BAC Information

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BAC

Clone NameB6Ng01-062O06
Chromosome11 (Build37)
Map Location 13,453,184 - 13,609,252
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062O06.bB6Ng01-062O06.g
ACCDH883147DH883148
length1,1281,004
definitionDH883147|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O06, 5' end.DH883148|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,453,184 - 13,454,321)(13,608,706 - 13,609,252)
sequence
gaattcagtttaaatatccccagtgttgaacatcatccctttagtgtgta
tctcttccttatggcacatttataagcattctcaaattttattcctcaag
accagctactagagaaatgggggaatgacttagtaaatattttgaatgtc
tcattatctgtgaattatcaagtctttcattagagctgtgttttattaca
ctttacattggcatgtcagattactgagaaaatgaactcaaacgagggaa
acattattggcttatgacttgaggtcgtttagtccatgtttctcaggatg
cacatcatggcagaaatatgtggcagagggggagttcactttattacacc
caggaggaaattgagagaatggggcgcatgcttctaatgctccttcaagg
acctgtcatttgtggcttaaatttgtttgtttaggcttccaccacagaaa
gaatccaattgtgcctgtcatctcgatgctaggcctacactgtcgtgagg
tgcagagaatatttaagatgtagagaatacaagctgtctttggatttcag
aatgtgaggactgaaaggactttctggatagagctatgaatcatgcgttg
tgcctggtgtgtgatgtaaaggtatgaatgtagatgtatatggatagatt
aagggagttcattattaacagttctcatattagcatattatctatatttc
aaaatagttcctgattttgaagagttacttgtggcttgaatgctattttc
catagaagataaatgagaatgccaccctttcttatatgtaattataaaca
tgtcttttcaaagttaaacgattcttagaaagaaaggggtatggggaaca
tgaacagaatattaatggagataccaaccaagcctaggtgctgctgcccc
cattaaggcatttctcagattacatggagctgggtgacagggaaggaccc
ctttattggagttatcatcagagcatcatgatacgtaccgagttttgggt
tctaaaatctagaacgtccatctcatgtgctttgttatagtacctaagga
acttttgagcgttggggaaatttctgagaataaagtagtggggctaattc
atgggaatggatgctggttgtttggttt
gaattcaagttaatgcatacggtcatggagattgacacactattgataga
taaacatgttttccaagaaatcaggtagggaatttaaaaacttatatgat
ccaatgaaaaaataacaagaaactatggtatacaataaaacagtcctaag
atggaaaattaaggttaaggtttaaatggagtcatttctgaattccatca
gatacttaaagaattaatatcactgcttctaaaccttgtccactaactac
caagggaagaggtaccatttagtgcatttgttatacaaagtcattattat
tcctaatgtgaaattacttaagaatactcaatgagaatattataggtcaa
tgtccttgacaaccaggagttgtcaataaaatacttgaaaacccaattca
acaacacatcaaaaaatcatccactatgatcatgctgacttcatattata
gatgccaggactgttcaatatatgcttgtcaataaatacaatccatcata
tgtgtagagtcaaggacagaaatcacacgatcagctcaacagaagcagaa
aagcatactttacaaaagtttaacactacttcatgttaaaattctcaaag
aaatagagatttgaaaaatatactaaggagttttcgtagttaatctatag
ccaacattttaataaataaagaaaatgaaaactaaaatcaggtagaaaca
aatgcatcccattttccataaatatataaataaaagtttcataaaattaa
aaggggggttgcacagcactggaaccacatttaatattctttgatatgtt
aggtgcaacattaaaaaaaggagaacaaatgaatacacataagaaaggaa
gaatttaatttatctctattttcaggtatgataataagaggacctagaaa
gtccactaaagcttttaaggcttatataaatttagcaagatgtaggatag
tacaccattcagagcagtactatctatttgtcagaattaaaataaaaaaa
tcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13453184_13454321
seq2: B6Ng01-062O06.b_40_1167

