BAC Information

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BAC

Clone NameB6Ng01-062C24
Chromosome11 (Build37)
Map Location 38,200,521 - 38,357,925
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039148, LOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062C24.bB6Ng01-062C24.g
ACCDH882660DH882661
length1,2061,106
definitionDH882660|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C24, 5' end.DH882661|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,356,701 - 38,357,925)(38,200,521 - 38,201,633)
sequence
gaattctattaatttcatcctctgacttgtctctcttcatacttaacagc
atcctccagaaagctataaaaatctctagaggtccttgaagtaatgagaa
agttgatggttttccccccccctctctctaataattatactttgatttct
ctataaccatcttaagttttcatccaggttatcaccaaaactttttatgc
ttatgtctctcagtaagtaccctgccttggagtctacaggcccatcctcc
ttggatcaagcttcgcgcccccacccccaccccacccccgccgcccgtcc
gctccgttgtgacttgtccactaggtggagctgtaacaatttagctcaca
gatcacaaagagagagagataaaactcactaactattgcttagtcctctg
gggtaacttgttgctatggcccagaatggcaaaccaatgcagaatagggg
aagaggacaagaaatcccatgacaggaatactcttggggtaaatatattc
cgtaggacatgtgcttactgattccacaagtgagtctctgctgtgctggg
ccttctaaaaacttgtttgtctagttcctgttcattttatgcggaataga
ttttaaaaaaagaagaaagaaagaaagaaaagaaaaaagaaaactaaact
ttgaccagaatctggaagcacctgtcctgggcccagctgtgacagtccct
aggtgctttttatcattaatttgtggataacttccaagaagaatcagaat
ttcattatagagtagaaatcaaactgccatagctctgcttatgacatagt
tcttctgagatacaaatgaatctatgcttgtgtgttgctttgtctgaaca
gcagtggaagagtaagatgtgaaaggttttcctcacttatattccatttg
gaaaagtaaaatcgagtaagaatttcattagagatgtgaaatgttcattt
attttaagttgaaaaacagatattagcccgctagaaaataacctattact
tgctctctctcaataagttgcctactacattaatcttcgtaaatgcatcc
ttaacctctatttacataggatattacatttgaataacctttaaatgtgg
gtgttaataccagcggatggggattcctccgctaagatttttctcactaa
gagttggtgaatcgattccctgtttcatgagttcttcttgagcgatttat
gctaaa
gaattcagataaaaatgggtagaaatgtacgatttcctcaggacaaacag
attttacctacagcagaaagactgcataatacatcttggactttgaaata
gagtttgcttacgtaatcactacttttgtaaagtatatatgtatatcatc
atgtgtcatgatggatttgtaggagacattatgagtgtagtaaaccttcc
ttatctgcaacattgcttttcactaccccagttactccagatcactgaca
gttaagtaatataaaatggatattacagaaagactaaatactttccatac
tctttggtaaaatgctgttgttcttgtgattttttatgtcaatttgatac
aagctgaagatgccatctgagaggcaagaacttcaagtgttaaaaagtgt
ccagaagaacttgctatatatataagactctagggaatttttaaattagt
gattgatagggaaggactcagaccattgtgaatggtagcacttctaggat
acctgctctgggttctataagaaagcaacctgaggaagcaatgaggagca
agccagtaaacagcatccctctgtgccctttgtatcacctcttgcctaca
gattactgcctggtctgaggttcagctttagcttccctcagaggattgtg
actgaggatatgtaagctaaaaatcctccttcctccccaagttgcctttg
atcacagtgtttcattatagcagtagaaacaataagacaagtactcaagt
ctcctgttgcctaacctcacactattttatcctgcaggaatataatgtga
ggcactcttttgtcttgattatccaagcagtatatactacctacctcata
ttcttctccattactatactgactaatacacttttgcaccaaggatgttt
aaattccttttgtttttacatttttattcatcaatggccccaaattgcag
gagtaacagtgctaacaactcaacatgtgtattcatgactttttgaaagt
tttataatacatcatatatatgtgtgaaagtcattgagtctatatgcgcc
tactgaaaatttctttaaagagttagaaagggatgcactaagctgcttgg
gtggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38356701_38357925
seq2: B6Ng01-062C24.b_46_1251 (reverse)

seq1  TTTAGCATGAAAAACTGGCTCAAGAAGGAGCTCATGGAAACAGGGAATAT  50
      ||||||||    || | ||||||||| || ||||| ||||||||||  ||
seq2  TTTAGCAT----AAATCGCTCAAGAA-GAACTCAT-GAAACAGGGA--AT  42

seq1  GGAATCACCAACTTTTTAGTGAGAAAATATCTATGCTGAGG-ATCTCCAT  99
       || |||||||| | |||||||||||| ||||  || |||| ||| ||||
seq2  CGATTCACCAAC-TCTTAGTGAGAAAA-ATCTTAGCGGAGGAATCCCCAT  90

seq1  CCGCTGGTATTATACACCACAATCTAAAGGTTATTCAAATGTAATATCCT  149
      |||||||||||| |||||   || ||||||||||||||||||||||||||
seq2  CCGCTGGTATTA-ACACCCACATTTAAAGGTTATTCAAATGTAATATCCT  139

