BAC Information

Click to search

BAC

Clone NameB6Ng01-064B24
Chromosome11 (Build37)
Map Location 88,104,717 - 88,229,246
singlet/doubletdoublet
Overlap gene1700106J16Rik, LOC668793, Msi2
Upstream genePpm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064B24.bB6Ng01-064B24.g
ACCDH884007DH884008
length1,116856
definitionDH884007|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B24, 5' end.DH884008|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,228,124 - 88,229,246)(88,104,717 - 88,105,579)
sequence
gaattccacacatggtaacaaatgaagcccctgatgatcacgattgcatt
tgtgtggtggacctgagtcctctgttttactgtaggatgttggagaacag
ggagtgaccttcattttcctaaagaatcttctagaacctgctctggaaac
tcaagtgtcagctctgtatgtcggtgccgtttccctgctagccctcggaa
agtgagctggaaaggacctgagagagtctctttttaccttgggtggctga
gccctaaaacagatgcagaaactgagaaaggctacatctgtctcttatct
gattgataggaaacactgataatcatattgcaaaaagagccagtcggata
ttatcttactatgctttggatttggcctattcatgtctttggggcaaaga
gtgtcttgtttggggctgctgtcagaaattgtcataacttgtgaacaaga
agtctcttagagttttggaagcaagatatcagagtcagggtgccagcatc
tttggtcctaggaaggtccctttacagggttgcagaaagacaccttattg
tagcctgactgggcaggagaggggaacaaagcaaaggtttcatcctcact
ttccaaacttcacctcccaaagctacatgcaacacacacacacacacaca
cacgcacacactcacacacacactcacacacacacacaccccagtccata
gcatagcccctgggagtttgatctgggggacctggcatttgcttatacta
ccttcacttccaagtgcaaagcatgaggtccagaaaacagaaagaggtcc
ccaggtcatgcccagacaagactattaccaggcccctgcgttatcagcat
ctctctccatctctacccaggtccccttgcatattagcgccaacgtgaca
gccaagctcatgcaaagtggtagagccaccatgtgtgggcccacgtggta
ccctggtgcttactgagcatcctcacagatgggtactcataactggtaaa
cgctgtggggaccgaaagagagaatggaggggggcagggagggtggagag
aagcatgcaggatgctgatcgcggtcacccttgcaaattctttagtgacg
accttgctactaaagc
gaattccaggtcgtggatgctttactaggtctaaattcctttctcttgac
gtcttgaagggaagacataggtcagcagttctaatccctaagagatatgg
gagggcaggtggaatgcaaggcctgacgtgggacttcctggctcagggga
acacccagaacttacagatccaatgtgacttgtggccctgaaggctcagg
aggccactaggccttggtgacagcatcagctttcaatttcctgtggctcc
tagaaaaaggggactatgacgtcatcttcccagtggtcctgggaagcaca
ctggagcgtcattcagcaacaccagaggaactgagaaaatgctctcagtg
ctggccttcctacttttgtgtcacagcaatggctgtgacttttgccatcc
cctgtgtgaaacaaagtggcagaaaatgagagacaggaagggagaggccg
gaagcgggggagagacagcagaggaggagaccagaagagacacaccattt
cgttctctcttctaccaatctgggaaatatttattgatggagaacccaac
aggcacaaggccctagttaaataccccacagaccccaagctgctcccttc
tgctccccatccccacccactcttaggtggaattcccaggctgcggtttc
tctgaaggccagtaagtgtcaatgtgtcagcagaaaagctaggggtgcct
ggcatttgagagccactatgaaccgaaattccatttcttctgagtaccac
tgttgtggggcgcaggcaggaccttgagggtaacaggtaagggactcaaa
atctctgtttgcaaatttaccgtgcctagcagatggtagaccgggtaaca
gtatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88228124_88229246
seq2: B6Ng01-064B24.b_42_1157 (reverse)

seq1  GCTTTAGTAGACAAG--CTGCACTAAAGAATTTTGGCAGGCTGACCGCCG  48
      |||||||||| ||||  |  |||||||||| ||||  ||| |||||| ||
seq2  GCTTTAGTAG-CAAGGTCGTCACTAAAGAA-TTTGCAAGGGTGACCG-CG  47

