BAC Information

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BAC

Clone NameB6Ng01-060G21
Chromosome11 (Build37)
Map Location 71,579,801 - 71,712,056
singlet/doubletdoublet
Overlap geneWscd1
Upstream geneZfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
Downstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060G21.bB6Ng01-060G21.g
ACCDH881404DH881405
length1,1031,085
definitionDH881404|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G21, 5' end.DH881405|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,579,801 - 71,580,894)(71,710,953 - 71,712,056)
sequence
gaattcattaagccagtgttgcaaggactcatgtgtaaaaatgccagcta
ccctgatctgatcatcccacatatctatcatcacactgtaccccaccaat
acgtacaatgaataatttttttttgaaaactcagatccaagcataggaaa
gaggggtggtggagacaagctgcagtcaggctgactctgggttcttggca
ctacctctgggtgcacagtaggctgttaactatgtacacagtaggccatt
aactgagcaaaggagcagaaagctgcccagctgcccacttggctcttgta
ctgaggggaagtagaagaggaccctcatcccctccactttctggagaagt
acatgggccaggcagggctggagatcccagcttttccccactggtagcag
gtaggcagactttcccagggatggaagcccatggcaagggccctccccag
cccctgggcctatgatctcagctgtgcttcatccttgcaggcaattacct
gggatgcttcagtgaggagggccaggagagaactctgaagggagcagtgt
tttacgacttgagaaagatgaccgtgtcacactgccaggatgcctgtgct
gagcggtgagtgttgagctaggctgttgacggcactggcatgaggttaga
agaccgcctcagaaccaagggacatcatggttgctggttggccatcctga
tgccattacacctccattcattagactctaatttccaggagaaagtgcat
cagcatgctagcagctatcctggcttccatccctgctgtgctagggacac
gccctgagacccatgggggttctttgagcaggctatagatgaggatgaag
acccaccaaaaactagtttactcatctgtttaaatgaaataaagggacaa
atggacttcagttaaaataaagttgagtaccagtccagcggttagaaaat
ccatgtctacttgtgctacaacaaaagttgcctttctagatactatcagc
tttcttctggtgatcagccatctgtctctaacagaccatcacagctcgtg
ttgtactcaaggccatgggcaatgtgcatggtggtcaatatgcatgttgt
gtt
gaattctcagcagctcctgtgccatgcttcctgccttgatgacaatggac
tggacctctgaacctgtaagctagcaccaattaaatgtgctttataagag
ttgccttggtcatggtgtctcttcacaatggaaaccctaactaagacatg
gggcttggtcagatgcactacaaaatcaacagacatgatgggaatgatgc
cctagaatggtctgtgcagtggagattccccatttgtgctttggccatca
ctttgagaaaattatttttttccccagtagctgcttcctgtccatactgg
ctaggctcaagaacaaatacaaaaggactgaacagaacccattctagccc
acgccttagccttacagcaggataactcagccggctttgcctggatcagg
cactgctcaactgacttacagacttcggggaaataagttctcaggttcca
acagaagagatttgtcacagttgctgtgatttgagatgagttgactgaca
cccagtgtttcctatttactggctcatccagttgcagaaaactctcataa
cacagcaaggtcaaaaaaattgctttctttttattagcttttttttttag
aaggagaaattgaagctcaaagagactaactgacctattaagtagttaag
ccagccttttagagttttcccacgtgctaggatgacttctctgctgggga
tctgggagctgagagatgtccttgggtaccaagggtggaaagatatactt
cctccccttcatcatttcacccaaggccagtctgtcaataggactgggag
ggctgagtgacctcccagggacactaatgattggtctatagttctctcta
tggcattcctgtgacttgggttggtgccaactatcactgggcaaagaaaa
agcagtttgtcatgtgtaaatttaacagcaataatgccagctactaaatt
gatatcatttcttaacgatgtgtcagccctaatcagtctaatttatattg
tcacatgatgtaatggatccaccaggcatggccttcaaatacgaatccaa
tcttgtagagaataagtgatttcccagtatgactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71579801_71580894
seq2: B6Ng01-060G21.b_43_1145

seq1  GAATTCATTAAGCCAGTGTTGCAAGGACTCATGTGTAAAAATGCCAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGCCAGTGTTGCAAGGACTCATGTGTAAAAATGCCAGCTA  50

seq1  CCCTGATCTGATCATCCCACATATCTATCATCACACTGTACCCCACCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATCTGATCATCCCACATATCTATCATCACACTGTACCCCACCAAT  100

seq1  ACGTACAATGAATAATTTTTTTTTGAAAACTCAGATCCAAGCATAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACAATGAATAATTTTTTTTTGAAAACTCAGATCCAAGCATAGGAAA  150

seq1  GAGGGGTGGTGGAGACAAGCTGCAGTCAGGCTGACTCTGGGTTCTTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGGTGGAGACAAGCTGCAGTCAGGCTGACTCTGGGTTCTTGGCA  200

