BAC Information

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BAC

Clone NameB6Ng01-058F11
Chromosome11 (Build37)
Map Location 70,313,044 - 70,457,261
singlet/doubletdoublet
Overlap geneTm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba
Upstream geneDnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15
Downstream geneSlc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058F11.bB6Ng01-058F11.g
ACCDH879947DH879948
length1,1311,088
definitionDH879947|Mus musculus domesticus DNA, BAC clone: B6Ng01-058F11, 5' end.DH879948|Mus musculus domesticus DNA, BAC clone: B6Ng01-058F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,313,044 - 70,314,185)(70,456,151 - 70,457,261)
sequence
gaattctagtaccttcaccaaaagtccttcctgaaagtattcccgaatcc
tacagtaatcgttgtttccagcattcactttgggatattgcgatctctcc
tgtgtttggggaaatgttttcaaatctcgacaatgttttgttaatgctgt
attaatgttatgtcatccacagagagttgcttgaaataagacgagcaatg
tgactcagtgcctgggcacttgccaaacacccatgagacctcacacacac
acacacacacacacacacacacacacaggagcaggggcatagaaggaaag
ggatagagaaaagggaaaagagagagatacacacacacagagaaacataa
cataatgaaggggctggagagatggcttagtgcataaagtacttgcctta
caagcattcagacacgcattcagtccccagaacctacattaaaattctgg
tcatgttggcttgtgcttataatcccagcaatgaggaagtagttccctga
gggtcactggccttctggtgtcgcctcgtctattaatggtctccaagcca
gtgagagaccttgtctcaaagtaggtgaacagtgtccctgaagatgacat
gaagattgtcctccgatcttcacacacattcacacacacatgtgggatac
atgtgcgtacagacacatgctcattaaaattaataacatgagctggacct
gacctggtggtgcgtgactttaatctcagcacctgggaaggagccatagg
tagatccctgagtttcaagccagtttggtctaaaaatgcaatgaagacgc
cacctattggctacactgtcttactggacagcacggttgtgtataagcac
caaaataactaatgtttcaaacaagttatgaggtcctaagactgaattcc
accttgttgttctgtatcataatttgaaacgtaagtgaaaagccatgact
actggcagttacgtaagctccagctgtcatatactagacttaattttgtc
aattgaaattatgtatgactcagctatgagttaaaataccttttgaatta
cagtcttctggcaggattcgtagctttgttgacaaaatagactgtaatga
attaaccagctttacagcacatgccttgcta
gaattccaggacagccagggtcacagagagaaaccctgtcttgaaagacc
aaagcaacaacaaaaaccccctggacttctatgggctagagccacagtgg
ttgagtgagaggttcagagctcttgggggatataacggagtcaaacccaa
ggattgaggcaaaaagaatattgatcagaaactgggttggctagagaaag
tgattatttttttcatccattttgtttgttttttgagacagagtttctct
gtgtagccctagctgtcctggaactcactctgtagaccaggctcgcctcg
aactaagaaatccacctgcctttgcttcccaagtgctgggattaaaggcg
tgcaccactgcccggcttttcatccatttttttaagaagtatgattccca
ggctctcaaggatcctacagacttgttggcatataaagggctatggaaag
gtcaaaccaggagacgtgctaggcagcctgagggctgtatgccaggtcag
acaacaggcaggcagcaggtgcgagctgtccctttggcaaagccttaaca
aaaaagatggtagtgcaacatcctggtgcctctgccgctactttccttaa
tccttccatgcgcagcatgccctaggccaccctaggtagccacctggaga
catttggagcctgcacctttacttaaggagtttaaagtccagcaagaaga
tgcaagaacatttggaaatggctatagcagtggactgcatcttgcccaac
ttaggagaaagatttgttcatggtagtagtgaggtagactgagaaggagg
cagaactcttagctaaagtgaggatgggctcagaagaagactactgctgg
cacaggtgacccatgagacatttcagtatgaggtaccatgagagatgaag
gtgaacaccatgagagatgaagctggacactagtgtcacatgccaggtca
ggtcagcacagatgagaccacagaggcaataagagccagagagacaagga
ctagagccaggggaaaaaagcatcgattgagaaaaggactgctttcaaaa
ggtgagtcatgaaaaagttgatgcttacctctaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70313044_70314185
seq2: B6Ng01-058F11.b_45_1175

seq1  GAATTCTAGTACCTTCACCAAAAGTCCTTCCTGAAAGTATTCCCGAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTACCTTCACCAAAAGTCCTTCCTGAAAGTATTCCCGAATCC  50

seq1  TACAGTAATCGTTGTTTCCAGCATTCACTTTGGGATATTGCGATCTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAATCGTTGTTTCCAGCATTCACTTTGGGATATTGCGATCTCTCC  100

seq1  TGTGTTTGGGGAAATGTTTTCAAATCTCGACAATGTTTTGTTAATGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGGGGAAATGTTTTCAAATCTCGACAATGTTTTGTTAATGCTGT  150

