BAC Information

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BAC

Clone NameB6Ng01-058E14
Chromosome11 (Build37)
Map Location 84,293,938 - 84,436,988
singlet/doubletdoublet
Overlap geneAatf, Lhx1
Upstream geneTaf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671
Downstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058E14.bB6Ng01-058E14.g
ACCDH879905DH879906
length1,105834
definitionDH879905|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E14, 5' end.DH879906|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,293,938 - 84,295,045)(84,436,158 - 84,436,988)
sequence
gaattcttcaaattcttcccaggcaaaacaaataaatatctcctctatta
ttcatacagaactttattctatttgtctaacactatgaataatagataaa
ctgaaatcaacagtttctaattcacctctaatttttctgctaacgattac
agagttaaaaagttaagagatgcagaagactcagtgctcgagccctcttg
gcatatcgccacaaaacaaatggaggctgtcaaggatatttgtgtttagt
ttgccctacatggtccatttccaaaagcctttttcttaagagattaagaa
agacatatgctttcccacactagcaagtctcaatataagcaactaccagt
gttaggaataattctgagtgcagaacaagggaaagagcactttattgaga
gtccagagtcagaggggaccgatttaatctctgaggctcaattttctcac
ctatataacataggcaattctttccctgttgatcttataaaaatgaggta
aaaaatgatagctgtattattgtttattgacatattttggatattttcct
aaaagctttagaaagagaaggtctgttactgtgaaaccattgtctcctac
atggtcaaaatcttttaagagttgcatctgctaagctatagcactaagac
tggatggagtggcatgcactgatcccagtattcacttacatactactcat
ttgcaagtgtttctataaatgtcatcagtctaaaaataatcttcatctag
caagttaatgtttcctgatccacctagattgcccaatactagtaaaattg
tagacatagaatcagtctggatgtttgctaattagattataaactagcaa
gtaaaattttggcagcggaaggagaggaaatgacaagtgtatgaatgtat
aaagtaaatgaagctagcctttccattttttaaatgtctacatggttatt
gtaaataagtatgcaaacacaaaaatatttacatccaagtacacacagct
cctcctcatcatcccagatggacgcttctggagctggaatgtgcagattg
taagagtgtctctttttttcttctcaaagtaactccaaactagaactaaa
gtaca
gaattccatgggttgtggaggtaggttgcctctggtatgagtctggaagg
ctaagcaagggagactctcttggagggacactgagcaattagtgaaggac
accccaggcagtgtgaacagcacaggcagacactcagaggaaccaaatct
agggtgacaaatgcatacaggcacaggataccccaagcctgtgagcaccc
atctctttctctgtgtatgtcatgctctgactattgtgtagctttcacta
ggggtgccatgtccccatttgctggagggggaggcccatctgaagtaatg
ggaagaaagcaaggaagacggccaaaggcccctgagtcaggagaactgaa
cagtggttgacagccccaggttttcccatcagcaacctctctgacgaaga
cacctataggactgaacagatactgaggccatttattacccaaagccaaa
gaaacttagtgtcccaaagtccccatccaaagatgtgtccaaggccttcc
ctcacagccctctgccgctggtgaggaagaaggtgtctcctctgtgttca
cattaagcatttaggaactaggaagccagaagatacaaacagctgcagat
taatatcttgaagaaaaaaatttgggggtgctagcaagatggttttagaa
aggcacttgtcgctaagcctaacaatggaacttaaaaaaaagttgtcctc
tgacctccatgtgtgtccttggcatgtgcacacccacacacatatactgt
aataataaatgcaataacagttttttttaagtgagcagtagtggttgcac
acctttaatcccagcactttgtgagacagaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_84293938_84295045
seq2: B6Ng01-058E14.b_41_1145

seq1  GAATTCTTCAAATTCTTCCCAGGCAAAACAAATAAATATCTCCTCTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAATTCTTCCCAGGCAAAACAAATAAATATCTCCTCTATTA  50

seq1  TTCATACAGAACTTTATTCTATTTGTCTAACACTATGAATAATAGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGAACTTTATTCTATTTGTCTAACACTATGAATAATAGATAAA  100

seq1  CTGAAATCAACAGTTTCTAATTCACCTCTAATTTTTCTGCTAACGATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCAACAGTTTCTAATTCACCTCTAATTTTTCTGCTAACGATTAC  150

