BAC Information

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BAC

Clone NameB6Ng01-062O07
Chromosome11 (Build37)
Map Location 111,586,234 - 111,709,926
singlet/doubletdoublet
Overlap geneLOC629967
Upstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966
Downstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062O07.bB6Ng01-062O07.g
ACCDH883149DH883150
length1,1131,072
definitionDH883149|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O07, 5' end.DH883150|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,708,805 - 111,709,926)(111,586,234 - 111,587,309)
sequence
gaattctgtgggaaggtagtagcagggagtagcaaggctgattaagccat
cgtttatattgatttagtagccagcggtttgaactgatgctttatcaact
ccaaaattcaaaccctggctggaacccgagttatccatcaagaaggatta
cagacggaaaatgatccataaatttaacagactgattcttgttatctcca
gagatttctctgccacttaaaaatgatgtctagagaacaatttgcatcta
aaatggccttggaaagaggcaaaaggccagcgcttcaaattaatgaatcg
tcgggttacagaggaatgctcctagcaaaatgaagcaaaacacattgcgc
caaattccaatccaatcaataacaacctagtggattgctgcttctttacc
ctttttaaagtgttcctactcaaatttaagtctcagtaagggtagtgtat
tgagaacaaaaggttctgttaacatggaagaagcacgggttctaatgcaa
gctgagctatcactttctgcagtgatagtggcctccctggactcctcctt
catcagttgtgagaattaaaaccaaggacctttctgaactgttactagaa
aatattgcaacttgtgattttataagaaaaaaaatctaaaagctagcagt
attttttctaatgaatttccccgttcgttctttttcttctagtataaaag
aaaggagatttcatattttaatttctttgaaaattcattttttaactttt
ttaacagttatatgtgtggggctgggggtgtattgtgaaagcagctagta
tttacaagagaaggttctctccatctaccatgtgggtcctagatatctat
cttaggtcatcaggcctcatgataagtgccattatctgcagagctatttt
actagtcctacacatctgctttaataagatttgtatgtgcatctccatga
caaaatatccacaggctatgtcatatgatatgcatcctgtccatcacttc
cagtgagttgtgtgcatgtgtgtgtttacatactatgtatgattatgtgt
gggttcccttctatgttcctctatttatactttaaatccgagttgaagcc
acctgggtctaca
gaattctctgatggacttggagactggacttctggctgaaggctttccca
cacgtgtcgcatttgtagggcttctcccctgtgtgaaccctctggtgggc
atggaggtttgaggtcttgctgaactgcttctggcaaacattgcatttga
atggtttttcaccggtgtggacactgtgatgggcctgcagactggaggca
tgactgaagcctttcccacactcctcacatttatacggttctttcctgtg
tgcacactctggtgactatgaaggctcaagctccaggggaagcgcttccc
acacacttcacatctatacggtttttccccagtgtgaattctttggtgat
ctagaaaatgtgagctccgactgaagttcttcccacagacattgcagtga
aatggcttctctccggtatggaccctctggtggttttggaagcttgaggc
tgaactgaaacccttcccacactcttcacacttatatggcgtctctcctg
tgtggacccgctgatggatgtctaggttgccacttaagctgaagcgcttc
ccacactcattacactcataaggtttctcctcagtgtggactctctggtg
ggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacact
tatatggcttctctcctgtgtgaattctctcgtgggcctggaggtgtgcc
cactgttgtgtccatttttgttgttttatatgtatgaattcaaggttgac
cactcctcattgaataaccaataagaaggctcatcattagagaggctaat
ttcttctttctaccagtagttattacctattgttctttgtctgggttatg
ctttacattaatgctctgtgaatatttcctcaaactaaggcctattttct
agtcttttaatgagaacgtcatcattagtgagttcatccactgttacatt
aaccaccatcctaccaaagtacaattacttcagaataatgtcaaagctga
agacagaatataatattaccaatttttgaggctgtgtaggggatctttcc
tatccaactcgatcactgcgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111708805_111709926
seq2: B6Ng01-062O07.b_47_1159 (reverse)

seq1  TGTAGACCAGGGTGGCCTCAAACTCAGATTAAAAGTATAAATAAGAGGAA  50
      ||||||||  |||||| || ||||| |||| ||||||||||| |||||||
seq2  TGTAGACCCAGGTGGCTTC-AACTCGGATTTAAAGTATAAAT-AGAGGAA  48

seq1  CATAGAAGGGGAACACACACATAATCATACATAGTATGTAGACACACACA  100
      ||||||| |||||| ||||||||||||||||||||||||| |||||||||
seq2  CATAGAA-GGGAACCCACACATAATCATACATAGTATGTAAACACACACA  97

seq1  TGCACACAACCTCACTGGAAGTGATGGACAGGATGCAATATCATATTGAC  150
      ||||||||| |||||||||||||||||||||||||| |||||||| ||||
seq2  TGCACACAA-CTCACTGGAAGTGATGGACAGGATGC-ATATCATA-TGAC  144

