BAC Information

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BAC

Clone NameB6Ng01-058B08
Chromosome11 (Build37)
Map Location 48,543,877 - 48,721,909
singlet/doubletdoublet
Overlap geneLOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523
Upstream geneLOC100039647, LOC192895, Hn1l-ps2
Downstream genePsme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058B08.bB6Ng01-058B08.g
ACCDH879759DH879760
length1,095951
definitionDH879759|Mus musculus domesticus DNA, BAC clone: B6Ng01-058B08, 5' end.DH879760|Mus musculus domesticus DNA, BAC clone: B6Ng01-058B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,720,792 - 48,721,909)(48,543,877 - 48,544,832)
sequence
gaattcaactttaaaaatttttttaaaaatttcaagaaggaaagcaaaat
cctctctgaagaaaccatcactttgattgaatcccatctggagaataaga
acctcaaagaggcactgactgtgattagtcatgctctgcgaaatattgac
aaagccccactgaacattgctgtgactggagaaacaggaacagggaaatc
cagctttatcaatgccttgagaggaataagtagtgaagaaaaagatgcag
cccccactggggtaatagagacaaccatgaagagaactccatacccacac
ccaaagcttcccaatgtgacaatatgggacctgcctggcattgggtcaac
caacttcccaccacaaaactatctgacagaaatgaagtttggtgagtatg
acttcttcattatcatctcagctacacgcttcaaagaaattgatgcacat
ctggccaaagccattgcaaagatgaacataaagttctactttgtccgaac
caagatagatcaagatatcagtaatgaacagaggagtaaacctaagtctt
tcaatagagacagtgtcttaaagaaaataaaagatgaatgcttgggtctt
ctccagaaggttctctccagtcagcctccaatcttcctagtctctaactt
tgatgtgtctgactttgacttcccaaagctggagaccaccctactgaagg
aactcccagcccacaagcgccacctcttcatgatgtccttgcacagtgtt
actgagactaccattgcccggaagagggatttcctcagacagaagatctg
gctggaggccctgaaggctggactatgggccaccattccacttgggggct
tagtcagagataaaatgcagaagttggaagagaccttgactctctacagg
tcttactttgggctggatgaagcctcactagaaaatattgccaggattca
atgtgtctgtgaatgaaattaagcacacctagtctctcagtgttaacaag
aacaatgacatgtctcaagaaaactgtgaaatatatgaatatattcctgt
gtactggggaccactgcctcaggcttacttagtagactactactg
gaattcaccagagagccaagcttggaatggagctaacaatgcaggaggca
caaaagagagacagaggaaataagagcattgtggagctgttcaagtgctg
catcaagcattacctgatagcctagcatctatgctcctgaagtttttcat
tccgtaaatcaactacatagcaatgggacagagactggagcaatggctta
gcaataagtctattacacaatcatgggggagggctggagagatggctcag
cagttaagcatctactgcttttgtggaggacacaagctctgttactaccg
tgtaaattgggcagctcacactgccaatagctctgattccagggcactcc
aacacttctggccttcacaggcacctacattcccatgctcatacacatta
aaacataaatctaaaacaatgattagatttcactgcttaacctacttttt
tttgaagcttttttaaaaagatttatttatttattatatgtaaatacact
gtggctgtcttcagacacaccagaagagggcgtcagatcttgttacgggt
ggttgtgagccaccatatggttgctgggatttgaactcatgacctttgga
agagcagtcggtgcttttaccctttgagccatctcaccagccctgcttaa
cctactttttaggacagtgtattgtaacttaaaactagaagacacttcag
tgacagcatgtttatattgatatgttctctcagaagtcattgtttctaga
agatttacaaaaggatatgtaatctgctccccatccccccccaaaaatat
ttaagatccctgcaccattaacactctgcagcctcatgaatctacgaaat
tcaaacatggtttaaactggtgcataatgagtaactcttaccattgtaaa
tggttttgcttgtttgtttagtttagtttggttttggtgaagtggggttt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_48720792_48721909
seq2: B6Ng01-058B08.b_45_1139 (reverse)

seq1  CAGTAGTAAGTCTTACTAAAGTAAAGGCCTGAGGCAAGTGGTCCCCCAGT  50
      ||||||| |||| |||| ||||||  ||||||||| |||||| |||||||
seq2  CAGTAGT-AGTC-TACT-AAGTAA--GCCTGAGGC-AGTGGT-CCCCAGT  43

seq1  AACACAGGAAATATATTCAATATATTTCAACAGTTTTTCTTTGAAGGACA  100
       ||||||| ||||||||| ||||||||| ||||||||   ||||  ||||
seq2  -ACACAGG-AATATATTC-ATATATTTC-ACAGTTTT--CTTGA--GACA  85

