BAC Information

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BAC

Clone NameB6Ng01-063A17
Chromosome11 (Build37)
Map Location 113,390,266 - 113,531,940
singlet/doubletdoublet
Overlap geneSlc39a11, Sstr2, Cog1, D11Wsu99e
Upstream geneLOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik
Downstream geneD11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063A17.bB6Ng01-063A17.g
ACCDH883261DH883262
length1,134490
definitionDH883261|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A17, 5' end.DH883262|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,390,266 - 113,391,404)(113,531,445 - 113,531,940)
sequence
gaattctgtcatccctgctgatgaaggggagcagtgggggcagggagaca
agaacgtatgacaggaagtgtttaaaccctcgtttttgagtctattgtct
gcatttttaaagtgattttttttaaccttccaaattaaagtaacgcacag
gctcacacagatgccctcactctgacaaacgctggctgagtaattgcttg
aaatcagggagtgtttcaagggtgggaagccagcatagactttgcaagtc
tctgtggataacatactgaacaatctactgaaagaatcggtgattccctt
gctgttgagagcaactgtagccaattacttagtccaaacacttcacttaa
caggtagggtaggcaagactcagctacataaagtggctttcccaaaggcc
ccagagctaaatgatgtcagacatgactgactggcccaacctccaaaaag
ttagtaccatcctctaaccccgccaagatgcagtcctttgtgaaattctg
gaaacctctgagtaaagaccaggtgtaggctaccacctgtcttcatcagg
caaaggattctgggataatggggtgggggcgtgacatcagcatcagcaac
atggaaggtatcagatgttggcagggatgtagcaaaaacgcactattgat
ggggttatacactaacacagctgtcatggagaacgtggaggttccttgaa
aaattaaaaatagaactgtcacatgatacagcgatgcagctggggagata
cctgaaggcaataaagcgagggtgtcaatgcgcgaggcacacttctgctt
atgccagaacgtcaggcgactagtgaacaactggacgagcctactagaac
ctgcatctggaagaggaagggggcctcataaatttacttctctaatagcc
cccaagtgtcggagatgtagagaggcaaacaggcagttaaagatcacagt
gtgattcgccgcctggaagcacagttcgagtttggaacggcaaaccaagc
atgcacacaacggactccacaccttacctcctctgggtgacctgcaccac
agaggcttccacgtgacatctactctggacgggagcttcaggcacgcgca
cacaatgaaagaaggacggggggtgggggggtgt
actgtgtagctcagcttagccttgaacttgatttttgtgatccaacctct
acctctcaagtgctgggattgcaggcatgagctaccaggcccagctaaag
ctcttctatcttgaatcttctgtgggatagtaggtacatgccaaaacata
gaattgttttgagtagctcttgggtgaggaactaggactgtttatagctc
tgtggtaagggattttgggggtaggaggatagaatcttggggtagccagg
ctgcccttagacttctgatgatggtgctgcctttcatcactgatgtggga
ttacaggagtgtgccatgttactcacgggagtggttcctttgtaggttcg
tataaattgaaagcatcggtgaatgaggagatagggataaagagaagcta
aggcctgaaggattaaaatgctttttctagatggacgtagtgacagggca
tagtgtaacacaccgttagtctcagcactcaggaggcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_113390266_113391404
seq2: B6Ng01-063A17.b_37_1169

seq1  GAATTCTGTCATCCCTGCTGATGAAGGGGAGCAGTGGGGGCAGGGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATCCCTGCTGATGAAGGGGAGCAGTGGGGGCAGGGAGACA  50

seq1  AGAACGTATGACAGGAAGTGTTTAAACCCTCGTTTTTGAGTCTATTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTATGACAGGAAGTGTTTAAACCCTCGTTTTTGAGTCTATTGTCT  100

seq1  GCATTTTTAAAGTGATTTTTTTTAACCTTCCAAATTAAAGTAACGCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTAAAGTGATTTTTTTTAACCTTCCAAATTAAAGTAACGCACAG  150

seq1  GCTCACACAGATGCCCTCACTCTGACAAACGCTGGCTGAGTAATTGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACAGATGCCCTCACTCTGACAAACGCTGGCTGAGTAATTGCTTG  200

seq1  AAATCAGGGAGTGTTTCAAGGGTGGGAAGCCAGCATAGACTTTGCAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGGAGTGTTTCAAGGGTGGGAAGCCAGCATAGACTTTGCAAGTC  250

seq1  TCTGTGGATAACATACTGAACAATCTACTGAAAGAATCGGTGATTCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGATAACATACTGAACAATCTACTGAAAGAATCGGTGATTCCCTT  300

seq1  GCTGTTGAGAGCAACTGTAGCCAATTACTTAGTCCAAACACTTCACTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGAGAGCAACTGTAGCCAATTACTTAGTCCAAACACTTCACTTAA  350

seq1  CAGGTAGGGTAGGCAAGACTCAGCTACATAAAGTGGCTTTCCCAAAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGGGTAGGCAAGACTCAGCTACATAAAGTGGCTTTCCCAAAGGCC  400

seq1  CCAGAGCTAAATGATGTCAGACATGACTGACTGGCCCAACCTCCAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTAAATGATGTCAGACATGACTGACTGGCCCAACCTCCAAAAAG  450

seq1  TTAGTACCATCCTCTAACCCCGCCAAGATGCAGTCCTTTGTGAAATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACCATCCTCTAACCCCGCCAAGATGCAGTCCTTTGTGAAATTCTG  500

