BAC Information

Click to search

BAC

Clone NameB6Ng01-060B21
Chromosome11 (Build37)
Map Location 75,042,418 - 75,149,614
singlet/doubletdoublet
Overlap geneRtn4rl1, Rpa1
Upstream geneOlfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1
Downstream geneSmyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060B21.bB6Ng01-060B21.g
ACCDH881190DH881191
length1,0301,094
definitionDH881190|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B21, 5' end.DH881191|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,149,060 - 75,149,614)(75,042,418 - 75,043,519)
sequence
gaattcagtctattttatgactcccttctgggaagtgccactctctgctt
aggctttcttgtatgctaggttctttgtcctttgtgtgccttgttccttt
cctttcataccccgtgtgttgaattgttctgtctgtgccattccctctta
tctatacatgattaatatgaacagtcctggacagctctgccagccttgat
gtttgttctgccgttgtctaggcaaggcacatcttcttgcaggcttgcct
gctggggatccagtgtcttccactccaggctctcttgagtgttagcaagc
agtgcttctggctgctagcagttgtggttggttgtctccttccagcttgt
cagggattgaactcgtaccaggcttagacagcaggtttttctacccactg
agccacattacagcctattttaatgtttgtaaatttaaaacaaaaaaaat
gtgtgtgtgtggtgtgtgcaccccttcacatactcatagaacccccaatg
tcttcctctgtggctctctaccttattcccttgcaaacttctcactggcc
cagagatcactgggttttttgcctaggtgggagttcaaagtgccccatcc
accctgcctccagcccttctagactgggtaagagaaaggcaccaccaatt
agttaacttttcagacgtgctggggatccgaactcatgcttacacaggta
ctctcaatcactgagctgtcgccccagcccccactttgttctttaaaaaa
catttgagatgcattttttttttaagttttatgtatatgggggatttgtc
tgctacatatatgtctgtgtaccatgtgtgtgcctggtatccatagactg
cacaagaagacattggatcctctggaactggaattaggagtcattatgtg
ggattctgggaatcaaatcctggtcctctggaagagcagccagtgctctt
acctctgagccaacttctctagtcagatactttgtttttgttttttgttt
ttttattacgacgctctagtaaagcaggcg
gaattcacctgtctccacccctgagattacaggcacacgaagccatgtca
tgttttccatgagggtgccagggattcaaactcaagttctcaggcttgca
aattaagctctctcacccacggagccatgtctgtagccccaagggctgct
ttataaggttgtcctgaggattagtacaaaatgatcccacggcgtacctc
acagagcagtgagcacttagtaagtactcaataaatgttgattactatga
ccacacatggtctcgctgtggccgtctagatggctttttttccataggta
aagcctggttcccgttagctagtagtggtagagagagacaagacaggggt
ggttggtgtctcttgagcagagacagagttgtcaaggttctactcaaggg
accatctgcttgttcctcacctggggatttcttattatcctgtcaggctt
ggagttccctgcagtctgagaggcaggacaccccgaggaggtctccagcc
aatcatgtcctccctcaccctggctgcaggaggctggcctgggaacgcta
tgatttacagtgatgaaatgtaaattgcagagattcctggcttcctgtgc
agccaggatcccatcagcatctcattccccttacctggggctcctcccgg
tctcatttggcagattctgttggcggagagcctcctcaggaccagagcgg
cttgcttcctacatctatcacacctgcgctgtgacaatgtaatttttatc
tctggttgtttatttctcagatggaactacttgtaaattccaagaagaaa
atatatccctgtgtgtgacagagccagcccagggcgattaatctgggctt
ttaagctgggaacacacaccaggtttatgctgctccatgcataagtgtcc
cgtaatcaaccataaccattaattgttcactgatggagcagtggcccaga
aggggctgggatccatgggacttgatctaaatggatggacaagatcttca
tttccatcagcaggtggttagcagactcttgggacaaagtgggagggctt
gtgctttctggcaacagtacaaggtggtgcagaaacccatgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_75149060_75149614
seq2: B6Ng01-060B21.b_526_1077 (reverse)