seq1  ATGTAAATAGAGGTTAAGGATGCATTTAACGAAGATTAAATGTAGTAGGC  199
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  ATGTAAATAGAGGTTAAGGATGCATTT-ACGAAGATT-AATGTAGTAGGC  187

seq1  AAACTTATTGAGAGAGGAGCAAGTAATAGGTTAATTTTTTCTTAGCGGGC  249
       |||||||||||||| |||||||||||||||||   ||||| ||||||||
seq2  -AACTTATTGAGAGA-GAGCAAGTAATAGGTTA---TTTTC-TAGCGGGC  231

seq1  TAATATTCTGTTTCTCAACTTAAAATAAATGAACATTTCACATCTCTAAT  299
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAATA-TCTGTTTTTCAACTTAAAATAAATGAACATTTCACATCTCTAAT  280

seq1  GAAATTCTTACTCGATTTTACTTTTCCAAATGGAATATAAGTGAGGAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTTACTCGATTTTACTTTTCCAAATGGAATATAAGTGAGGAAAA  330

seq1  CCTTTCACATCTTACTCTTCCACTGCTGTTCAGACAAAGCAACACACAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACATCTTACTCTTCCACTGCTGTTCAGACAAAGCAACACACAAG  380

seq1  CATAGATTCATTTGTATCTCAGAAGAACTATGTCATAAGCAGAGCTATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTCATTTGTATCTCAGAAGAACTATGTCATAAGCAGAGCTATGG  430

seq1  CAGTTTGATTTCTACTCTATAATGAAATTCTGATTCTTCTTGGAAGTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGATTTCTACTCTATAATGAAATTCTGATTCTTCTTGGAAGTTAT  480

seq1  CCACAAATTAATGATAAAAAGCACCTAGGGACTGTCACAGCTGGGCCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATTAATGATAAAAAGCACCTAGGGACTGTCACAGCTGGGCCCAG  530

seq1  GACAGGTGCTTCCAGATTCTGGTCAAAGTTTAGTTTTCTTTTTTCTTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGCTTCCAGATTCTGGTCAAAGTTTAGTTTTCTTTTTTCTTTTC  580

seq1  TTTCTTTCTTTCTTCTTTTTTTAAAATCTATTCCGCATAAAATGAACAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTCTTTTTTTAAAATCTATTCCGCATAAAATGAACAGG  630

seq1  AACTAGACAAACAAGTTTTTAGAAGGCCCAGCACAGCAGAGACTCACTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGACAAACAAGTTTTTAGAAGGCCCAGCACAGCAGAGACTCACTTG  680

seq1  TGGAATCAGTAAGCACATGTCCTACGGAATATATTTACCCCAAGAGTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCAGTAAGCACATGTCCTACGGAATATATTTACCCCAAGAGTATT  730

seq1  CCTGTCATGGGATTTCTTGTCCTCTTCCCCTATTCTGCATTGGTTTGCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATGGGATTTCTTGTCCTCTTCCCCTATTCTGCATTGGTTTGCCA  780

seq1  TTCTGGGCCATAGCAACAAGTTACCCCAGAGGACTAAGCAATAGTTAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCCATAGCAACAAGTTACCCCAGAGGACTAAGCAATAGTTAGTG  830

seq1  AGTTTTATCTCTCTCTCTTTGTGATCTGTGAGCTAAATTGTTACAGCTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATCTCTCTCTCTTTGTGATCTGTGAGCTAAATTGTTACAGCTCC  880

seq1  ACCTAGTGGACAAGTCACAACGGAGCGGACGGGCGGCGGGGGTGGGGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTGGACAAGTCACAACGGAGCGGACGGGCGGCGGGGGTGGGGTGG  930

seq1  GGGTGGGGGCGCGAAGCTTGATCCAAGGAGGATGGGCCTGTAGACTCCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGCGCGAAGCTTGATCCAAGGAGGATGGGCCTGTAGACTCCAA  980

seq1  GGCAGGGTACTTACTGAGAGACATAAGCATAAAAAGTTTTGGTGATAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTACTTACTGAGAGACATAAGCATAAAAAGTTTTGGTGATAACC  1030

seq1  TGGATGAAAACTTAAGATGGTTATAGAGAAATCAAAGTATAATTATTAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAAACTTAAGATGGTTATAGAGAAATCAAAGTATAATTATTAGA  1080

seq1  GAGAGGGGGGGGGAAAACCATCAACTTTCTCATTACTTCAAGGACCTCTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGGGGGGAAAACCATCAACTTTCTCATTACTTCAAGGACCTCTA  1130

seq1  GAGATTTTTATAGCTTTCTGGAGGATGCTGTTAAGTATGAAGAGAGACAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTTATAGCTTTCTGGAGGATGCTGTTAAGTATGAAGAGAGACAA  1180

