTCTGTTCTTTAGAGTAGAAATTCTTCTCCACTTCATTGTTCCTTTCTT  342
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATCTGTTCTTTAGAGTAGAAA-TCTTCTCCACTTCATTGTTCCTTTCTT  341

seq1  CTGACATCTCAGATGTGTTTTGAAGCCAACCTGGTAAGCTTTCC-TTTCA  391
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGACATCTCAGATGTGTTTTGAAGCCAACCTGGTAAGCTTTCCTTTTCA  391

seq1  TTTACAGTGCTTCTGTTTATTGTTTTCCCTTTATTCCTGTTTCTCTCCTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTGCTTCTGTTTATTGTTTTCCCTTTATTCCTGTTTCTCTCCTG  441

seq1  GAATTTCCCATCTGTTCACTTATTAAGATAATATTTTTCTTTACGTCCTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCCATCTGTTCACTTATTAAGATAATATTTTTCTTTACGTCCTT  491

seq1  CAACACATTTCTAACATGCTTTAAAAGTTCTTGTCTGTTGTTTCTAACAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATTTCTAACATGCTTTAAAAGTTCTTGTCTGTTGTTTCTAACAT  541

seq1  CTGGATCAGCTCAGAGTCCCTATCGACTGCATTTTTTAAAATGAGTATAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCAGCTCAGAGTCCCTATCGACTGCATTTTTTAAAATGAGTATAC  591

seq1  ACTGTTTTTTTAAAATTTTGTTTGACTGTCTAGTAATTTTATATATTTTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTTTTAAAATTTTGTTTGACTGTCTAGTAATTTTATATATTTTA  641

seq1  TTTATTTATTAATTTTTTGAGATAGGATCTCTCTATTTATCCCTGGCTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTAATTTTTTGAGATAGGATCTCTCTATTTATCCCTGGCTGT  691

seq1  CCTAGAACTCTGTATGTAGACCAGGTTGACCTTCAACTGGGAGACCCACC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACTCTGTATGTAGACCAGGTTGACCTTCAACTGGGAGACCCACC  741

seq1  TACCTTTGCCTCCCCAGTGCTAGGATTAAAGAAACACACCACCACACCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGCCTCCCCAGTGCTAGGATTAAAGAAACACACCACCACACCTG  791

seq1  GGTTCATGTCTGTAACTTTTTTTTCTTTTACTGTGTGCTAGCCATTGTAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGTCTGTAACTTTTTTTTCTTTTACTGTGTGCTAGCCATTGTAG  841

seq1  ATTATACATTTTAAAACACTGAATCATGTTTTCTTCCTTTAAAGAATTTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACATTTTAAAACACTGAATCATGTTTTCTTCCTTTAAAGAATTTA  891

seq1  ATTCTAGCACGCAGTAAATTTGCTGTTGTATCTTCTTCACCCTATCAAGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGCACGCAGTAAATTTGCTGTTGTATCTTCTTCACCCTATCAAGG  941

seq1  CTTAGATTTAGGCTTTTCCAGAGCAGGTTTGTATCAGCTATCCATTGCTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTTAGGCTTTTCCAGAGCAGGTTTGTATCAGCTATCCATTGCTG  991

seq1  TGTAACAAATCACCCTCCCCAAACCAACACCTTAAAACAATAACAAGAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAATCACCCTCCCCAAACCAACACCTTAAAACAATAACAAGAAT  1041

seq1  TC  1043
      ||
seq2  TC  1043