seq1  CGCCTGCTTTACTAAGAGCGTCTGTAAATAAAAAAAACAAAAAACAAAAA  50
      ||||||||||||| |||||||| ||||   ||||||||||||||| ||||
seq2  CGCCTGCTTTACT-AGAGCGTC-GTAA--TAAAAAAACAAAAAAC-AAAA  45

seq1  ACAAAGTATCTTGGCTAGAG-AGTTGGCTCAGAGGTTAAGAGCACTGGCT  99
      |||||||||| || |||||| |||||||||||||| ||||||||||||||
seq2  ACAAAGTATC-TGACTAGAGAAGTTGGCTCAGAGG-TAAGAGCACTGGCT  93

seq1  GCTCTTCCAGAGGACCAGG-TTTGATTCCCAGAAT-CCACATAATGACTC  147
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  GCTCTTCCAGAGGACCAGGATTTGATTCCCAGAATCCCACATAATGACTC  143

seq1  CTAATTCCAGTTCCAGAGGATCCAATGTCTTCTTGTGCAGTCTATGGATA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCCAGTTCCAGAGGATCCAATGTCTTCTTGTGCAGTCTATGGATA  193

seq1  CCAGGCACACACATGGTACACAGACATATATGTAGCAGACAAATCCCCCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACACACATGGTACACAGACATATATGTAGCAGACAAATCCCCCA  243

seq1  TATACATAAAACTT-AAAAAAAAATGCATCTCAAATGTTTTTTAAAGAAC  296
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATACATAAAACTTAAAAAAAAAATGCATCTCAAATGTTTTTTAAAGAAC  293

seq1  AAAGTGGGGGCTGGGGCGACAGCTCAGTGATTGAGAGTACCTGTGTAAGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGGGCTGGGGCGACAGCTCAGTGATTGAGAGTACCTGTGTAAGC  343

seq1  ATGAGTTCGGATCCCCAGCACGTCTGAAAAGTTAACTAATTGGTGGTGCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCGGATCCCCAGCACGTCTGAAAAGTTAACTAATTGGTGGTGCC  393

seq1  TTTCTCTTACCCAGTCTAGAAGGGCTGGAGGCAGGGTGGATGGGGCACTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTACCCAGTCTAGAAGGGCTGGAGGCAGGGTGGATGGGGCACTT  443

seq1  TGAACTCCCACCTAGGCAAAAAACCCAGTGATCTCTGGGCCAGTGAGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCCACCTAGGCAAAAAACCCAGTGATCTCTGGGCCAGTGAGAAG  493

seq1  TTTGCAAGGGAATAAGGTAGAGAGCCACAGAGGAAGACATTGGGGGTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGGGAATAAGGTAGAGAGCCACAGAGGAAGACATTGGGGGTTCT  543

seq1  ATGAGTATG  555
      |||||||||
seq2  ATGAGTATG  552

seq1: chr11_75042418_75043519
seq2: B6Ng01-060B21.g_68_1161

seq1  GAATTCACCTGTCTCCACCCCTGAGATTACAGGCACACGAAGCCATGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGTCTCCACCCCTGAGATTACAGGCACACGAAGCCATGTCA  50

seq1  TGTTTTCCATGAGGGTGCCAGGGATTCAAACTCAAGTTCTCAGGCTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCATGAGGGTGCCAGGGATTCAAACTCAAGTTCTCAGGCTTGCA  100

seq1  AATTAAGCTCTCTCACCCACGGAGCCATGTCTGTAGCCCCAAGGGCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCTCTCTCACCCACGGAGCCATGTCTGTAGCCCCAAGGGCTGCT  150

seq1  TTATAAGGTTGTCCTGAGGATTAGTACAAAATGATCCCACGGCGTACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGGTTGTCCTGAGGATTAGTACAAAATGATCCCACGGCGTACCTC  200

seq1  ACAGAGCAGTGAGCACTTAGTAAGTACTCAATAAATGTTGATTACTATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAGTGAGCACTTAGTAAGTACTCAATAAATGTTGATTACTATGA  250

seq1  CCACACATGGTCTCGCTGTGGCCGTCTAGATGGCTTTTTTTCCATAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATGGTCTCGCTGTGGCCGTCTAGATGGCTTTTTTTCCATAGGTA  300