seq1  TGTCATTGTTCTTTGTTAACAACTGGAGAGACCTAAGGTGTGCCTTAATT  150
      ||||||||||| |||||||| ||| |||||||   ||||||| |||||||
seq2  TGTCATTGTTC-TTGTTAAC-ACT-GAGAGAC--TAGGTGTG-CTTAATT  129

seq1  TCATTCACAGACACATTGAAATCCTTGGCAATATTTTCTAGTGAGGCTTC  200
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  TCATTCACAGACACATTG-AATCC-TGGCAATATTTTCTAGTGAGGCTTC  177

seq1  ATCCAGCCCAAAGTAAGACCTGTAGAGAGTCAAGGTCTCTTCCAACTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCCCAAAGTAAGACCTGTAGAGAGTCAAGGTCTCTTCCAACTTCT  227

seq1  GCATTTTATCTCTGACTAAGCCCCCAAGTGGAATGGTGGCCCATAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTATCTCTGACTAAGCCCCCAAGTGGAATGGTGGCCCATAGTCCA  277

seq1  GCCTTCAGGGCCTCCAGCCAGATCTTCTGTCTGAGGAAATCCCTCTTCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGGGCCTCCAGCCAGATCTTCTGTCTGAGGAAATCCCTCTTCCG  327

seq1  GGCAATGGTAGTCTCAGTAACACTGTGCAAGGACATCATGAAGAGGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGGTAGTCTCAGTAACACTGTGCAAGGACATCATGAAGAGGTGGC  377

seq1  GCTTGTGGGCTGGGAGTTCCTTCAGTAGGGTGGTCTCCAGCTTTGGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGGGCTGGGAGTTCCTTCAGTAGGGTGGTCTCCAGCTTTGGGAAG  427

seq1  TCAAAGTCAGACACATCAAAGTTAGAGACTAGGAAGATTGGAGGCTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCAGACACATCAAAGTTAGAGACTAGGAAGATTGGAGGCTGACT  477

seq1  GGAGAGAACCTTCTGGAGAAGACCCAAGCATTCATCTTTTATTTTCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAACCTTCTGGAGAAGACCCAAGCATTCATCTTTTATTTTCTTTA  527

seq1  AGACACTGTCTCTATTGAAAGACTTAGGTTTACTCCTCTGTTCATTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGTCTCTATTGAAAGACTTAGGTTTACTCCTCTGTTCATTACTG  577

seq1  ATATCTTGATCTATCTTGGTTCGGACAAAGTAGAACTTTATGTTCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGATCTATCTTGGTTCGGACAAAGTAGAACTTTATGTTCATCTT  627

seq1  TGCAATGGCTTTGGCCAGATGTGCATCAATTTCTTTGAAGCGTGTAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGGCTTTGGCCAGATGTGCATCAATTTCTTTGAAGCGTGTAGCTG  677

seq1  AGATGATAATGAAGAAGTCATACTCACCAAACTTCATTTCTGTCAGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATAATGAAGAAGTCATACTCACCAAACTTCATTTCTGTCAGATAG  727

seq1  TTTTGTGGTGGGAAGTTGGTTGACCCAATGCCAGGCAGGTCCCATATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTGGGAAGTTGGTTGACCCAATGCCAGGCAGGTCCCATATTGT  777

seq1  CACATTGGGAAGCTTTGGGTGTGGGTATGGAGTTCTCTTCATGGTTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGGAAGCTTTGGGTGTGGGTATGGAGTTCTCTTCATGGTTGTCT  827

seq1  CTATTACCCCAGTGGGGGCTGCATCTTTTTCTTCACTACTTATTCCTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACCCCAGTGGGGGCTGCATCTTTTTCTTCACTACTTATTCCTCTC  877

seq1  AAGGCATTGATAAAGCTGGATTTCCCTGTTCCTGTTTCTCCAGTCACAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTGATAAAGCTGGATTTCCCTGTTCCTGTTTCTCCAGTCACAGC  927

seq1  AATGTTCAGTGGGGCTTTGTCAATATTTCGCAGAGCATGACTAATCACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCAGTGGGGCTTTGTCAATATTTCGCAGAGCATGACTAATCACAG  977

seq1  TCAGTGCCTCTTTGAGGTTCTTATTCTCCAGATGGGATTCAATCAAAGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCTCTTTGAGGTTCTTATTCTCCAGATGGGATTCAATCAAAGTG  1027