seq1  ATCAGCATCCTGCATGCCTCTCTCCACCCT-CCTG-CCCCCTCCTTTCTT  96
      ||||||||||||||||| |||||||||||| |||| |||||||| ||| |
seq2  ATCAGCATCCTGCATGCTTCTCTCCACCCTCCCTGCCCCCCTCCATTC-T  96

seq1  CTCTTTCCGTCCCCAACAGCGTTT-CCAG-TATGAGTACCCATCTGTGAG  144
      ||||||| |||||| ||||||||| |||| ||||||||||||||||||||
seq2  CTCTTTCGGTCCCC-ACAGCGTTTACCAGTTATGAGTACCCATCTGTGAG  145

seq1  GATGCTCAGTAAGCACCAGGGTACCACGTGGGCCCACACATGGTGGCTCT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAGTAAGCACCAGGGTACCACGTGGGCCCACACATGGTGGCTCT  195

seq1  ACCACTTTGCATTGAGCTTGGCTGTCACGTTGGCGCTAATATGCAAGGGG  244
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTGCA-TGAGCTTGGCTGTCACGTTGGCGCTAATATGCAAGGGG  244

seq1  ACCTGGGTAGAGATGGAGAGAGATGCTGATAACGCAGGGGCCTGGTTATA  294
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACCTGGGTAGAGATGGAGAGAGATGCTGATAACGCAGGGGCCTGGTAATA  294

seq1  GTCTTGTCTGGGCATGACCTGGGGACCTCCTTCTGTTTTCTGGACCTCAT  344
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCTTGTCTGGGCATGACCTGGGGACCTCTTTCTGTTTTCTGGACCTCAT  344

seq1  GCTTTGCACTTGGAAGTGAAGGTAGTATAAGCAAATGCCAGGTCCCCCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCACTTGGAAGTGAAGGTAGTATAAGCAAATGCCAGGTCCCCCAG  394

seq1  ATCAAAACTCCCA-GGGCTCTGCTATGGACTGGGGTGTGTGTGTGTGTGT  443
      ||| ||||||||| ||||| ||||||||||||||      ||||||||||
seq2  ATC-AAACTCCCAGGGGCTATGCTATGGACTGGG------GTGTGTGTGT  437

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTG  493
      ||||| ||||||||||| ||||||| ||||||||||||||||||||||||
seq2  GTGTGAGTGTGTGTGTGAGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTTG  487

seq1  CATGTTGCTTTGGGAGGTGAAGTTTGGAAAGTGAGGATGAAACCTTTGCT  543
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCTTTGGGAGGTGAAGTTTGGAAAGTGAGGATGAAACCTTTGCT  537

seq1  TTGTTCCCCTCTCCTGCCCAGTCAGGCTACAATAAGGTGTCTTTCTGCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCCTCTCCTGCCCAGTCAGGCTACAATAAGGTGTCTTTCTGCAA  587

seq1  CCCTGTAAAGGGACCTTCCTAGGACCAAAGATGCTGGCACCCTGACTCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAAAGGGACCTTCCTAGGACCAAAGATGCTGGCACCCTGACTCTG  637

seq1  ATATCTTGCTTCCAAAACTCTAAGAGACTTCTTGTTCACAAGTTATGACA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGCTTCCAAAACTCTAAGAGACTTCTTGTTCACAAGTTATGACA  687

seq1  ATTTCTGACAGCAGCCCCAAACAAGACACTCTTTGCCCCAAAGACATGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGACAGCAGCCCCAAACAAGACACTCTTTGCCCCAAAGACATGAA  737

seq1  TAGGCCAAATCCAAAGCATAGTAAGATAATATCCGACTGGCTCTTTTTGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAAATCCAAAGCATAGTAAGATAATATCCGACTGGCTCTTTTTGC  787

seq1  AATATGATTATCAGTGTTTCCTATCAATCAGATAAGAGACAGATGTAGCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATTATCAGTGTTTCCTATCAATCAGATAAGAGACAGATGTAGCC  837

seq1  TTTCTCAGTTTCTGCATCTGTTTTAGGGCTCAGCCACCCAAGGTAAAAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGTTTCTGCATCTGTTTTAGGGCTCAGCCACCCAAGGTAAAAAG  887

seq1  AGACTCTCTCAGGTCCTTTCCAGCTCACTTTCCGAGGGCTAGCAGGGAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCTCAGGTCCTTTCCAGCTCACTTTCCGAGGGCTAGCAGGGAAA  937