seq1  ATAGCCTGTGGATATTTTGTCATGGAGATGCACATACAAATCTTATTTAA  200
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  ATAGCCTGTGGATATTTTGTCATGGAGATGCACATACAAATCTTATT--A  192

seq1  AGGCAGATGTGTAGGACTAGTAAAATAGCTCTGCAGATAATGGCACTTAT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATGTGTAGGACTAGTAAAATAGCTCTGCAGATAATGGCACTTAT  242

seq1  CATGAGGCCTGATGACCTAAGATAGATATCTAGGACCCACATGGTAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGCCTGATGACCTAAGATAGATATCTAGGACCCACATGGTAGATG  292

seq1  GAGAGAACCTTCTCTTGTAAATACTAGCCTGCTTTCACAATACACCCCCA  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGAGAACCTTCTCTTGTAAATACTAG-CTGCTTTCACAATACACCCCCA  341

seq1  GCCCCACACATATAACTGTTAAAAAAGTTAAAAAATGAATTTTCAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACACATATAACTGTTAAAAAAGTTAAAAAATGAATTTTCAAAGAA  391

seq1  ATTAAAATATGAAATCTCCTTTCTTTTATACTAGAAGAAAAAGAACGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATATGAAATCTCCTTTCTTTTATACTAGAAGAAAAAGAACGAAC  441

seq1  GGGGAAATTCATTAGAAAAAATACTGCTAGCTTTTAGATTTTTTTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATTCATTAGAAAAAATACTGCTAGCTTTTAGATTTTTTTTCTTA  491

seq1  TAAAATCACAAGTTGCAATATTTTCTAGTAACAGTTCAGAAAGGTCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCACAAGTTGCAATATTTTCTAGTAACAGTTCAGAAAGGTCCTTG  541

seq1  GTTTTAATTCTCACAACTGATGAAGGAGGAGTCCAGGGAGGCCACTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATTCTCACAACTGATGAAGGAGGAGTCCAGGGAGGCCACTATCA  591

seq1  CTGCAGAAAGTGATAGCTCAGCTTGCATTAGAACCCGTGCTTCTTCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAAAGTGATAGCTCAGCTTGCATTAGAACCCGTGCTTCTTCCATG  641

seq1  TTAACAGAACCTTTTGTTCTCAATACACTACCCTTACTGAGACTTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAACCTTTTGTTCTCAATACACTACCCTTACTGAGACTTAAATT  691

seq1  TGAGTAGGAACACTTTAAAAAGGGTAAAGAAGCAGCAATCCACTAGGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGGAACACTTTAAAAAGGGTAAAGAAGCAGCAATCCACTAGGTTG  741

seq1  TTATTGATTGGATTGGAATTTGGCGCAATGTGTTTTGCTTCATTTTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATTGGATTGGAATTTGGCGCAATGTGTTTTGCTTCATTTTGCTA  791

seq1  GGAGCATTCCTCTGTAACCCGACGATTCATTAATTTGAAGCGCTGGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATTCCTCTGTAACCCGACGATTCATTAATTTGAAGCGCTGGCCTT  841

seq1  TTGCCTCTTTCCAAGGCCATTTTAGATGCAAATTGTTCTCTAGACATCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTTTCCAAGGCCATTTTAGATGCAAATTGTTCTCTAGACATCAT  891

seq1  TTTTAAGTGGCAGAGAAATCTCTGGAGATAACAAGAATCAGTCTGTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTGGCAGAGAAATCTCTGGAGATAACAAGAATCAGTCTGTTAAA  941

seq1  TTTATGGATCATTTTCCGTCTGTAATCCTTCTTGATGGATAACTCGGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGATCATTTTCCGTCTGTAATCCTTCTTGATGGATAACTCGGGTT  991

seq1  CCAGCCAGGGTTTGAATTTTGGAGTTGATAAAGCATCAGTTCAAACCGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGGGTTTGAATTTTGGAGTTGATAAAGCATCAGTTCAAACCGCT  1041

seq1  GGCTACTAAATCAATATAAACGATGGCTTAATCAGCCTTGCTACTCCCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTAAATCAATATAAACGATGGCTTAATCAGCCTTGCTACTCCCTG  1091

seq1  CTACTACCTTCCCACAGAATTC  1122
      ||||||||||||||||||||||
seq2  CTACTACCTTCCCACAGAATTC  1113

seq1: chr11_111586234_111587309
seq2: B6Ng01-062O07.g_69_1137

seq1  GAATTCTCTGATGGACTTGGAGACTGGACTTCTGGCTGAAGGCTTTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGGACTTGGAGACTGGACTTCTGGCTGAAGGCTTTCCCA  50

seq1  CACGTGTCGCATTTGTAGGGCTTCTCCCCTGTGTGAACCCTCTGGTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTCGCATTTGTAGGGCTTCTCCCCTGTGTGAACCCTCTGGTGGGC  100

