BAC Information

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BAC

Clone NameB6Ng01-059M08
Chromosome11 (Build37)
Map Location 104,025,344 - 104,196,907
singlet/doubletdoublet
Overlap geneCrhr1, 4933407P14Rik, Mapt, 1700081L11Rik
Upstream geneFmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059M08.bB6Ng01-059M08.g
ACCDH880947DH880948
length1,108788
definitionDH880947|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M08, 5' end.DH880948|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,025,344 - 104,026,473)(104,196,125 - 104,196,907)
sequence
gaattcagtcctggtcctcttccttcctcccttcctctccctcccacctt
ccctctctcccttcctctcacacttgtctttggctgcttgcattgggtgt
gggacagggctggggtacagccgagcccaacagtagctggatccaaagac
acctaagagtgacatcaaagtccggccgtgagggcctgtgtcagaaccaa
ggctggaagtagggcactgatgcagttttaaaaagccccagaggtgcttt
gcaaaacttcagtggttttgagcagctgttgcttatccggaatgcaagat
ttaaaaggtccaaatgggaatacaccgagaagcgccccgcccgttgccat
ccctagccggtagctcacatgttctgtgtgttcaagtcaatgtgcatggt
gttcttggtcttacccagacgtcacctgtcctacaaactactggatgcct
gcttattcatgtggccatcgatcctagagattgttccatgtcagtttaga
gcaagcatcttcactctcgttagatttgcatactaaccacagtccagatg
tgccataacttagcgggccagtcttcattctgtgtttggcttttacagac
agcatcatcacaaggaatcttctataaacgatgctaggcaggtgtgtgaa
tatctgcctccctctatcacctcttctccatgctcagtcccacttacccc
atctgaggagggtgggaacaggggcgtggcagaacaaatgagcaaaaagc
agagggttagaaaccaaaccaccccaggctgccaggtccctgggccttag
gagtgaggatgacagacagacccaggagatcctggaaattccatcctctg
gaaggtctgagttagaaaggaacttgggagaccctccatcccatcctgag
attcccagacctgcttaatctcacccagaacactcgttcacacccagcct
cctgaacagcagggcttgagcgggcagtgtggatggatgctacagtgttg
agatgtccagattctggctccttgctaagataagatggctaatcgatgcg
actggctgggttagactttgtcttcttgaaagtctgcagcctctggatct
gatgctct
gaattctcccatggtcaatctcctaggagtcccattagcccagaactaca
ctcagcccctctcacccctgtggctcgggacagtctgcgacacctggcca
gtgaagacacccgatgttccacaccagagctgggactagatgaacaggtg
aggagagggtatctcctttgagtggagggagggcaagatatgaggtagaa
cagggaggggggcagcatgtgccgaagataaagctcttctctctgttgtt
ttgaaatgaagtgtggttggtcattgttcctagggaagcccaccttggga
gcagtctcgataaacttctccccaagtttgaggtcagggccttggctctg
gaaactggtcatcaccagatcatcttgtctgtccacagtcagtccagcca
tgggaacgacggaccttccctctggcctacagtccccaggcagaatgtga
ggagcagctggatgcacaggacacggcagcccgctgcactcgccgcacct
caggcagcaagactggccgggaggcagaggtggcacccacctcgcctcct
gttgtcccgctcaagagtcggcatctggcagcaacagtcacagctcagcg
cccagctcacagatgagcggaaaatgagactatacagactcactactatt
ggcattaaaagcttcagaaatctctgcgttttgatattcaaacatcatat
gctggaaattttcacagttttttagtgaattttaaggaattttagatcct
cctttggttggtttggtttcgttgtttgttttcttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104025344_104026473
seq2: B6Ng01-059M08.b_44_1151

seq1  GAATTCAGTCCTGGTCCTCTTCCTTCCTCCCTTCCTCTCCCTCCCACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTGGTCCTCTTCCTTCCTCCCTTCCTCTCCCTCCCACCTT  50

seq1  CCCTCTCTCCCTTCCTCTCACACTTGTCTTTGGCTGCTTGCATTGGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTCCCTTCCTCTCACACTTGTCTTTGGCTGCTTGCATTGGGTGT  100

seq1  GGGACAGGGCTGGGGTACAGCCGAGCCCAACAGTAGCTGGATCCAAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGGCTGGGGTACAGCCGAGCCCAACAGTAGCTGGATCCAAAGAC  150