seq1  GAATTCAGTTTAAATATCCCCAGTGTTGAACATCATCCCTTTAGTGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTAAATATCCCCAGTGTTGAACATCATCCCTTTAGTGTGTA  50

seq1  TCTCTTCCTTATGGCACATTTATAAGCATTCTCAAATTTTATTCCTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTTATGGCACATTTATAAGCATTCTCAAATTTTATTCCTCAAG  100

seq1  ACCAGCTACTAGAGAAATGGGGGAATGACTTAGTAAATATTTTGAATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTACTAGAGAAATGGGGGAATGACTTAGTAAATATTTTGAATGTC  150

seq1  TCATTATCTGTGAATTATCAAGTCTTTCATTAGAGCTGTGTTTTATTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCTGTGAATTATCAAGTCTTTCATTAGAGCTGTGTTTTATTACA  200

seq1  CTTTACATTGGCATGTCAGATTACTGAGAAAATGAACTCAAACGAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATTGGCATGTCAGATTACTGAGAAAATGAACTCAAACGAGGGAA  250

seq1  ACATTATTGGCTTATGACTTGAGGTCGTTTAGTCCATGTTTCTCAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTGGCTTATGACTTGAGGTCGTTTAGTCCATGTTTCTCAGGATG  300

seq1  CACATCATGGCAGAAATATGTGGCAGAGGGGGAGTTCACTTTATTACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATGGCAGAAATATGTGGCAGAGGGGGAGTTCACTTTATTACACC  350

seq1  CAGGAGGAAATTGAGAGAATGGGGCGCATGCTTCTAATGCTCCTTCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAAATTGAGAGAATGGGGCGCATGCTTCTAATGCTCCTTCAAGG  400

seq1  ACCTGTCATTTGTGGCTTAAATTTGTTTGTTTAGGCTTCCACCACAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCATTTGTGGCTTAAATTTGTTTGTTTAGGCTTCCACCACAGAAA  450

seq1  GAATCCAATTGTGCCTGTCATCTCGATGCTAGGCCTACACTGTCGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAATTGTGCCTGTCATCTCGATGCTAGGCCTACACTGTCGTGAGG  500

seq1  TGCAGAGAATATTTAAGATGTAGAGAATACAAGCTGTCTTTGGATTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAATATTTAAGATGTAGAGAATACAAGCTGTCTTTGGATTTCAG  550

seq1  AATGTGAGGACTGAAAGGACTTTCTGGATAGAGCTATGAATCATGCGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGGACTGAAAGGACTTTCTGGATAGAGCTATGAATCATGCGTTG  600

seq1  TGCCTGGTGTGTGATGTAAAGGTATGAATGTAGATGTATATGGATAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTGTGTGATGTAAAGGTATGAATGTAGATGTATATGGATAGATT  650

seq1  AAGGGAGTTCATTATTAACAGTTCTCATATTAGCATATTATCTATATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGTTCATTATTAACAGTTCTCATATTAGCATATTATCTATATTTC  700

seq1  AAAATAGTTCCTGATTTTGAAGAGTTACTTGTGGCTTGAATGCTATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTCCTGATTTTGAAGAGTTACTTGTGGCTTGAATGCTATTTTC  750

seq1  CATAGAAGATAAATGAGAATGCCACCCTTTCTTATATGTAATTATAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGATAAATGAGAATGCCACCCTTTCTTATATGTAATTATAAACA  800

seq1  TGTCTTTTCAAAGTTAAAACGATTCTTAGAAAGAAAGGGGTATGGGGAAC  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTCAAAGTT-AAACGATTCTTAGAAAGAAAGGGGTATGGGGAAC  849

seq1  ATGAACAGAATATTAATGGAGATACCAACCAAGCCTAGGTGCTGCTGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGAATATTAATGGAGATACCAACCAAGCCTAGGTGCTGCTGCCC  899