seq1  ATTAATGTTATGTCATCCACAGAGAGTTGCTTGAAATAAGACGAGCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTATGTCATCCACAGAGAGTTGCTTGAAATAAGACGAGCAATG  200

seq1  TGACTCAGTGCCTGGGCACTTGCCAAACACCCATGAGACCTCACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGTGCCTGGGCACTTGCCAAACACCCATGAGACCTCACACACAC  250

seq1  ACACACACACACACACACACACACACAGGAGCAGGGGCATAGAAGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACAGGAGCAGGGGCATAGAAGGAAAG  300

seq1  GGATAGAGAAAAGGGAAAAGAGAGAGATACACACACACAGAGAAACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAGAAAAGGGAAAAGAGAGAGATACACACACACAGAGAAACATAA  350

seq1  CATAATGAAGGGGCTGGAGAGATGGCTTAGTGCATAAAGTACTTGCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAAGGGGCTGGAGAGATGGCTTAGTGCATAAAGTACTTGCCTTA  400

seq1  CAAGCATTCAGACACGCATTCAGTCCCCAGAACCTACATTAAAATTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTCAGACACGCATTCAGTCCCCAGAACCTACATTAAAATTCTGG  450

seq1  TCATGTTGGCTTGTGCTTATAATCCCAGCAATGAGGAAGTAGTTCCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTGGCTTGTGCTTATAATCCCAGCAATGAGGAAGTAGTTCCCTGA  500

seq1  GGGTCACTGGCCTTCTGGTGTCGCCTCGTCTATTAATGGTCTCCAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACTGGCCTTCTGGTGTCGCCTCGTCTATTAATGGTCTCCAAGCCA  550

seq1  GTGAGAGACCTTGTCTCAAAGTAGGTGAACAGTGTCCCTGAAGATGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGACCTTGTCTCAAAGTAGGTGAACAGTGTCCCTGAAGATGACAT  600

seq1  GAAGATTGTCCTCCGATCTTCACACACATTCACACACACATGTGGGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTGTCCTCCGATCTTCACACACATTCACACACACATGTGGGATAC  650

seq1  ATGTGCGTACAGACACATGCTCATTAAAATTAATAACATGAGCTGGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGTACAGACACATGCTCATTAAAATTAATAACATGAGCTGGACCT  700

seq1  GACCTGGTGGTGCGTGACTTTAATCTCAGCACCTGGGAAGGAGCCATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTGGTGCGTGACTTTAATCTCAGCACCTGGGAAGGAGCCATAGG  750

seq1  TAGATCCCTGAGTTTCAAGCCAGTTTGGTCTAAAAATGCAATGAAGACGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCCTGAGTTTCAAGCCAGTTTGGTCTAAAAATGCAATGAAGACGC  800

seq1  CACCTATTGGCTACACTGTCTTACTGGACAGCACGGTTGTGTATAAGGCA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACCTATTGGCTACACTGTCTTACTGGACAGCACGGTTGTGTATAA-GCA  849

seq1  CCAAAATAACTAATGTTTCAAACAAGTTATGAGGTCCTAAGACTGAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAACTAATGTTTCAAACAAGTTATGAGGTCCTAAGACTGAATTC  899

seq1  CACCTTGTTGTTCTGTATCATAAATTTGAAACGTAAGTGAAAAGCCATGA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACCTTGTTGTTCTGTATCAT-AATTTGAAACGTAAGTGAAAAGCCATGA  948

seq1  CTACTGGCAGTTACGTAAGCTCCAGCTGTCATATACTAGACTTAATTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGCAGTTACGTAAGCTCCAGCTGTCATATACTAGACTTAATTTTG  998

seq1  TCATTTGATAATATGTAATGACTCAGCTATGAGTAAAATTACCTATTGAA  1050
      ||| |||| | ||||| ||||||||||||||||| ||| ||||| ||| |
seq2  TCAATTGAAATTATGT-ATGACTCAGCTATGAGTTAAAATACCTTTTG-A  1046

seq1  ATTACAGTTCTTCTGGCCAGTATCAGTAGCTTTGTTGACATAATTAGACT  1100
      ||||||| |||||||| ||| ||  ||||||||||||||| || ||||||
seq2  ATTACAG-TCTTCTGG-CAGGATTCGTAGCTTTGTTGACA-AAATAGACT  1093

seq1  TGTTAATGATTAAACCCAGCTTTACAGCAACATGGCTTGCTA  1142
         |||||| | || ||||||||||||| ||||| |||||||
seq2  --GTAATGAATTAA-CCAGCTTTACAGC-ACATGCCTTGCTA  1131

seq1: chr11_70456151_70457261
seq2: B6Ng01-058F11.g_69_1156 (reverse)

seq1  AATCTTAGAGGTTAGCCATCAGACTTTTCTTCATGGACTTCACCTTCTGA  50
      |||||||||||| || ||||| |||||  ||||| ||| ||||||| |||
seq2  AATCTTAGAGGTAAG-CATCA-ACTTT--TTCAT-GAC-TCACCTTTTGA  44