seq1  ACCTAAGAGTGACATCAAAGTCCGGCCGTGAGGGCCTGTGTCAGAACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGAGTGACATCAAAGTCCGGCCGTGAGGGCCTGTGTCAGAACCAA  200

seq1  GGCTGGAAGTAGGGCACTGATGCAGTTTTAAAAAGCCCCAGAGGTGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAGTAGGGCACTGATGCAGTTTTAAAAAGCCCCAGAGGTGCTTT  250

seq1  GCAAAACTTCAGTGGTTTTGAGCAGCTGTTGCTTATCCGGAATGCAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTTCAGTGGTTTTGAGCAGCTGTTGCTTATCCGGAATGCAAGAT  300

seq1  TTAAAAGGTCCAAATGGGAATACACCGAGAAGCGCCCCGCCCGTTGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGTCCAAATGGGAATACACCGAGAAGCGCCCCGCCCGTTGCCAT  350

seq1  CCCTAGCCGGTAGCTCACATGTTCTGTGTGTTCAAGTCAATGTGCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCCGGTAGCTCACATGTTCTGTGTGTTCAAGTCAATGTGCATGGT  400

seq1  GTTCTTGGTCTTACCCAGACGTCACCTGTCCTACAAACTACTGGATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGTCTTACCCAGACGTCACCTGTCCTACAAACTACTGGATGCCT  450

seq1  GCTTATTCATGTGGCCATCGATCCTAGAGATTGTTCCATGTCAGTTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTCATGTGGCCATCGATCCTAGAGATTGTTCCATGTCAGTTTAGA  500

seq1  GCAAGCATCTTCACTCTCGTTAGATTTGCATACTAACCACAGTCCAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATCTTCACTCTCGTTAGATTTGCATACTAACCACAGTCCAGATG  550

seq1  TGCCATAACTTAGCGGGCCAGTCTTCATTCTGTGTTTGGCTTTTACAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAACTTAGCGGGCCAGTCTTCATTCTGTGTTTGGCTTTTACAGAC  600

seq1  AGCATCATCACAAGGAATCTTCTATAAACGATGCTAGGCAGGTGTGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATCACAAGGAATCTTCTATAAACGATGCTAGGCAGGTGTGTGAA  650

seq1  TATCTGCCTCCCTCTATCACCTCTTCTCCATGCTCAGTCCCACTTACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCTCCCTCTATCACCTCTTCTCCATGCTCAGTCCCACTTACCCC  700

seq1  ATCTGAGGAGGGTGGGAACAGGGGCGTGGCAGAACAAATGAGCAAAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGAGGGTGGGAACAGGGGCGTGGCAGAACAAATGAGCAAAAAGC  750

seq1  AGAGGGTTAGAAACCAAACCACCCCAGGCTGCCAGGTCCCTGGGCCTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTAGAAACCAAACCACCCCAGGCTGCCAGGTCCCTGGGCCTTAG  800

seq1  GAGTGAGGATGACAGACAGACCCAGGAGATCCTGGAAATTCCATCCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGATGACAGACAGACCCAGGAGATCCTGGAAATTCCATCCTCTG  850

seq1  GAAGGTCTGAGTTAGAAAGGAACTTGGGAGACCCTCCATCCCATCCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTGAGTTAGAAAGGAACTTGGGAGACCCTCCATCCCATCCTGAG  900

seq1  ATTCCCAGACCTGCTTAATCTCACCCAGAACACTCGTTCACACCCAGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGACCTGCTTAATCTCACCCAGAACACTCGTTCACACCCAGCCT  950

seq1  CCTGAACAGCCAGGGCTTGAGGCGGGGCAGTGGTTGGAATGGGATGCTAA  1000
      ||||||||| |||||||||||   ||||||||  ||||   ||||||| |
seq2  CCTGAACAG-CAGGGCTTGAG--CGGGCAGTG--TGGA--TGGATGCT-A  992

seq1  CAGTGTTGAGATGTCCCAGGATTTCTTGGCTCCTTGCTAAAGATAAGATT  1050
      ||||||||||||||||   ||||   |||||||||||| |||||||||| 
seq2  CAGTGTTGAGATGTCC--AGATT--CTGGCTCCTTGCT-AAGATAAGATG  1037

