BAC Information

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BAC

Clone NameB6Ng01-062H03
Chromosome11 (Build37)
Map Location 45,412,398 - 45,603,325
singlet/doubletdoublet
Overlap genenone
Upstream geneEbf1, LOC382510
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062H03.bB6Ng01-062H03.g
ACCDH882840DH882841
length273851
definitionDH882840|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H03, 5' end.DH882841|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,412,398 - 45,412,670)(45,602,476 - 45,603,325)
sequence
ttaataatgtttactaatgccttttcagccttgccaattttataatgctc
attccagactccaggtgtgacgtctgtggtccctgctgtgacacttgcta
gggaatttagacaccataaatcgaggttgtggagaggttttagccccatc
ttatgtccccagaaagaaatcacattcaccaagctttagaaaacaaattg
aagtgttggcatttttaatatatatttgatatattaatatatatattgtg
tgtatgtgtgtgtgtgtgtgaga
gaattcagttccgtattctggaattgaggcttgggttttgcactaatcat
gtctaagaaaaaagacttggacatcatactgcagatgagatatttgagtt
agtaaacctctggcagggtttagctgtagttgacatgaaagtgttttagt
cagcattttctacttaggaggtagggggagaaagctgaactccccaaagc
acaagctaaatggctcctgaaaggaggggggttttgttcagaatggcaca
ctattgaagatacacactggctagtgcttttcctgaaggctatggagcag
gtgatgtgattgacatgttgtggattttgaataggaaatattaaggcttc
aggttctgctccatcctttagtgggatgcatgtaaagtagtttgtaatag
agagttaagcctttcttcttacatcgttatgaggctcctgtgagctaagg
cagtagtcagcagagtgattcaacttttctcaagtgctccatagctgatg
ctgagaactaggctagaggtttggatgacgtaattagttaggcattcaga
aggtactagtgtccgttgaaacaaggtatgtcatttgggatctctaactc
ttcacacaattggattcttctagctacagatgagtaccaacaataagtcc
atagcagagattagctgtaattggtacctagttgtttgctttggggtaag
tgctgacccattcactctgaggccattaggttttgactctttttcttttt
ctttttctttttctttttcttttctttttctttttctttttctttttctt
ttctttttctttttctttgtcttttcccttcccttcccttcccttacctt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_45412398_45412670
seq2: B6Ng01-062H03.b_53_325

seq1  TTAATAATGTTTACTAATGCCTTTTCAGCCTTGCCAATTTTATAATGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATGTTTACTAATGCCTTTTCAGCCTTGCCAATTTTATAATGCTC  50

seq1  ATTCCAGACTCCAGGTGTGACGTCTGTGGTCCCTGCTGTGACACTTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGACTCCAGGTGTGACGTCTGTGGTCCCTGCTGTGACACTTGCTA  100

seq1  GGGAATTTAGACACCATAAATCGAGGTTGTGGAGAGGTTTTAGCCCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTTAGACACCATAAATCGAGGTTGTGGAGAGGTTTTAGCCCCATC  150

seq1  TTATGTCCCCAGAAAGAAATCACATTCACCAAGCTTTAGAAAACAAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCCCCAGAAAGAAATCACATTCACCAAGCTTTAGAAAACAAATTG  200

seq1  AAGTGTTGGCATTTTTAATATATATTTGATATATTAATATATATATTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGGCATTTTTAATATATATTTGATATATTAATATATATATTGTG  250

seq1  TGTATGTGTGTGTGTGTGTGAGA  273
      |||||||||||||||||||||||
seq2  TGTATGTGTGTGTGTGTGTGAGA  273

seq1: chr11_45602476_45603325
seq2: B6Ng01-062H03.g_69_918 (reverse)

seq1  AAGGGAAGGGAAGGGAAGGGAAGGG--AAGGAAAAGACAAAAGAAAAAGA  48
      |||| ||||||||||||||||||||  |||  ||||| ||||||||||| 
seq2  AAGGTAAGGGAAGGGAAGGGAAGGGAAAAGACAAAGA-AAAAGAAAAAG-  48

seq1  AAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAA  98
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAGAAAAAGAAAAAGAAAAAGAAAAAG-AAAAGAAAAAGAAAAAGAAA  97

seq1  AAGAAAAAGAAAAAGAGTCAAAACCTAATGGCCTCAGAGTGAATGGGTCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGAAAAAGAGTCAAAACCTAATGGCCTCAGAGTGAATGGGTCA  147

seq1  GCACTTACCCCAAAGC-AACAACTAGGTACCAATTACAGCTAATCTCTGC  197
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCACTTACCCCAAAGCAAACAACTAGGTACCAATTACAGCTAATCTCTGC  197

seq1  TATGGACTTATTGTTGGTACTCATCTGTAGCTAGAAGAATCCAATTGTGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACTTATTGTTGGTACTCATCTGTAGCTAGAAGAATCCAATTGTGT  247

seq1  GAAGAGTTAGAGATCCCAAATGACATACCTTGTTTCAACGGACACTAGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTAGAGATCCCAAATGACATACCTTGTTTCAACGGACACTAGTA  297

seq1  CCTTCTGAATGCCTAACTAATTACGTCATCCAAACCTCTAGCCTAGTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAATGCCTAACTAATTACGTCATCCAAACCTCTAGCCTAGTTCT  347

seq1  CAGCATCAGCTATGGAGCACTTGAGAAAAGTTGAATCACTCTGCTGACTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAGCTATGGAGCACTTGAGAAAAGTTGAATCACTCTGCTGACTA  397

seq1  CTGCCTTAGCTCACAGGAGCCTCATAACGATGTAAGAAGAAAGGCTTAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTAGCTCACAGGAGCCTCATAACGATGTAAGAAGAAAGGCTTAAC  447

seq1  TCTCTATTACAAACTACTTTACATGCATCCCACTAAAGGATGGAGCAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTACAAACTACTTTACATGCATCCCACTAAAGGATGGAGCAGAA  497

seq1  CCTGAAGCCTTAATATTTCCTATTCAAAATCCACAACATGTCAATCACAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCCTTAATATTTCCTATTCAAAATCCACAACATGTCAATCACAT  547

seq1  CACCTGCTCCATAGCCTTCAGGAAAAGCACTAGCCAGTGTGTATCTTCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTCCATAGCCTTCAGGAAAAGCACTAGCCAGTGTGTATCTTCAA  597

seq1  TAGTGTGCCATTCTGAACAAAACCCCCCTCCTTTCAGGAGCCATTTAGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGCCATTCTGAACAAAACCCCCCTCCTTTCAGGAGCCATTTAGCT  647

seq1  TGTGCTTTGGGGAGTTCAGCTTTCTCCCCCTACCTCCTAAGTAGAAAATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTGGGGAGTTCAGCTTTCTCCCCCTACCTCCTAAGTAGAAAATG  697

seq1  CTGACTAAAACACTTTCATGTCAACTACAGCTAAACCCTGCCAGAGGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAAAACACTTTCATGTCAACTACAGCTAAACCCTGCCAGAGGTTT  747

seq1  ACTAACTCAAATATCTCATCTGCAGTATGATGTCCAAGTCTTTTTTCTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTCAAATATCTCATCTGCAGTATGATGTCCAAGTCTTTTTTCTTA  797

seq1  GACATGATTAGTGCAAAACCCAAGCCTCAATTCCAGAATACGGAACTGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGATTAGTGCAAAACCCAAGCCTCAATTCCAGAATACGGAACTGAA  847

seq1  TTC  850
      |||
seq2  TTC  850