seq1  AAGCAGTCCTTTTCTCAATTCTGACTGCTGTTTTCTCCCCCTGGGCTTCT  100
      |||||||||||||||||||   || |||| ||||   |||||||   |||
seq2  AAGCAGTCCTTTTCTCAAT--CGA-TGCTTTTTT---CCCCTGG--CTCT  86

seq1  ATGTCCTTGGTCTCCTCTGGCTCTTATTTGCCTCTGTGGTCCTCATCTTG  150
      | |||||| |||| |||||||||||| ||||||||||||| |||||||  
seq2  A-GTCCTT-GTCT-CTCTGGCTCTTA-TTGCCTCTGTGGT-CTCATCT--  129

seq1  TTGCTGACCTGGACCTGGCATGTGACACTAGTGTCCAGCTTCATCTCTCA  200
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACCT-GACCTGGCATGTGACACTAGTGTCCAGCTTCATCTCTCA  178

seq1  TGGTGTTCACCTTCATCTCTCATGGTACCTCATACCTGAAATGTCTCATG  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGTGTTCACCTTCATCTCTCATGGTACCTCATA-CTGAAATGTCTCATG  227

seq1  GGTCACCTGTGCCAGCAGTAGTCTTCTTCTGAGCCCATCCTCACTTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCTGTGCCAGCAGTAGTCTTCTTCTGAGCCCATCCTCACTTTAGC  277

seq1  TAAGAGTTCTGCCTCCTTCTCAGTCTACCTCACTACTACCATGAACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTCTGCCTCCTTCTCAGTCTACCTCACTACTACCATGAACAAAT  327

seq1  CTTTCTCCTAAGTTGGGCAAGATGCAGTCCACTGCTATAGCCATTTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTAAGTTGGGCAAGATGCAGTCCACTGCTATAGCCATTTCCAA  377

seq1  ATGTTCTTGCATCTTCTTGCTGGACTTTAAACTCCTTAAGTAAAGGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTGCATCTTCTTGCTGGACTTTAAACTCCTTAAGTAAAGGTGCA  427

seq1  GGCTCCAAATGTCTCCAGGTGGCTACCTAGGGTGGCCTAGGGCATGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAAATGTCTCCAGGTGGCTACCTAGGGTGGCCTAGGGCATGCTGC  477

seq1  GCATGGAAGGATTAAGGAAAGTAGCGGCAGAGGCACCAGGATGTTGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAAGGATTAAGGAAAGTAGCGGCAGAGGCACCAGGATGTTGCACT  527

seq1  ACCATCTTTTTTGTTAAGGCTTTGCCAAAGGGACAGCTCGCACCTGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTTTTGTTAAGGCTTTGCCAAAGGGACAGCTCGCACCTGCTGC  577

seq1  CTGCCTGTTGTCTGACCTGGCATACAGCCCTCAGGCTGCCTAGCACGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTTGTCTGACCTGGCATACAGCCCTCAGGCTGCCTAGCACGTCT  627

seq1  CCTGGTTTGACCTTTCCATAGCCCTTTATATGCCAACAAGTCTGTAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTGACCTTTCCATAGCCCTTTATATGCCAACAAGTCTGTAGGAT  677

seq1  CCTTGAGAGCCTGGGAATCATACTTCTTAAAAAAATGGATGAAAAGCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGAGCCTGGGAATCATACTTCTTAAAAAAATGGATGAAAAGCCGG  727

seq1  GCAGTGGTGCACGCCTTTAATCCCAGCACTTGGGAAGCAAAGGCAGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGCACGCCTTTAATCCCAGCACTTGGGAAGCAAAGGCAGGTGG  777

seq1  ATTTCTTAGTTCGAGGCGAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAGTTCGAGGCGAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  827

seq1  TAGGGCTACACAGAGAAACTCTGTCTCAAAAAACAAACAAAATGGATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTACACAGAGAAACTCTGTCTCAAAAAACAAACAAAATGGATGAA  877

seq1  AAAAATAATCACTTTCTCTAGCCAACCCAGTTTCTGATCAATATTCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATCACTTTCTCTAGCCAACCCAGTTTCTGATCAATATTCTTTT  927

seq1  TGCCTCAATCCTTGGGTTTGACTCCGTTATATCCCCCAAGAGCTCTGAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAATCCTTGGGTTTGACTCCGTTATATCCCCCAAGAGCTCTGAAC  977

seq1  CTCTCACTCAACCACTGTGGCTCTAGCCCATAGAAGTCCAGGGGGTTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTCAACCACTGTGGCTCTAGCCCATAGAAGTCCAGGGGGTTTTT  1027

seq1  GTTGTTGCTTTGGTCTTTCAAGACAGGGTTTCTCTCTGTGACCCTGGCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGCTTTGGTCTTTCAAGACAGGGTTTCTCTCTGTGACCCTGGCTG  1077

seq1  TCCTGGAATTC  1111
      |||||||||||
seq2  TCCTGGAATTC  1088