seq1  GCTAATTCGATGCGACTGGGCTGGGTCTCAAGACTCTGTCTTCCTTGAGA  1100
      ||||| ||||||||||| ||||||||    ||||| |||||| ||||| |
seq2  GCTAA-TCGATGCGACT-GGCTGGGT---TAGACTTTGTCTT-CTTGA-A  1080

seq1  TGTCTGCAAGCTCCTGGGATCTGATGCTCT  1130
       |||||||  |||   ||||||||||||||
seq2  AGTCTGCAGCCTC--TGGATCTGATGCTCT  1108

seq1: chr11_104196125_104196907
seq2: B6Ng01-059M08.g_70_857 (reverse)

seq1  AACAAGAAAACAAACAACAAAACCAAACCAACCAAAGGAGGATCT-AAAT  49
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  AACAAGAAAACAAACAACGAAACCAAACCAACCAAAGGAGGATCTAAAAT  50

seq1  TCCTT-AAATTCACT-AAAAACTGTGAAAATTTCCAGCATATGATGTTTG  97
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAATTCACTAAAAAACTGTGAAAATTTCCAGCATATGATGTTTG  100

seq1  AATATC-AAACGCAGAGATTTCTGAAGC-TTTAATGCCAATAGTAGTGAG  145
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  AATATCAAAACGCAGAGATTTCTGAAGCTTTTAATGCCAATAGTAGTGAG  150

seq1  TCTGTATAGTCTCATTTTCCGCTCATCTGTGAGCTGGGCGCTGAGCTGTG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGTCTCATTTTCCGCTCATCTGTGAGCTGGGCGCTGAGCTGTG  200

seq1  ACTGTTGCTGCCAGATGCCGACTCTTGAGCGGGACAACAGGAGGCGAGGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGCTGCCAGATGCCGACTCTTGAGCGGGACAACAGGAGGCGAGGT  250

seq1  GGGTGCCACCTCTGCCTCCCGGCCAGTCTTGCTGCCTGAGGTGCGGCGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCACCTCTGCCTCCCGGCCAGTCTTGCTGCCTGAGGTGCGGCGAG  300

seq1  TGCAGCGGGCTGCCGTGTCCTGTGCATCCAGCTGCTCCTCACATTCTGCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCGGGCTGCCGTGTCCTGTGCATCCAGCTGCTCCTCACATTCTGCC  350

seq1  TGGGGACTGTAGGCCAGAGGGAAGGTCCGTCGTTCCCATGGCTGGACTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTGTAGGCCAGAGGGAAGGTCCGTCGTTCCCATGGCTGGACTGA  400

seq1  CTGTGGACAGACAAGATGATCTGGTGATGACCAGTTTCCAGAGCCAAGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACAGACAAGATGATCTGGTGATGACCAGTTTCCAGAGCCAAGGC  450

seq1  CCTGACCTCAAACTTGGGGAGAAGTTTATCGAGACTGCTCCCAAGGTGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTCAAACTTGGGGAGAAGTTTATCGAGACTGCTCCCAAGGTGGG  500

seq1  CTTCCCTAGGAACAATGACCAACCACACTTCATTTCAAAACAACAGAGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTAGGAACAATGACCAACCACACTTCATTTCAAAACAACAGAGAG  550

seq1  AAGAGCTTTATCTTCGGCACATGCTGCCCCCCTCCCTGTTCTACCTCATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTTATCTTCGGCACATGCTGCCCCCCTCCCTGTTCTACCTCATA  600

seq1  TCTTGCCCTCCCTCCACTCAAAGGAGATACCCTCTCCTCACCTGTTCATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCCTCCCTCCACTCAAAGGAGATACCCTCTCCTCACCTGTTCATC  650

seq1  TAGTCCCAGCTCTGGTGTGGAACATCGGGTGTCTTCACTGGCCAGGTGTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCAGCTCTGGTGTGGAACATCGGGTGTCTTCACTGGCCAGGTGTC  700

seq1  GCAGACTGTCCCGAGCCACAGGGGTGAGAGGGGCTGAGTGTAGTTCTGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGTCCCGAGCCACAGGGGTGAGAGGGGCTGAGTGTAGTTCTGGG  750

seq1  CTAATGGGACTCCTAGGAGATTGACCATGGGAGAATTC  783
      ||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGGACTCCTAGGAGATTGACCATGGGAGAATTC  788