seq1  GAAACCTCTGAGTAAAGACCAGGTGTAGGCTACCACCTGTCTTCATCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCTGAGTAAAGACCAGGTGTAGGCTACCACCTGTCTTCATCAGG  550

seq1  CAAAGGATTCTGGGATAATGGGGTGGGGGCGTGACATCAGCATCAGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATTCTGGGATAATGGGGTGGGGGCGTGACATCAGCATCAGCAAC  600

seq1  ATGGAAGGTATCAGATGTTGGCAGGGATGTAGCAAAAACGCACTATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGTATCAGATGTTGGCAGGGATGTAGCAAAAACGCACTATTGAT  650

seq1  GGGGTTATACACTAACACAGCTGTCATGGAGAACGTGGAGGTTCCTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTATACACTAACACAGCTGTCATGGAGAACGTGGAGGTTCCTTGAA  700

seq1  AAATTAAAAATAGAACTGTCACATGATACAGCGATGCAGCTGGGGAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAATAGAACTGTCACATGATACAGCGATGCAGCTGGGGAGATA  750

seq1  CCTGAAGGCAATAAAGCGAGGGTGTCAATGCGCGAGGCACACTTCTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGCAATAAAGCGAGGGTGTCAATGCGCGAGGCACACTTCTGCTT  800

seq1  ATGCCAGAACGTCAGGCGACTAGTGAACAACTGGACGAGCCTACTAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGAACGTCAGGCGACTAGTGAACAACTGGACGAGCCTACTAGAAC  850

seq1  CTGCATCTGGAAGAGGAAAGGGGGCCTCATAAATTTACTTCTCTAATAGC  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGCATCTGGAAGAGG-AAGGGGGCCTCATAAATTTACTTCTCTAATAGC  899

seq1  CCCCAAGTGTCGGAGATGTAGAGAGGCAAACAGGCAGTTAAAGATCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGTGTCGGAGATGTAGAGAGGCAAACAGGCAGTTAAAGATCACAG  949

seq1  TGTGATTCGCCGCCTGGAAGCACAGTTCGAGTTTGGAACGGCAAAACCAA  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGATTCGCCGCCTGGAAGCACAGTTCGAGTTTGGAACGGC-AAACCAA  998

seq1  GCATGCACACAACGGACTCCACACCTTA-CTCCTCTGGGGTGACCTGCAC  1049
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  GCATGCACACAACGGACTCCACACCTTACCTCCTCT-GGGTGACCTGCAC  1047

seq1  CACAGGAGGC-TCCACGTGACATCTACTCTGGACGGGAGCCTACAAGGCA  1098
      |||| ||||| ||||||||||||||||||||||||||||| |   |||||
seq2  CACA-GAGGCTTCCACGTGACATCTACTCTGGACGGGAGCTT--CAGGCA  1094

seq1  CGCAGCACACGAATGAAGAAGGGACGGGGGGGGGGGGGGTG  1139
      ||| |||||| ||||||  | |||||||||| |||||||||
seq2  CGC-GCACAC-AATGAAAGAAGGACGGGGGGTGGGGGGGTG  1133

seq1: chr11_113531445_113531940
seq2: B6Ng01-063A17.g_69_564 (reverse)

seq1  TCTGCCTCCTGAGTGCTGAGACTAACGGTGTGTTACACTATGCCCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGAGTGCTGAGACTAACGGTGTGTTACACTATGCCCTGTCA  50

seq1  CTACGTCCATCTAGAAAAAGCATTTTAATCCTTCAGGCCTTAGCTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTCCATCTAGAAAAAGCATTTTAATCCTTCAGGCCTTAGCTTCTCT  100

seq1  TTATCCCTATCTCCTCATTCACCGATGCTTTCAATTTATACGAACCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCTATCTCCTCATTCACCGATGCTTTCAATTTATACGAACCTACA  150

seq1  AAGGAACCACTCCCGTGAGTAACATGGCACACTCCTGTAATCCCACATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCACTCCCGTGAGTAACATGGCACACTCCTGTAATCCCACATCA  200

seq1  GTGATGAAAGGCAGCACCATCATCAGAAGTCTAAGGGCAGCCTGGCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAAGGCAGCACCATCATCAGAAGTCTAAGGGCAGCCTGGCTACC  250

seq1  CCAAGATTCTATCCTCCTACCCCCAAAATCCCTTACCACAGAGCTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTCTATCCTCCTACCCCCAAAATCCCTTACCACAGAGCTATAAA  300

seq1  CAGTCCTAGTTCCTCACCCAAGAGCTACTCAAAACAATTCTATGTTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTAGTTCCTCACCCAAGAGCTACTCAAAACAATTCTATGTTTTGG  350

seq1  CATGTACCTACTATCCCACAGAAGATTCAAGATAGAAGAGCTTTAGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCTACTATCCCACAGAAGATTCAAGATAGAAGAGCTTTAGCTGG  400

seq1  GCCTGGTAGCTCATGCCTGCAATCCCAGCACTTGAGAGGTAGAGGTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTAGCTCATGCCTGCAATCCCAGCACTTGAGAGGTAGAGGTTGGA  450

seq1  TCACAAAAATCAAGTTCAAGGCTAAGCTGAGCTACACAGTGAATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAATCAAGTTCAAGGCTAAGCTGAGCTACACAGTGAATTC  496