seq1  ATGGAGGTTTGAGGTCTTGCTGAACTGCTTCTGGCAAACATTGCATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTTTGAGGTCTTGCTGAACTGCTTCTGGCAAACATTGCATTTGA  150

seq1  ATGGTTTTTCACCGGTGTGGACACTGTGATGGGCCTGCAGACTGGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTCACCGGTGTGGACACTGTGATGGGCCTGCAGACTGGAGGCA  200

seq1  TGACTGAAGCCTTTCCCACACTCCTCACATTTATACGGTTCTTTCCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAGCCTTTCCCACACTCCTCACATTTATACGGTTCTTTCCTGTG  250

seq1  TGCACACTCTGGTGACTATGAAGGCTCAAGCTCCAGGGGAAGCGCTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTCTGGTGACTATGAAGGCTCAAGCTCCAGGGGAAGCGCTTCCC  300

seq1  ACACACTTCACATCTATACGGTTTTTCCCCAGTGTGAATTCTTTGGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTCACATCTATACGGTTTTTCCCCAGTGTGAATTCTTTGGTGAT  350

seq1  CTAGAAAATGTGAGCTCCGACTGAAGTTCTTCCCACAGACATTGCAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAATGTGAGCTCCGACTGAAGTTCTTCCCACAGACATTGCAGTGA  400

seq1  AATGGCTTCTCTCCGGTATGGACCCTCTGGTGGTTTTGGAAGCTTGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTCTCTCCGGTATGGACCCTCTGGTGGTTTTGGAAGCTTGAGGC  450

seq1  TGAACTGAAACCCTTCCCACACTCTTCACACTTATATGGCGTCTCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGAAACCCTTCCCACACTCTTCACACTTATATGGCGTCTCTCCTG  500

seq1  TGTGGACCCGCTGATGGATGTCTAGGTTGCCACTTAAGCTGAAGCGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCCGCTGATGGATGTCTAGGTTGCCACTTAAGCTGAAGCGCTTC  550

seq1  CCACACTCATTACACTCATAAGGTTTCTCCTCAGTGTGGACTCTCTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCATTACACTCATAAGGTTTCTCCTCAGTGTGGACTCTCTGGTG  600

seq1  GGTGTGGAGGTTCGAGCTGCAGCTGAAGCGCTTGCCACAGTCTCCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGAGGTTCGAGCTGCAGCTGAAGCGCTTGCCACAGTCTCCACACT  650

seq1  TATATGGCTTCTCTCCTGTGTGAATTCTCTCGTGGGCCTGGAGGTGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGCTTCTCTCCTGTGTGAATTCTCTCGTGGGCCTGGAGGTGTGCC  700

seq1  CACTGTTGTGTCCATTTTTGTTGTTTTATATGTATGAATTCAAGGTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGTGTCCATTTTTGTTGTTTTATATGTATGAATTCAAGGTTGAC  750

seq1  CACTCCTCATTGAATAACCAATAAGAAGGCTCATCATTAGAGAGGCTAA-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACTCCTCATTGAATAACCAATAAGAAGGCTCATCATTAGAGAGGCTAAT  800

seq1  TTCTTC-TTCTACCAGTAGTCATTACCTATTGTTCTTTGTCTGGGTTATG  848
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTTCTTTCTACCAGTAGTTATTACCTATTGTTCTTTGTCTGGGTTATG  850

seq1  CTTTACA-TCATGTCCTGTGAATTATTTCCTCAAACTAAGGCCTATTTTC  897
      ||||||| | |||  ||||||| |||||||||||||||||||||||||||
seq2  CTTTACATTAATGCTCTGTGAA-TATTTCCTCAAACTAAGGCCTATTTTC  899

seq1  TAGTCTTTTATTGAGAACGCCATCATTAGTGAGTTCATCCACTGTTACAA  947
      |||||||||| |||||||| |||||||||||||||||||||||||||| |
seq2  TAGTCTTTTAATGAGAACGTCATCATTAGTGAGTTCATCCACTGTTAC-A  948

seq1  TTAACACCCATCCCTACCATAGATACAATTACTTCAGAATAGTGTCAATA  997
      |||||  |||| ||||||| || |||||||||||||||||| |||||| |
seq2  TTAACCACCAT-CCTACCAAAG-TACAATTACTTCAGAATAATGTCAA-A  995

seq1  GCTGAAGACCAAGATTACAAAATATTACCAATTTTTGAGGCAGTGCAGGG  1047
      |||||||||  |||  | | ||||||||||||||||||||| ||| ||||
seq2  GCTGAAGAC--AGA--ATATAATATTACCAATTTTTGAGGCTGTGTAGGG  1041

seq1  GACCTTTCATATCCAAACTTGATCACTGC  1076
      || ||||| ||||| |||| |||||||||
seq2  GATCTTTCCTATCC-AACTCGATCACTGC  1069