seq1  ATGGTTTCTTCAGAGAGGATTTTGCTTTCCTTCTTGAAATTTTTAAAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTTCAGAGAGGATTTTGCTTTCCTTCTTGAAATTTTTAAAAAA  1077

seq1  ATTTTTAAAGTTGAATTC  1118
      ||||||||||||||||||
seq2  ATTTTTAAAGTTGAATTC  1095

seq1: chr11_48543877_48544832
seq2: B6Ng01-058B08.g_69_1018

seq1  GAATTCACCAGAGAGCCAAGCTTGGAATGGAGCTAACAATGCAGGAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGAGAGCCAAGCTTGGAATGGAGCTAACAATGCAGGAGGCA  50

seq1  CAAAAGAGAGACAGAGGAAATAAGAGCATTGTGGAGCTGTTCAAGTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGAGACAGAGGAAATAAGAGCATTGTGGAGCTGTTCAAGTGCTG  100

seq1  CATCAAGCATTACCTGATAGCCTAGCATCTATGCTCCTGAAGTTTTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGCATTACCTGATAGCCTAGCATCTATGCTCCTGAAGTTTTTCAT  150

seq1  TCCGTAAATCAACTACATAGCAATGGGACAGAGACTGGAGCAATGGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTAAATCAACTACATAGCAATGGGACAGAGACTGGAGCAATGGCTTA  200

seq1  GCAATAAGTCTATTACACAATCATGGGGGAGGGCTGGAGAGATGGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAGTCTATTACACAATCATGGGGGAGGGCTGGAGAGATGGCTCAG  250

seq1  CAGTTAAGCATCTACTGCTTTTGTGGAGGACACAAGCTCTGTTACTACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGCATCTACTGCTTTTGTGGAGGACACAAGCTCTGTTACTACCG  300

seq1  TGTAAATTGGGCAGCTCACACTGCCAATAGCTCTGATTCCAGGGCACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTGGGCAGCTCACACTGCCAATAGCTCTGATTCCAGGGCACTCC  350

seq1  AACACTTCTGGCCTTCACAGGCACCTACATTCCCATGCTCATACACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTCTGGCCTTCACAGGCACCTACATTCCCATGCTCATACACATTA  400

seq1  AAACATAAATCTAAAACAATGATTAGATTTCACTGCTTAACCTACTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAATCTAAAACAATGATTAGATTTCACTGCTTAACCTACTTTTT  450

seq1  TTTGAAGCTTTTTTAAAAAGATTTATTTATTTATTATATGTAAATACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCTTTTTTAAAAAGATTTATTTATTTATTATATGTAAATACACT  500

seq1  GTGGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATCTTGTTACGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATCTTGTTACGGGT  550

seq1  GGTTGTGAGCCACCATATGGTTGCTGGGATTTGAACTCATGACCTTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGCCACCATATGGTTGCTGGGATTTGAACTCATGACCTTTGGA  600

seq1  AGAGCAGTCGGTGCTTTTACCCTTTGAGCCATCTCACCAGCCCTGCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTCGGTGCTTTTACCCTTTGAGCCATCTCACCAGCCCTGCTTAA  650

seq1  CCTACTTTTTAGGACAGTGTATTGTAACTTAAAACTAGAAGACACTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTTTAGGACAGTGTATTGTAACTTAAAACTAGAAGACACTTCAG  700

seq1  TGACAGCATGTTTATATTGATATGTTCTCTCAGAAGTCATTGTTTCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCATGTTTATATTGATATGTTCTCTCAGAAGTCATTGTTTCTAGA  750

seq1  AGATTTACAAAAGGATATGTAATCTGCTCCCCATCCCCCCCCAAAAAATA  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGATTTACAAAAGGATATGTAATCTGCTCCCCATCCCCCCCC-AAAAATA  799

seq1  TTTAAGATCCCTGCACCATTAACACTCTGCAGCCTCATGAATCTACGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATCCCTGCACCATTAACACTCTGCAGCCTCATGAATCTACGAAA  849

seq1  TTCAAACATGGTTTAAACTGGTGCATAATGAGTAACTCTTACCATTGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACATGGTTTAAACTGGTGCATAATGAGTAACTCTTACCATTGTAA  899

seq1  ATGGTTTTTGCTTGTTTGTTTTAGTTTTAGTTTTGGTTTTGGTGTAGTTG  950
      |||| ||||||||||||| ||||| ||||| ||||||||||||| || ||
seq2  ATGG-TTTTGCTTGTTTG-TTTAG-TTTAG-TTTGGTTTTGGTGAAG-TG  944

seq1  GGGTTT  956
      ||||||
seq2  GGGTTT  950