BAC Information

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BAC

Clone NameB6Ng01-060P15
Chromosome11 (Build37)
Map Location 102,271,456 - 102,425,315
singlet/doubletdoublet
Overlap geneGrn, BC025575, Itga2b, Mdk-ps1
Upstream geneAarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39
Downstream geneLOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060P15.bB6Ng01-060P15.g
ACCDH881793DH881794
length1661,095
definitionDH881793|Mus musculus domesticus DNA, BAC clone: B6Ng01-060P15, 5' end.DH881794|Mus musculus domesticus DNA, BAC clone: B6Ng01-060P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,271,456 - 102,271,621)(102,424,201 - 102,425,315)
sequence
actatatgcaccaggctggccttgaactcccagagatccacccacatctg
tctcccaagtgctggggttagaggtgtgtgccagcatccttgatcttaag
ccacacacactgggttgtttaggagcaaatgaatctaaagtctcaaatgg
tgagggggggagggga
gaattctccattcacagcttgcaagaggtttcaattaaactatgaagtaa
gggactcgggactactctgcctttgcaagtccccataattttttctagtt
tttttttttttttttttttttttggtttggggtattttttttccatctta
agaccaccctgtaggagagggtagcgctcaggcagacttagcaggggcca
gaactcttcacttgttcatcttccaatgtgaccacaatgaattaatcttc
cttttaactgtggctttttttttcttgactcagtgtcttaatgaccaaaa
cctagcttgtttaacaggtctcacagtatagttgtccttatcagaggaaa
gtttcagatgaaggtttcgtcttactcttactgggaggagtaatgagagg
aggccaccgaggtgatgggtcaccaggacagaccttcacaaggctatcaa
tactgtaactgtgggtttttccacccatgccccagttcccaaataatgac
tcgggggcttataatctatttaaaaaaatgctaggcctgttcccatagct
tgtaacttatgctaacctggttatactattctctgtctgccaaatggcta
gttacctctcctcagtttcatatgtccaacttcctctgatactgggcagg
gaatctccatcttgactctgtcccagaatccccttctcttgctggctatc
ccacatcctaatcccgcctcagcttattggccattaaccttttattgaca
ggtgatccttccatatggtaccaaagagattctctctacaagactgggcc
tgaggatcttgtgctggctaattttgtttgtgttttttttttccccccca
acttgaccatgggaacagggttaacatcaagtcaaggggaggagcctcaa
ttgagaaaatgcctccatcccaaccatccataggcacatgtggggcaatt
ttggattgatgattggttgatctgggcaggtgtctggttgcaaagaaagc
agcttaaggagcacagggagcgagtcgttagcagcaatcttccaggttct
gcatcagctctgcctcaagtccatcttggatccttgcctgacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102271456_102271621
seq2: B6Ng01-060P15.b_52_217

seq1  ACTATATGCACCAGGCTGGCCTTGAACTCCCAGAGATCCACCCACATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGCACCAGGCTGGCCTTGAACTCCCAGAGATCCACCCACATCTG  50

seq1  TCTCCCAAGTGCTGGGGTTAGAGGTGTGTGCCAGCATCCTTGATCTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAGTGCTGGGGTTAGAGGTGTGTGCCAGCATCCTTGATCTTAAG  100

seq1  CCACACACACTGGGTTGTTTAGGAGCAAATGAATCTAAAGTCTCAAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACACTGGGTTGTTTAGGAGCAAATGAATCTAAAGTCTCAAATGG  150

seq1  TGAGGGGGGGAGGGGA  166
      ||||||||||||||||
seq2  TGAGGGGGGGAGGGGA  166

seq1: chr11_102424201_102425315
seq2: B6Ng01-060P15.g_68_1162 (reverse)

seq1  GAAGTCAGGGCAAGGACTCAAGGATGAAACTTGGAGGCAGGAGCTGATGC  50
      ||||||| |||||||| || | ||||  |||| |||||| ||||||||||
seq2  GAAGTCA-GGCAAGGA-TCCAAGATG-GACTT-GAGGCA-GAGCTGATGC  45

seq1  AGAGACCTTGGAGGAATGCTGCTTACTGACTCGCTCCCTGTGGCTTCCTT  100
      ||| ||| |||| || ||||||| || |||||||||||||||   |||||
seq2  AGA-ACC-TGGAAGATTGCTGCTAAC-GACTCGCTCCCTGTG--CTCCTT  90

seq1  AGCCTGCTTTCTTATACAACCCAGGACCACCTGCCCAGATCAACCAATCA  150
      |  |||||||||| | ||| ||||   |||||||||||||||||||||||
seq2  AAGCTGCTTTCTT-TGCAA-CCAG--ACACCTGCCCAGATCAACCAATCA  136