seq1  CTACCTCTGGGTGCACAGTAGGCTGTTAACTATGTACACAGTAGGCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTGGGTGCACAGTAGGCTGTTAACTATGTACACAGTAGGCCATT  250

seq1  AACTGAGCAAAGGAGCAGAAAGCTGCCCAGCTGCCCACTTGGCTCTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCAAAGGAGCAGAAAGCTGCCCAGCTGCCCACTTGGCTCTTGTA  300

seq1  CTGAGGGGAAGTAGAAGAGGACCCTCATCCCCTCCACTTTCTGGAGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGAAGTAGAAGAGGACCCTCATCCCCTCCACTTTCTGGAGAAGT  350

seq1  ACATGGGCCAGGCAGGGCTGGAGATCCCAGCTTTTCCCCACTGGTAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGCCAGGCAGGGCTGGAGATCCCAGCTTTTCCCCACTGGTAGCAG  400

seq1  GTAGGCAGACTTTCCCAGGGATGGAAGCCCATGGCAAGGGCCCTCCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGACTTTCCCAGGGATGGAAGCCCATGGCAAGGGCCCTCCCCAG  450

seq1  CCCCTGGGCCTATGATCTCAGCTGTGCTTCATCCTTGCAGGCAATTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGCCTATGATCTCAGCTGTGCTTCATCCTTGCAGGCAATTACCT  500

seq1  GGGATGCTTCAGTGAGGAGGGCCAGGAGAGAACTCTGAAGGGAGCAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTTCAGTGAGGAGGGCCAGGAGAGAACTCTGAAGGGAGCAGTGT  550

seq1  TTTACGACTTGAGAAAGATGACCGTGTCACACTGCCAGGATGCCTGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGACTTGAGAAAGATGACCGTGTCACACTGCCAGGATGCCTGTGCT  600

seq1  GAGCGGTGAGTGTTGAGCTAGGCTGTTGACGGCACTGGCATGAGGTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGTGAGTGTTGAGCTAGGCTGTTGACGGCACTGGCATGAGGTTAGA  650

seq1  AGACCGCCTCAGAACCAAGGGACATCATGGTTGCTGGTTGGCCATCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGCCTCAGAACCAAGGGACATCATGGTTGCTGGTTGGCCATCCTGA  700

seq1  TGCCATTACACCTCCATTCATTAGACTCTAATTTCCAGGAGAAAGTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTACACCTCCATTCATTAGACTCTAATTTCCAGGAGAAAGTGCAT  750

seq1  CAGCATGCTAGCAGCTATCCTGGCTTCCATCCCTGCTGTGCTAGGGACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCTAGCAGCTATCCTGGCTTCCATCCCTGCTGTGCTAGGGACAC  800

seq1  GCCCTGAGACCCATGGGGGTTCTTTGAGCAGGCTATAGATGAGGATGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGACCCATGGGGGTTCTTTGAGCAGGCTATAGATGAGGATGAAG  850

seq1  ACCCACCAAAAACTAGTTTACTCATCTGTTTAAAATGAAATAAAGGGACA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCCACCAAAAACTAGTTTACTCATCTGTTT-AAATGAAATAAAGGGACA  899

seq1  AATGGACTTCAGTTAAAATAAAGTTGAGTACCAGTCCAGCGGTTAGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTTCAGTTAAAATAAAGTTGAGTACCAGTCCAGCGGTTAGAAAA  949

seq1  TCCATGTCTACTTGTGCTTACAACAAAAGTTGCCTTTCTAGATACTATCA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCATGTCTACTTGTGC-TACAACAAAAGTTGCCTTTCTAGATACTATCA  998

seq1  GCTTTCCTTCTGGTGATCAGCCATCTGTCTCTAACAGGACCATCACAGCT  1050
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTTT-CTTCTGGTGATCAGCCATCTGTCTCTAACA-GACCATCACAGCT  1046

seq1  CGTGTGTGTACTCGAGTGCA-----CATGTGCAT--------ATGTGCAT  1087
      ||||| ||||||| ||  ||      ||||||||        || |||||
seq2  CGTGT-TGTACTCAAGGCCATGGGCAATGTGCATGGTGGTCAATATGCAT  1095

seq1  G-TGTGTT  1094
      | ||||||
seq2  GTTGTGTT  1103

seq1: chr11_71710953_71712056
seq2: B6Ng01-060G21.g_65_1149 (reverse)

seq1  CAGTCATAACTGGTGGAAATTCACTTTAGTCTCTTACATGATTGGATCCT  50
      ||||||| ||||  ||||| |||| ||| |||| |||| |||||||| | 
seq2  CAGTCAT-ACTG--GGAAA-TCAC-TTATTCTC-TACAAGATTGGATTC-  43

seq1  GTATTTGTGAAGGCCCATGCCTGGTGGGACCATTACATCATGTTGACAAT  100
      |||||  |||||| |||||||||||||  ||||||||||||| |||||||
seq2  GTATT--TGAAGG-CCATGCCTGGTGGATCCATTACATCATG-TGACAAT  89