seq1  AAGCCTGGTTCCCGTTAGCTAGTAGTGGTAGAGAGAGACAAGACAGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGTTCCCGTTAGCTAGTAGTGGTAGAGAGAGACAAGACAGGGGT  350

seq1  GGTTGGTGTCTCTTGAGCAGAGACAGAGTTGTCAAGGTTCTACTCAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTGTCTCTTGAGCAGAGACAGAGTTGTCAAGGTTCTACTCAAGGG  400

seq1  ACCATCTGCTTGTTCCTCACCTGGGGATTTCTTATTATCCTGTCAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGCTTGTTCCTCACCTGGGGATTTCTTATTATCCTGTCAGGCTT  450

seq1  GGAGTTCCCTGCAGTCTGAGAGGCAGGACACCCCGAGGAGGTCTCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCCCTGCAGTCTGAGAGGCAGGACACCCCGAGGAGGTCTCCAGCC  500

seq1  AATCATGTCCTCCCTCACCCTGGCTGCAGGAGGCTGGCCTGGGAACGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTCCTCCCTCACCCTGGCTGCAGGAGGCTGGCCTGGGAACGCTA  550

seq1  TGATTTACAGTGATGAAATGTAAATTGCAGAGATTCCTGGCTTCCTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACAGTGATGAAATGTAAATTGCAGAGATTCCTGGCTTCCTGTGC  600

seq1  AGCCAGGATCCCATCAGCATCTCATTCCCCTTACCTGGGGCTCCTCCCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGATCCCATCAGCATCTCATTCCCCTTACCTGGGGCTCCTCCCGG  650

seq1  TCTCATTTGGCAGATTCTGTTGGCGGAGAGCCTCCTCAGGACCAGAGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTGGCAGATTCTGTTGGCGGAGAGCCTCCTCAGGACCAGAGCGG  700

seq1  CTTGCTTCCTACATCTATCACACCTGCGCTGTGACAATGTAATTTTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCCTACATCTATCACACCTGCGCTGTGACAATGTAATTTTTATC  750

seq1  TCTGGTTGTTTATTTCTCAGATGGAACTACTTGTAAATTCCAAGAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTGTTTATTTCTCAGATGGAACTACTTGTAAATTCCAAGAAGAAA  800

seq1  ATATATCCCTGTGTGTGACAGAGCCAGCCCAGGGCGATTAATCTGGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCCTGTGTGTGACAGAGCCAGCCCAGGGCGATTAATCTGGGCTT  850

seq1  TTAAGCTGGGAACACACACCAGGTTTATGCTGCTCCATGCATAAGTGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGGGAACACACACCAGGTTTATGCTGCTCCATGCATAAGTGTCC  900

seq1  CGTAATCAACCATAACCATTAATTGTTCACTGATGGAGCAGTGGCCCCAG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CGTAATCAACCATAACCATTAATTGTTCACTGATGGAGCAGTGG-CCCAG  949

seq1  AAGGGGCTGGGATCCATGGGACTTGATCTAGATGGATGGGACAAGAGTCT  1000
      |||||||||||||||||||||||||||||| |||||| |||||||| |||
seq2  AAGGGGCTGGGATCCATGGGACTTGATCTAAATGGAT-GGACAAGA-TCT  997

seq1  TCATTTCCCATCAGCCAGGTGGTTAGCAGACCCTTGGGACAAAGTGGGA-  1049
      |||||| ||||||| |||||||||||||||| ||||||||||||||||| 
seq2  TCATTT-CCATCAG-CAGGTGGTTAGCAGACTCTTGGGACAAAGTGGGAG  1045

seq1  GGCTTGTGGCTTCTGGCCAACAGGTACAAAGGTGGTGGCAGAGACCCATG  1099
      ||||||||  |||||| ||||| |||| |||||||| ||||| |||||||
seq2  GGCTTGTGCTTTCTGG-CAACA-GTAC-AAGGTGGT-GCAGAAACCCATG  1091

seq1  TCA  1102
      |||
seq2  TCA  1094