seq1  CCATTAAGGCATTTCCCAGATTACATGGAGCTGGGGTGACAGGGAAGGAC  950
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  CCATTAAGGCATTTCTCAGATTACATGGAGCT-GGGTGACAGGGAAGGAC  948

seq1  CCATTTATTGAAGTTATCATCAAGAGCATCATGATACGTACCGAGTTTTG  1000
      || ||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  CCCTTTATTGGAGTTATCATC-AGAGCATCATGATACGTACCGAGTTTTG  997

seq1  GGTTCTAAAATCTAGAACGTCCATCTCATGGTGCTTTGTTATAGTACCCT  1050
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  GGTTCTAAAATCTAGAACGTCCATCTCAT-GTGCTTTGTTATAGTA-CCT  1045

seq1  AGGAAACTTTTGAAGCGTTTGGGAAATTTTCTGAGAATATAAGTTAGTGG  1100
      | | |||||||| |||||| |||||| |||||||||||| ||| ||||||
seq2  AAGGAACTTTTG-AGCGTTGGGGAAA-TTTCTGAGAATA-AAG-TAGTGG  1091

seq1  GGTCATAATTCCATGGGATTTGAT--TGCTTGTTTGGTTT  1138
      ||   ||||| ||||||| | |||  || |||||||||||
seq2  GG--CTAATT-CATGGGAATGGATGCTGGTTGTTTGGTTT  1128

seq1: chr11_13608706_13609252
seq2: B6Ng01-062O06.g_69_615 (reverse)

seq1  TGCTTCTGTTGAGCTGATCGTGTGATTTCTGTCCTTGACTCTACACATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTTGAGCTGATCGTGTGATTTCTGTCCTTGACTCTACACATAT  50

seq1  GATGGATTGTATTTATTGACAAGCATATATTGAACAGTCCTGGCATCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATTGTATTTATTGACAAGCATATATTGAACAGTCCTGGCATCTAT  100

seq1  AATATGAAGTCAGCATGATCATAGTGGATGATTTTTTGATGTGTTGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGTCAGCATGATCATAGTGGATGATTTTTTGATGTGTTGTTGA  150

seq1  ATTGGGTTTTCAAGTATTTTATTGACAACTCCTGGTTGTCAAGGACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTTTTCAAGTATTTTATTGACAACTCCTGGTTGTCAAGGACATTG  200

seq1  ACCTATAATATTCTCATTGAGTATTCTTAAGTAATTTCACATTAGGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAATATTCTCATTGAGTATTCTTAAGTAATTTCACATTAGGAATA  250

seq1  ATAATGACTTTGTATAACAAATGCACTAAATGGTACCTCTTCCCTTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGACTTTGTATAACAAATGCACTAAATGGTACCTCTTCCCTTGGTA  300

seq1  GTTAGTGGACAAGGTTTAGAAGCAGTGATATTAATTCTTTAAGTATCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGGACAAGGTTTAGAAGCAGTGATATTAATTCTTTAAGTATCTGA  350

seq1  TGGAATTCAGAAATGACTCCATTTAAACCTTAACCTTAATTTTCCATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCAGAAATGACTCCATTTAAACCTTAACCTTAATTTTCCATCTT  400

seq1  AGGACTGTTTTATTGTATACCATAGTTTCTTGTTATTTTTTCATTGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTTTTATTGTATACCATAGTTTCTTGTTATTTTTTCATTGGATC  450

seq1  ATATAAGTTTTTAAATTCCCTACCTGATTTCTTGGAAAACATGTTTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTTTTTAAATTCCCTACCTGATTTCTTGGAAAACATGTTTATCT  500

seq1  ATCAATAGTGTGTCAATCTCCATGACCGTATGCATTAACTTGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAGTGTGTCAATCTCCATGACCGTATGCATTAACTTGAATTC  547