seq1  ATAAATTAGACTGATTAGGGGCTGACAACATCGTTAAG-AATGATATACA  149
      ||||||||||||||||| |||||||| ||||||||||| |||||||| ||
seq2  ATAAATTAGACTGATTA-GGGCTGAC-ACATCGTTAAGAAATGATAT-CA  136

seq1  ATTTAGTAGCTGGCATTATTGCCTGTTAAATTTACACATGACAAACTGCC  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  ATTTAGTAGCTGGCATTATTG-CTGTTAAATTTACACATGACAAACTGC-  184

seq1  TTCTATCTTTGCCCAGTGATAGTTGGGCACCAACCCAAGTCACAGGAAAT  249
       | | ||||||||||||||||||| ||||||||||||||||||||| |||
seq2  -TTTTTCTTTGCCCAGTGATAGTT-GGCACCAACCCAAGTCACAGG-AAT  231

seq1  GCCATAGAGAGAACTATAGACCAATCATTAGTTGTCCCTGGGAGGTCACT  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCATAGAGAGAACTATAGACCAATCATTAG-TGTCCCTGGGAGGTCACT  280

seq1  CAGCCCTCCCAGTCCTATTGACAGACTGGCCTTGGGTGAAATGATGAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCCCAGTCCTATTGACAGACTGGCCTTGGGTGAAATGATGAAGG  330

seq1  GGAGGAAGTATATCTTTCCACCCTTGGTACCCAAGGACATCTCTCAGCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGTATATCTTTCCACCCTTGGTACCCAAGGACATCTCTCAGCTC  380

seq1  CCAGATCCCCAGCAGAGAAGTCATCCTAGCACGTGGGAAAACTCTAAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCCCCAGCAGAGAAGTCATCCTAGCACGTGGGAAAACTCTAAAAG  430

seq1  GCTGGCTTAACTACTTAATAGGTCAGTTAGTCTCTTTGAGCTTCAATTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTAACTACTTAATAGGTCAGTTAGTCTCTTTGAGCTTCAATTTC  480

seq1  TCCTTCTAAAAAAAAAAGCTAATAAAAAGAAAGCAATTTTTTTGACCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAAAAAAAAAAGCTAATAAAAAGAAAGCAATTTTTTTGACCTTG  530

seq1  CTGTGTTATGAGAGTTTTCTGCAACTGGATGAGCCAGTAAATAGGAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTATGAGAGTTTTCTGCAACTGGATGAGCCAGTAAATAGGAAACA  580

seq1  CTGGGTGTCAGTCAACTCATCTCAAATCACAGCAACTGTGACAAATCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTCAGTCAACTCATCTCAAATCACAGCAACTGTGACAAATCTCT  630

seq1  TCTGTTGGAACCTGAGAACTTATTTCCCCGAAGTCTGTAAGTCAGTTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGAACCTGAGAACTTATTTCCCCGAAGTCTGTAAGTCAGTTGAG  680

seq1  CAGTGCCTGATCCAGGCAAAGCCGGCTGAGTTATCCTGCTGTAAGGCTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTGATCCAGGCAAAGCCGGCTGAGTTATCCTGCTGTAAGGCTAA  730

seq1  GGCGTGGGCTAGAATGGGTTCTGTTCAGTCCTTTTGTATTTGTTCTTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGGCTAGAATGGGTTCTGTTCAGTCCTTTTGTATTTGTTCTTGAG  780

seq1  CCTAGCCAGTATGGACAGGAAGCAGCTACTGGGGAAAAAAATAATTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCAGTATGGACAGGAAGCAGCTACTGGGGAAAAAAATAATTTTCT  830

seq1  CAAAGTGATGGCCAAAGCACAAATGGGGAATCTCCACTGCACAGACCATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGATGGCCAAAGCACAAATGGGGAATCTCCACTGCACAGACCATT  880

seq1  CTAGGGCATCATTCCCATCATGTCTGTTGATTTTGTAGTGCATCTGACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCATCATTCCCATCATGTCTGTTGATTTTGTAGTGCATCTGACCA  930

seq1  AGCCCCATGTCTTAGTTAGGGTTTCCATTGTGAAGAGACACCATGACCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCATGTCTTAGTTAGGGTTTCCATTGTGAAGAGACACCATGACCAA  980

seq1  GGCAACTCTTATAAAGCACATTTAATTGGTGCTAGCTTACAGGTTCAGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTCTTATAAAGCACATTTAATTGGTGCTAGCTTACAGGTTCAGAG  1030

seq1  GTCCAGTCCATTGTCATCAAGGCAGGAAGCATGGCACAGGAGCTGCTGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTCCATTGTCATCAAGGCAGGAAGCATGGCACAGGAGCTGCTGAG  1080

seq1  AATTC  1104
      |||||
seq2  AATTC  1085