seq1  TCAATCCAAAAATTGCCCCACATGTTTGCCTATGGATGGTTGGGATGGAG  200
      ||||||| ||||||||||||||||  ||||||||||||||||||||||||
seq2  TCAATCC-AAAATTGCCCCACATG--TGCCTATGGATGGTTGGGATGGAG  183

seq1  GCATTTTCTCAATTGAGGCTCCTCCCCTTGACCTTGATGTTAACCCTTGT  250
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  GCATTTTCTCAATTGAGGCTCCTCCCCTTGA-CTTGATGTTAACCC-TGT  231

seq1  TCCCATGGTCAAGTTGGGGGGGAAAAAAAAAACACAAACAAAATTAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGTCAAGTTGGGGGGGAAAAAAAAAACACAAACAAAATTAGCCA  281

seq1  GCACAAGATCCTCAGGCCCAGTCCTTGTAGAGAGAATCTCTTTGGTACCA  350
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCACAAGATCCTCAGGCCCAGT-CTTGTAGAGAGAATCTCTTTGGTACCA  330

seq1  TATGGAAGGATCACCTGTCAATAAAAGGTTAATGGCCAATAAGCTGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGGATCACCTGTCAATAAAAGGTTAATGGCCAATAAGCTGAGGC  380

seq1  GGGATTAGGATGTGGGATAGCCAGCAAGAGAAGGGGATTCTGGGACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAGGATGTGGGATAGCCAGCAAGAGAAGGGGATTCTGGGACAGAG  430

seq1  TCAAGATGGAGATTCCCTGCCCAGTATCAGAGGAAGTTGGACATATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGGAGATTCCCTGCCCAGTATCAGAGGAAGTTGGACATATGAAA  480

seq1  CTGAGGAGAGGTAACTAGCCATTTGGCAGACAGAGAATAGTATAACCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGAGGTAACTAGCCATTTGGCAGACAGAGAATAGTATAACCAGG  530

seq1  TTAGCATAAGTTACAAGCTATGGGAACAGGCCTAGCATTTTTTTAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAAGTTACAAGCTATGGGAACAGGCCTAGCATTTTTTTAAATAG  580

seq1  ATTATAAGCCCCCGAGTCATTATTTGGGAACTGGGGCATGGGTGGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGCCCCCGAGTCATTATTTGGGAACTGGGGCATGGGTGGAAAAA  630

seq1  CCCACAGTTACAGTATTGATAGCCTTGTGAAGGTCTGTCCTGGTGACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTTACAGTATTGATAGCCTTGTGAAGGTCTGTCCTGGTGACCCA  680

seq1  TCACCTCGGTGGCCTCCTCTCATTACTCCTCCCAGTAAGAGTAAGACGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCGGTGGCCTCCTCTCATTACTCCTCCCAGTAAGAGTAAGACGAA  730

seq1  ACCTTCATCTGAAACTTTCCTCTGATAAGGACAACTATACTGTGAGACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATCTGAAACTTTCCTCTGATAAGGACAACTATACTGTGAGACCT  780

seq1  GTTAAACAAGCTAGGTTTTGGTCATTAAGACACTGAGTCAAGAAAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACAAGCTAGGTTTTGGTCATTAAGACACTGAGTCAAGAAAAAAAA  830

seq1  AGCCACAGTTAAAAGGAAGATTAATTCATTGTGGTCACATTGGAAGATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGTTAAAAGGAAGATTAATTCATTGTGGTCACATTGGAAGATGA  880

seq1  ACAAGTGAAGAGTTCTGGCCCCTGCTAAGTCTGCCTGAGCGCTACCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGAAGAGTTCTGGCCCCTGCTAAGTCTGCCTGAGCGCTACCCTCT  930

seq1  CCTACAGGGTGGTCTTAAGATGGAAAAAAAATACCCCAAACCAAAAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGGGTGGTCTTAAGATGGAAAAAAAATACCCCAAACCAAAAAAAA  980

seq1  AAAAAAAAAAAAAAAAACTAGAAAAAATTATGGGGACTTGCAAAGGCAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAACTAGAAAAAATTATGGGGACTTGCAAAGGCAGA  1030

seq1  GTAGTCCCGAGTCCCTTACTTCATAGTTTAATTGAAACCTCTTGCAAGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCCGAGTCCCTTACTTCATAGTTTAATTGAAACCTCTTGCAAGCT  1080

seq1  GTGAATGGAGAATTC  1115
      |||||||||||||||
seq2  GTGAATGGAGAATTC  1095