seq1  AGAGTTAAAAAGTTAAGAGATGCAGAAGACTCAGTGCTCGAGCCCTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAAAAAGTTAAGAGATGCAGAAGACTCAGTGCTCGAGCCCTCTTG  200

seq1  GCATATCGCCACAAAACAAATGGAGGCTGTCAAGGATATTTGTGTTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCGCCACAAAACAAATGGAGGCTGTCAAGGATATTTGTGTTTAGT  250

seq1  TTGCCCTACATGGTCCATTTCCAAAAGCCTTTTTCTTAAGAGATTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTACATGGTCCATTTCCAAAAGCCTTTTTCTTAAGAGATTAAGAA  300

seq1  AGACATATGCTTTCCCACACTAGCAAGTCTCAATATAAGCAACTACCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATGCTTTCCCACACTAGCAAGTCTCAATATAAGCAACTACCAGT  350

seq1  GTTAGGAATAATTCTGAGTGCAGAACAAGGGAAAGAGCACTTTATTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAATAATTCTGAGTGCAGAACAAGGGAAAGAGCACTTTATTGAGA  400

seq1  GTCCAGAGTCAGAGGGGACCGATTTAATCTCTGAGGCTCAATTTTCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGTCAGAGGGGACCGATTTAATCTCTGAGGCTCAATTTTCTCAC  450

seq1  CTATATAACATAGGCAATTCTTTCCCTGTTGATCTTATAAAAATGAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAACATAGGCAATTCTTTCCCTGTTGATCTTATAAAAATGAGGTA  500

seq1  AAAAATGATAGCTGTATTATTGTTTATTGACATATTTTGGATATTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATAGCTGTATTATTGTTTATTGACATATTTTGGATATTTTCCT  550

seq1  AAAAGCTTTAGAAAGAGAAGGTCTGTTACTGTGAAACCATTGTCTCCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTTAGAAAGAGAAGGTCTGTTACTGTGAAACCATTGTCTCCTAC  600

seq1  ATGGTCAAAATCTTTTAAGAGTTGCATCTGCTAAGCTATAGCACTAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAAAATCTTTTAAGAGTTGCATCTGCTAAGCTATAGCACTAAGAC  650

seq1  TGGATGGAGTGGCATGCACTGATCCCAGTATTCACTTACATACTACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGTGGCATGCACTGATCCCAGTATTCACTTACATACTACTCAT  700

seq1  TTGCAAGTGTTTCTATAAATGTCATCAGTCTAAAAATAATCTTCATCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTGTTTCTATAAATGTCATCAGTCTAAAAATAATCTTCATCTAG  750

seq1  CAAGTTAATGTTTCCTGATCCACCTAGATTGCCCAATACTAGTAAAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAATGTTTCCTGATCCACCTAGATTGCCCAATACTAGTAAAATTG  800

seq1  TAGACATAGAATCAGTCTGGATGTTTGCTAATTAGATTATAAACTAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATAGAATCAGTCTGGATGTTTGCTAATTAGATTATAAACTAGCAA  850

seq1  GTAAAATTTTGGCAGCGGAAGGAGAGGAAATGACAAGTGTATGAATGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTTGGCAGCGGAAGGAGAGGAAATGACAAGTGTATGAATGTAT  900

seq1  AAAGTAAAATGAAGCTAGCCTTTCCATTTTTTAAATGTCTACATGGTTAT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGT-AAATGAAGCTAGCCTTTCCATTTTTTAAATGTCTACATGGTTAT  949

seq1  TGTAAATAAGTATGCAAACACAAAATTATTTACATCCAAGTACACACAAG  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  TGTAAATAAGTATGCAAACACAAAAATATTTACATCCAAGTACACAC-AG  998

seq1  CTCTCCCTCATCATCCCAGATGGACGC-TCT-GAGCTGGAATGTGCAGAT  1048
      |||  |||||||||||||||||||||| ||| ||||||||||||||||||
seq2  CTCCTCCTCATCATCCCAGATGGACGCTTCTGGAGCTGGAATGTGCAGAT  1048

