BAC Information

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BAC

Clone NameB6Ng01-060P03
Chromosome11 (Build37)
Map Location 24,859,871 - 24,860,013
singlet/doubletsinglet
Overlap genenone
Upstream geneA830031A19Rik, LOC100042256, Bcl11a, LOC100042282
Downstream gene5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060P03.bB6Ng01-060P03.g
ACCDH881771DH881772
length1,229884
definitionDH881771|Mus musculus domesticus DNA, BAC clone: B6Ng01-060P03, 5' end.DH881772|Mus musculus domesticus DNA, BAC clone: B6Ng01-060P03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaaaagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctctcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgttgccgcctcagaagctctgtggctcttgccgggaaggtggc
tggttgtctggagctgaagatggtgccgccccagaatctctgtgactctc
tcgcccgtcccagaaacggctggcactctgtattccacacggtcacccgt
gcagcctgccctccgcggagtcccggagccaagaaggctcccgccagcgc
ctgtgccacaaacctctcaggccaggcagacccccgtgctctcaccagga
aggtggccggctgtctggagctgaagatggcgccgcccagaagctctttg
actctctcgcccgtcccagaaacggctggcactctgtattccacacggtc
acccgtgcagcctgccctccgcggagtcccggagccaagaaggctcccgc
cggcgcctgtgccacaacctctcagccaggcagacccccgtgctctcacc
aggaagtggccggctgtctggagctgagatggcgtcgcctagaagctctg
cgactctctcgcccgtccagaaacggctggcactctgtattccacacggt
cacccgtgcagctgccttcgcgagtccggagcagaggcttccggcagccc
tagtcacaactctcaggcagcgaacctcgtgccttcacaggaagtgcgct
gtctggagactgaaatgaccccgaagtcttggactcttctcgtccgaacg
tgactggatccacggtacctggacctcctcgattcggaccaacggtctcg
gctttgcactactcatgaggcacgagact
gaattctgtactgaaaccatctggccctggttttcttttttggttgggga
aattttagtgactccttctttctttaggtgttataggactattttagtag
tttacccactcttggtttaactttggtaactggtatctgtctaaaaaaat
tatccacttcatttagattttcaaattttgtagagtgcaggcttttgaag
taagatgtaattgtgattgtttgaatttcctcagtatgtgttgtatcttc
cttttcatttctgattttgttaattctggtactgtcttttagttggtttc
actaagggtttgtctgttttgttgattttattgaataacttgctttgggg
acatggatcttcagaaatgagaagttctcttggtggtgtgtttctttgtt
gagtatgaagtgtccttccccatctcttttgattacttttgcttggacgt
ctgtttcattagataacagaatgattcctactacaggttgtttcttgtgt
ccatttacttggaaaacacttttgcagtctttttctttgagtaatggcta
tcctgatatatgtttcttctatacagcaaaatgatggatcctgtttaggc
attcagtctgttggcctgtgtctttttattggggaattgagtccattgat
tttgagagatactaatgaccaaagattattaattcctgcttttgtttgtt
tgtttgtttgtttgtttgtttggttttttttttttgagacatggtttctc
tgtagcccgtagccctgggtgtcctggaactcactttgtagaccaggctg
gccttgaactcagaaatctgcctgcctctgccttccaagtgctgggacta
aaggcatgagccaccacgcctggctattcctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24859871_24860013
seq2: B6Ng01-060P03.g_682_950 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AGCAGGAATAGCCAGGCGTGGTGGCTCATGCCTTTAGTCCCAGCACTTGG  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAA  100

seq1  ---AG---CAGGAATAGCCAGG--AAAGAAGTCCAGA-AAGCCA---CAC  38
         ||   |||| | | |||||   | |   | |||| || |||   | |
seq2  GTGAGTTCCAGG-ACACCCAGGGCTACGGGCTACAGAGAAACCATGTCTC  149

seq1  AAACATAATTATACC--TCTAA-AAACAGAAATATCAAGAAACAA-----  80
      ||| | ||  | |||   | || ||||| | | |  || ||||||     
seq2  AAA-AAAAAAAAACCAAACAAACAAACAAACAAACAAACAAACAAAAGCA  198

seq1  -----CAATAAGTTT---TCCTTAATATCTCTAAATATCAATGGATTCAA  122
            |||||  ||   || ||| ||||||| || ||||||||| ||||
seq2  GGAATTAATAATCTTTGGTCATTAGTATCTCTCAAAATCAATGGACTCAA  248

seq1  TTCCCCAATAAAAAGACACAG  143
      |||||||||||||||||||||
seq2  TTCCCCAATAAAAAGACACAG  269