BAC Information

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BAC

Clone NameB6Ng01-061H15
Chromosome11 (Build37)
Map Location 47,128,487 - 47,302,028
singlet/doubletdoublet
Overlap geneSgcd
Upstream geneLOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
Downstream geneLOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061H15.bB6Ng01-061H15.g
ACCDH882144DH882145
length2441,032
definitionDH882144|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H15, 5' end.DH882145|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,301,785 - 47,302,028)(47,128,487 - 47,129,530)
sequence
gaattcatacatgttggggatgtcagattgtcaaagttgaaagagtgttt
ctgcttctcattttgttttgtttatgggtggggggagctgcaaagccctg
cttttataagtgtgtgtttctggagttatattgtcacattttagttgctc
ttcaagttttaggtttatactgaaactaactgaatacccaatgtttattc
cattttgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctttgtttggtgttttgtttttgtttgtttgtatttcttttgttg
ttgctgctgttgttatttttcccatttcacttcactgccaattaagtctt
gatccctggctatacgatgatctcttctttttatggctgaattcaaccta
cccccaagtatatggatatatttgaaagaaaaaaaaaactttggtgcaat
gagtattatagcgagatattcctgcctgccatgcccagggcaccatcacc
tgttcagagatctgtatctgtgtcccaatccttcctagtacattgcataa
caactttaggtttgctgtctcagactggtgatcagaacatatggtttgct
tcctgggcctggttctacctctaagcatcaatgtgtgggataatgaagtt
ttacataatcatggtacagctctctgtatagtctaatattagaaaaaaaa
gcgatcttagaaagtataattcttagaattgattacaatatacatttctt
gtctcatctaatactactgaacatacaagagtgagaaactgaactttgag
acagattgtgaacttttcaaagagtgtgcttatgatcagaggtttcttag
catctatctctatagatcaaaccttggatgttacagttccttggcattta
acttttttccttatttatttaggcagctatttaacatttggttatgactc
tatcctctggctttgtgtctagcacataagaagaactctagaaaacagag
aagtttcttaaagattttctattctagtaagatggatgcaagcatccaga
agctacagcacaacacaaggaaggttctaacagaaaaacatacacagcta
aatatatacacacacaggagggacagcagacataaacataagaggtcaag
gaggctgactgatagaagagattttttcttttttcttttttttttaatta
ggtatttatttcagctcatttccaatgctatcccaaaagtctctacacgc
ttccaccactccccaccctccaatccacttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47301785_47302028
seq2: B6Ng01-061H15.b_43_286 (reverse)

seq1  CACACACACACACACACACACACACACACACACACTTCAAAATGGAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACTTCAAAATGGAATAA  50

seq1  ACATTGGGTATTCAGTTAGTTTCAGTATAAACCTAAAACTTGAAGAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGGTATTCAGTTAGTTTCAGTATAAACCTAAAACTTGAAGAGCAA  100

seq1  CTAAAATGTGACAATATAACTCCAGAAACACACACTTATAAAAGCAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGTGACAATATAACTCCAGAAACACACACTTATAAAAGCAGGGC  150

seq1  TTTGCAGCTCCCCCCACCCATAAACAAAACAAAATGAGAAGCAGAAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCTCCCCCCACCCATAAACAAAACAAAATGAGAAGCAGAAACAC  200

seq1  TCTTTCAACTTTGACAATCTGACATCCCCAACATGTATGAATTC  244
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAACTTTGACAATCTGACATCCCCAACATGTATGAATTC  244

seq1: chr11_47128487_47129530
seq2: B6Ng01-061H15.g_70_1101

seq1  GAATTCTTTGTTTGGTGTTTTGTTTTTGTTTGTTTGTATTTCTTTTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTGGTGTTTTGTTTTTGTTTGTTTGTATTTCTTTTGTTG  50

seq1  TTGCTGCTGTTGTTATTTTTCCCATTTCACTTCACTGCCAATTAAGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTGTTGTTATTTTTCCCATTTCACTTCACTGCCAATTAAGTCTT  100

seq1  GATCCCTGGCTATACGATGATCTCTTCTTTTTATGGCTGAATTCAACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTGGCTATACGATGATCTCTTCTTTTTATGGCTGAATTCAACCTA  150