seq1  TGTAAGAGTGTCTCTTTTTTTCTCCATCAAAAGTAACTCCAAAACTAGAG  1098
      ||||||||||||||||||||||| | || ||||||||||| |||||||| 
seq2  TGTAAGAGTGTCTCTTTTTTTCTTC-TC-AAAGTAACTCC-AAACTAGAA  1095

seq1  CTAAAGTACA  1108
      ||||||||||
seq2  CTAAAGTACA  1105

seq1: chr11_84436158_84436988
seq2: B6Ng01-058E14.g_69_902 (reverse)

seq1  TGCCTCTGTCTCAC-AAGTGCTGGGATTAAAGGTGTGCAACCACTACTGC  49
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGTCTCACAAAGTGCTGGGATTAAAGGTGTGCAACCACTACTGC  50

seq1  TCACTTAAAAAAAACTGTTATTGCATTTATTATTACAGTATATGTGTGTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAAAAAAACTGTTATTGCATTTATTATTACAGTATATGTGTGTG  100

seq1  GGTGTGCACATGCCAAGGACACACATGGAGGTCAGAGGACAAC-TTTTTT  148
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTGTGCACATGCCAAGGACACACATGGAGGTCAGAGGACAACTTTTTTT  150

seq1  TAAGTTCCATTGTTAGGCTTAGCGACAAGTGCCTTTCT-AAACCATCTTG  197
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAAGTTCCATTGTTAGGCTTAGCGACAAGTGCCTTTCTAAAACCATCTTG  200

seq1  CTAGCACCCCCAAATTTTTTTCTTCAAGATATTAATCTGCAGCTGTTTGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCCCCAAATTTTTTTCTTCAAGATATTAATCTGCAGCTGTTTGT  250

seq1  ATCTTCTGGCTTCCTAGTTCCTAAATGCTTAATGTGAACACAGAGGAGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGGCTTCCTAGTTCCTAAATGCTTAATGTGAACACAGAGGAGAC  300

seq1  ACCTTCTTCCTCACCAGCGGCAGAGGGCTGTGAGGGAAGGCCTTGGACAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTCCTCACCAGCGGCAGAGGGCTGTGAGGGAAGGCCTTGGACAC  350

seq1  ATCTTTGGATGGGGACTTTGGGACACTAAGTTTCTTTGGCTTTGGGTAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGATGGGGACTTTGGGACACTAAGTTTCTTTGGCTTTGGGTAAT  400

seq1  AAATGGCCTCAGTATCTGTTCAGTCCTATAGGTGTCTTCGTCAGAGAGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCTCAGTATCTGTTCAGTCCTATAGGTGTCTTCGTCAGAGAGGT  450

seq1  TGCTGATGGGAAAACCTGGGGCTGTCAACCACTGTTCAGTTCTCCTGACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGGGAAAACCTGGGGCTGTCAACCACTGTTCAGTTCTCCTGACT  500

seq1  CAGGGGCCTTTGGCCGTCTTCCTTGCTTTCTTCCCATTACTTCAGATGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCTTTGGCCGTCTTCCTTGCTTTCTTCCCATTACTTCAGATGGG  550

seq1  CCTCCCCCTCCAGCAAATGGGGACATGGCACCCCTAGTGAAAGCTACACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTCCAGCAAATGGGGACATGGCACCCCTAGTGAAAGCTACACA  600

seq1  ATAGTCAGAGCATGACATACACAGAGAAAGAGATGGGTGCTCACAGGCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGAGCATGACATACACAGAGAAAGAGATGGGTGCTCACAGGCTT  650

seq1  GGGGTATCCTGTGCCTGTATGCATTTGTCACCCTAGATTTGGTTCCTCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATCCTGTGCCTGTATGCATTTGTCACCCTAGATTTGGTTCCTCTG  700

seq1  AGTGTCTGCCTGTGCTGTTCACACTGCCTGGGGTGTCCTTCACTAATTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGCCTGTGCTGTTCACACTGCCTGGGGTGTCCTTCACTAATTGC  750

seq1  TCAGTGTCCCTCCAAGAGAGTCTCCCTTGCTTAGCCTTCCAGACTCATAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCCCTCCAAGAGAGTCTCCCTTGCTTAGCCTTCCAGACTCATAC  800

seq1  CAGAGGCAACCTACCTCCACAACCCATGGAATTC  831
      ||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAACCTACCTCCACAACCCATGGAATTC  834