seq1  GTCAGAGGATGAAATTAATAGAATTC  1225
      ||||||||||||||||||||||||||
seq2  GTCAGAGGATGAAATTAATAGAATTC  1206

seq1: chr11_38200521_38201633
seq2: B6Ng01-062C24.g_66_1171

seq1  GAATTCAGATAAAAATGGGTAGAAATGTACGATTTCCTCAGGACAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATAAAAATGGGTAGAAATGTACGATTTCCTCAGGACAAACAG  50

seq1  ATTTTACCTACAGCAGAAAGACTGCATAATACATCTTGGACTTTGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCTACAGCAGAAAGACTGCATAATACATCTTGGACTTTGAAATA  100

seq1  GAGTTTGCTTACGTAATCACTACTTTTGTAAAGTATATATGTATATCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCTTACGTAATCACTACTTTTGTAAAGTATATATGTATATCATC  150

seq1  ATGTGTCATGATGGATTTGTAGGAGACATTATGAGTGTAGTAAACCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATGATGGATTTGTAGGAGACATTATGAGTGTAGTAAACCTTCC  200

seq1  TTATCTGCAACATTGCTTTTCACTACCCCAGTTACTCCAGATCACTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGCAACATTGCTTTTCACTACCCCAGTTACTCCAGATCACTGACA  250

seq1  GTTAAGTAATATAAAATGGATATTACAGAAAGACTAAATACTTTCCATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTAATATAAAATGGATATTACAGAAAGACTAAATACTTTCCATAC  300

seq1  TCTTTGGTAAAATGCTGTTGTTCTTGTGATTTTTTATGTCAATTTGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTAAAATGCTGTTGTTCTTGTGATTTTTTATGTCAATTTGATAC  350

seq1  AAGCTGAAGATGCCATCTGAGAGGCAAGAACTTCAAGTGTTAAAAAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAAGATGCCATCTGAGAGGCAAGAACTTCAAGTGTTAAAAAGTGT  400

seq1  CCAGAAGAACTTGCTATATATATAAGACTCTAGGGAATTTTTAAATTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAACTTGCTATATATATAAGACTCTAGGGAATTTTTAAATTAGT  450

seq1  GATTGATAGGGAAGGACTCAGACCATTGTGAATGGTAGCACTTCTAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATAGGGAAGGACTCAGACCATTGTGAATGGTAGCACTTCTAGGAT  500

seq1  ACCTGCTCTGGGTTCTATAAGAAAGCAACCTGAGGAAGCAATGAGGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTCTGGGTTCTATAAGAAAGCAACCTGAGGAAGCAATGAGGAGCA  550

seq1  AGCCAGTAAACAGCATCCCTCTGTGCCCTTTGTATCACCTCTTGCCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTAAACAGCATCCCTCTGTGCCCTTTGTATCACCTCTTGCCTACA  600

seq1  GATTACTGCCTGGTCTGAGGTTCAGCTTTAGCTTCCCTCAGAGGATTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTGCCTGGTCTGAGGTTCAGCTTTAGCTTCCCTCAGAGGATTGTG  650

seq1  ACTGAGGATATGTAAGCTAAAAATCCTCCTTCCTCCCCAAGTTGCCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGATATGTAAGCTAAAAATCCTCCTTCCTCCCCAAGTTGCCTTTG  700

seq1  ATCACAGTGTTTCATTATAGCAGTAGAAACAATAAGACAAGTACTCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGTGTTTCATTATAGCAGTAGAAACAATAAGACAAGTACTCAAGT  750

seq1  CTCCTGTTGCCTAACCTCACACTATTTTATCCTGCAGGAATATAATGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTGCCTAACCTCACACTATTTTATCCTGCAGGAATATAATGTGA  800

seq1  GGCACTCTTTTGTCTTGATTATCCAAGCAGTATATACTACCTACCTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCTTTTGTCTTGATTATCCAAGCAGTATATACTACCTACCTCATA  850

seq1  TTCTTCTCCATTACTATACTGACTAATACACTTTTGCACCAAGGATGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCCATTACTATACTGACTAATACACTTTTGCACCAAGGATGTTT  900

seq1  AAATTCCTTTTGTTTTTACATTTTTATTCATCAATGGCCCCAAATTGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTTTGTTTTTACATTTTTATTCATCAATGGCCCCAAATTGCAG  950

seq1  GAGTAACAGTGCTAACAACTCAAACATGTGTATTCATGACTCTTTGAAAG  1000
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  GAGTAACAGTGCTAACAACTC-AACATGTGTATTCATGACTTTTTGAAAG  999

seq1  TCTATAT-ATACAATCATTATATATGTGTGATAGTCATTGAGTCTATATG  1049
      | | ||| |||| |||| ||||||||||||| ||||||||||||||||||
seq2  T-TTTATAATAC-ATCA-TATATATGTGTGAAAGTCATTGAGTCTATATG  1046

seq1  CGCCTACATGAAAATTTCTTTAAAGAGTTTCAGAAAGGAATGGCACTAAG  1099
      ||||||| |||||||||||||||||||||  ||||||| || ||||||||
seq2  CGCCTAC-TGAAAATTTCTTTAAAGAGTT--AGAAAGGGAT-GCACTAAG  1092

seq1  CTGCTTGGGTGGTA  1113
      ||||||||||||||
seq2  CTGCTTGGGTGGTA  1106