seq1  CCCCCAAGTATATGGATATATTTGAAAGAAAAAAAAAACTTTGGTGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGTATATGGATATATTTGAAAGAAAAAAAAAACTTTGGTGCAAT  200

seq1  GAGTATTATAGCGAGATATTCCTGCCTGCCATGCCCAGGGCACCATCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTATAGCGAGATATTCCTGCCTGCCATGCCCAGGGCACCATCACC  250

seq1  TGTTCAGAGATCTGTATCTGTGTCCCAATCCTTCCTAGTACATTGCATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAGATCTGTATCTGTGTCCCAATCCTTCCTAGTACATTGCATAA  300

seq1  CAACTTTAGGTTTGCTGTCTCAGACTGGTGATCAGAACATATGGTTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTAGGTTTGCTGTCTCAGACTGGTGATCAGAACATATGGTTTGCT  350

seq1  TCCTGGGCCTGGTTCTACCTCTAAGCATCAATGTGTGGGATAATGAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCCTGGTTCTACCTCTAAGCATCAATGTGTGGGATAATGAAGTT  400

seq1  TTACATAATCATGGTACAGCTCTCTGTATAGTCTAATATTAGAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAATCATGGTACAGCTCTCTGTATAGTCTAATATTAGAAAAAAAA  450

seq1  GCGATCTTAGAAAGTATAATTCTTAGAATTGATTACAATATACATTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATCTTAGAAAGTATAATTCTTAGAATTGATTACAATATACATTTCTT  500

seq1  GTCTCATCTAATACTACTGAACATACAAGAGTGAGAAACTGAACTTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCTAATACTACTGAACATACAAGAGTGAGAAACTGAACTTTGAG  550

seq1  ACAGATTGTGAACTTTTCAAAGAGTGTGCTTATGATCAGAGGTTTCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGTGAACTTTTCAAAGAGTGTGCTTATGATCAGAGGTTTCTTAG  600

seq1  CATCTATCTCTATAGATCAAACCTTGGATGTTACAGTTCCTTGGCATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATCTCTATAGATCAAACCTTGGATGTTACAGTTCCTTGGCATTTA  650

seq1  ACTTTTTTCCTTATTTATTTAGGCAGCTATTTAACATTTGGTTATGACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTCCTTATTTATTTAGGCAGCTATTTAACATTTGGTTATGACTC  700

seq1  TATCCTCTGGCTTTGTGTCTAGCACATAAGAAGAACTCTAGAAAACAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTGGCTTTGTGTCTAGCACATAAGAAGAACTCTAGAAAACAGAG  750

seq1  AAGTTTCTTAAAGATTTTCTATTCTAGTAAGATGGATGCAAGCATCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTAAAGATTTTCTATTCTAGTAAGATGGATGCAAGCATCCAGA  800

seq1  AGCTACAGCACAACACAAGGAAGGTTCTAACAGAAAAACATACACAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGCACAACACAAGGAAGGTTCTAACAGAAAAACATACACAGCTA  850

seq1  AATATATACACACACAGGAGGGACAGCAGACATAAACATAAGAGGTCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACACACACAGGAGGGACAGCAGACATAAACATAAGAGGTCAAG  900

seq1  GAAGGCTGACTGATAGAAGAGATTTTTTTCTTTTTTCTTTTTTTTTTTAA  950
      | |||||||||||||||||||| ||||||||||||||||||||||||  |
seq2  G-AGGCTGACTGATAGAAGAGA-TTTTTTCTTTTTTCTTTTTTTTTT--A  946

seq1  ATTAGGTATTTATTTCAGCTACATTTCCAATGCTATCCCAAAAGTCCCCT  1000
      |||||||||||||||||||| |||||||||||||||||||||||| | ||
seq2  ATTAGGTATTTATTTCAGCT-CATTTCCAATGCTATCCCAAAAGT-CTCT  994

seq1  ACACGCTTCCCCACCCACTCCCCCACCCTCCCACTCCCACTTCT  1044
      ||||||||||    ||||| ||||||||||| |   ||||||||
seq2  ACACGCTTCC---ACCACT-CCCCACCCTCCAA--TCCACTTCT  1032