BAC Information

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BAC

Clone NameB6Ng01-063F13
Chromosome11 (Build37)
Map Location 61,043,304 - 61,044,241
singlet/doubletsinglet
Overlap genenone
Upstream geneTom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1
Downstream geneAldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063F13.bB6Ng01-063F13.g
ACCDH883471DH883472
length1,239940
definitionDH883471|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F13, 5' end.DH883472|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaaaaaaaaaaaaaaaaaaaaaaaaaagccgggcagtggtggc
gcacgcctttaatcccagcacttgggaggcagaggcaggcagatttctga
gttcgaggccagcctggtctacagagttccaggacagccagggctataca
gagaaatcctgtctcgaaaaacaaaaaagcaacaacaacaacaacaaaac
aaaacaaaacaaaacaaaaataccgtgactgaaagcagattaaggaagag
cttgttttagtttccatttgtagagggcgagagtccacagcggtgggaag
gactcaacgtggccatacagcaggaagctgtgtgagagagaaccagaagt
agggtgaaactgtataccccgccagcccgctccaatatgttcttcagcaa
ggctccacctactaaaagctccataacctctccaaacagtgccaccaact
gggagcctcgtgttcaaaggtgaaccgatggagccatttctcattcaaac
caccatacatcaaaaatatgataattatatgctgagacatataataagaa
aatatctaaagtctttgttctctactgtgtttctgtaagagcaggacact
gtgtgtgcattagacgcgctgaagctcagaacatacatctgaggcaaagc
gcttcgagcagtgttttgttggtgctgtgtggcttggtgccaaggcggcc
tgggatgttcagaaccaaggctgcagtgattgtgcagtggatcatgggag
tgcactgcatgaatacctacgattcatgacacgctgactttgaattgagt
ttcgatcattgcatgttgccatttttttgggaccctacattgagttacca
tacgaggtcacaatgtacagtttaagaatctagtagttaggagacactga
gttgttggtcatccatccatccatccacccaccatcatcatcatcaccca
ccatctatctttcatcatcaaccatctaccaccccactcttactcaaata
acatattgcatacatgccaacaatacccaccattttattattataactga
ccccatcatcaccatccatcttactccccctctttacgtataatatacta
ctactacttacataaagtctatcgaatcatcatcatttacatgatcatcc
atccgcatcatcatcagcatcccgtggtgcaactcatggtcccaaatatt
aacctccactggtttaatacagtccgggggagatagtca
gaattccatacccctaagccccttaccccataaaaacccctagctttcga
gccttgtggccgacatctgttatctcctgtgtgggatgcatgtcagtccg
gaagctccgtaattaaatgacctcatgtaattacatcaaggcgatctgtt
ctgttcgtgattcttgggtgcaccccggatcaggaattgagtgggggttt
ccccacttggtctggcagtacatccatccccgtgagtctagccactggga
gacaggagaggagctgaagctcaaggccacccttggctacaaagtgagtt
tgaagccagcttgggatacagacgagcttgtctcaaaggcaacaaaataa
ccacaacatagtaaatctaacaactaaaaccactctgcaagagggaaggg
aagaggtcttattgtcactgtgattgttgccaccagacatggccttctgg
ctccacggccgcatttatgattttatctgttaatcccatcaagggagaat
aaaatcactaccacaatttttgagctaaatttgaagtaagatttttttct
tttttcttttttttttaattaggtattttcttcatttacatttccaatgc
tatcccaaaagtcccccataccctcccccccacttccctacccacccatt
cccacatcttggccctggcgttcccctgtactgaggcatataaagtttgc
aagaccaatgggcctctctttccactgatggccaactaggccatcttctg
atacatatgcagctagatacatgagctctggggggtactggttagttcat
attgttgttccacctatagggttgcagatccctttagctccttgggtact
ttctctagctcctccattgggggccctgtgatccattcaatagctgactg
tgagcatccactctgttgtttgcttaggccccggcatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61043304_61044241
seq2: B6Ng01-063F13.g_68_1007 (reverse)

seq1  GCTATGCCGGGGCCT-AGCAAAC-ACAGAAGTGGATGCTCACAGTCAGCT  48
      ||||||||||||||| ||||||| |||| |||||||||||||||||||||
seq2  GCTATGCCGGGGCCTAAGCAAACAACAG-AGTGGATGCTCACAGTCAGCT  49

seq1  ATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAA  98
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAA  99

seq1  GGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAA  149

seq1  CCAGTA-CCCCCAGAGCTCATGTATCTAGCTGCATATGTATCAGAAGATG  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCCCCCAGAGCTCATGTATCTAGCTGCATATGTATCAGAAGATG  199

seq1  GCCTAGTTGGCCATCAGTGGAAAGAGAGGCCCATTGGTCTTGCAAACTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTGGCCATCAGTGGAAAGAGAGGCCCATTGGTCTTGCAAACTTT  249

seq1  ATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGATGTGGGAATGGGTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGATGTGGGAATGGGTGG  299

seq1  GTAGGGAAGTGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAAGTGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAA  349

seq1  ATGTAAATGAAGAAAATACCTAATTAAAAAAAAAAGAAAAAAGAAAAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGAAGAAAATACCTAATTAAAAAAAAAAGAAAAAAGAAAAAAA  399

seq1  TCTTACTTCAAATTTAGCTCAAAAATTGTGGTAGTGATTTTATTCTCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTCAAATTTAGCTCAAAAATTGTGGTAGTGATTTTATTCTCCCT  449

seq1  TGATGGGATTAACAGATAAAATCATAAATGCGGCCGTGGAGCCAGAAGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGATTAACAGATAAAATCATAAATGCGGCCGTGGAGCCAGAAGGC  499

seq1  CATGTCTGGTGGCAACAATCACAGTGACAATAAGACCTCTTCCCTTCCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGGTGGCAACAATCACAGTGACAATAAGACCTCTTCCCTTCCCT  549

seq1  CTTGCAGAGTGGTTTTAGTTGTTAGATTTACTATGTTGTGGTTATTTTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAGTGGTTTTAGTTGTTAGATTTACTATGTTGTGGTTATTTTGT  599

seq1  TGCCTTTGAGACAAGCTCGTCTGTATCCCAAGCTGGCTTCAAACTCACTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGAGACAAGCTCGTCTGTATCCCAAGCTGGCTTCAAACTCACTT  649

seq1  TGTAGCCAAGGGTGGCCTTGAGCTTCAGCTCCTCTCCTGTCTCCCAGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCAAGGGTGGCCTTGAGCTTCAGCTCCTCTCCTGTCTCCCAGTGG  699

seq1  CTAGACTCACGGGGATGGATGTACTGCCAGACCAAGTGGGGAAACCCCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTCACGGGGATGGATGTACTGCCAGACCAAGTGGGGAAACCCCCA  749

seq1  CTCAATTCCTGATCCGGGGTGCACCCAAGAATCACGAACAGAACAGATCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTCCTGATCCGGGGTGCACCCAAGAATCACGAACAGAACAGATCG  799

seq1  CCTTGATGTAATTACATGAGGTCATTTAATTACGGAGCTTCCGGACTGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATGTAATTACATGAGGTCATTTAATTACGGAGCTTCCGGACTGAC  849

seq1  ATGCATCCCACACAGGAGATAACAGATGTCGGCCACAAGGCTCGAAAGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCCCACACAGGAGATAACAGATGTCGGCCACAAGGCTCGAAAGCT  899

seq1  AGGGGTTTTTATGGGGTAAGGGGCTTAGGGGTATGGAATTC  938
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTTTTATGGGGTAAGGGGCTTAGGGGTATGGAATTC  940