seq1  CGGCACCGACATACAGAGCTGACACTTGAGTTTCCAGAGCAGGTTCTAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACCGACATACAGAGCTGACACTTGAGTTTCCAGAGCAGGTTCTAGA  987

seq1  AGATTCTTTAGGAAAATGAAGGTCACTCCCTGTTCTCCAACATCCTACAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTTAGGAAAATGAAGGTCACTCCCTGTTCTCCAACATCCTACAG  1037

seq1  TAAAACAGAGGACTCAGGTCCACCACACAAATGCAATCGTGATCATCAGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGAGGACTCAGGTCCACCACACAAATGCAATCGTGATCATCAGG  1087

seq1  TTGCTTCATTTGTTACCATGTGTGGAATTC  1123
        ||||||||||||||||||||||||||||
seq2  -GGCTTCATTTGTTACCATGTGTGGAATTC  1116

seq1: chr11_88104717_88105579
seq2: B6Ng01-064B24.g_67_918

seq1  GAATTCCAGGTCGTGGATGCTTTACTAGGTCTAAATTCCTTTCTCTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCGTGGATGCTTTACTAGGTCTAAATTCCTTTCTCTTGAC  50

seq1  GTCTTGAAGGGAAGACATAGGTCAGCAGTTCTAATCCCTAAGAGATATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAAGGGAAGACATAGGTCAGCAGTTCTAATCCCTAAGAGATATGG  100

seq1  GAGGGCAGGTGGAATGCAAGGCCTGACGTGGGACTTCCTGGCTCAGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGGTGGAATGCAAGGCCTGACGTGGGACTTCCTGGCTCAGGGGA  150

seq1  ACACCCAGAACTTACAGATCCAATGTGACTTGTGGCCCTGAAGGCTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGAACTTACAGATCCAATGTGACTTGTGGCCCTGAAGGCTCAGG  200

seq1  AGGCCACTAGGCCTTGGTGACAGCATCAGCTTTCAGTTTCCTGTGGCTCC  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGCCACTAGGCCTTGGTGACAGCATCAGCTTTCAATTTCCTGTGGCTCC  250

seq1  TAGAAAAAGGGGACTATGACGTCATCTTCCCAGTGGTCCTGGGAAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGGGGACTATGACGTCATCTTCCCAGTGGTCCTGGGAAGCACA  300

seq1  CTGGAGCGTCATTCAGCAACACCAGAGGAACTGAGAAAATGCTCTCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCGTCATTCAGCAACACCAGAGGAACTGAGAAAATGCTCTCAGTG  350

seq1  CTGGCCTTCCTACTTTTGTGTCACAGCAATGGCTGTGACTTTTGCCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTCCTACTTTTGTGTCACAGCAATGGCTGTGACTTTTGCCATCC  400

seq1  CCTGTGTGAAACAAAGTGGCAGAAAATGAGAGACAGGAAGGGAGAGGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGAAACAAAGTGGCAGAAAATGAGAGACAGGAAGGGAGAGGCCG  450

seq1  GAAGCGGGGGAGAGACAGCAGAGGAGGAGACCAGAAGAGACACACCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGGGGGAGAGACAGCAGAGGAGGAGACCAGAAGAGACACACCATTT  500

seq1  CGTTCTCTCTTCTACCAATCTGGGAAATATTTATTGATGGAGAACCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCTCTTCTACCAATCTGGGAAATATTTATTGATGGAGAACCCAAC  550

seq1  AGGCACAAGGCCCTAGTTAAATACCCCACAGACCCCAAGCTGCTCCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAAGGCCCTAGTTAAATACCCCACAGACCCCAAGCTGCTCCCTTC  600

seq1  TGCTCCCCATCCCCACCCACTCTTAGGTGGAATTCCCAGGCTGCGGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCATCCCCACCCACTCTTAGGTGGAATTCCCAGGCTGCGGTTTC  650

seq1  TCTGAAGGCCAGTAGGTGTCAATGTGTCAGCAGAAAAGCTAGGGGTGCCT  700
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGCCAGTAAGTGTCAATGTGTCAGCAGAAAAGCTAGGGGTGCCT  700

seq1  GGCATTTGAGAGCCACCTATGAACCGAAATTCCATTTCTTCTGAGTACCA  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCATTTGAGAGCCA-CTATGAACCGAAATTCCATTTCTTCTGAGTACCA  749

seq1  CTGTTTGTGGGGCAGCAGGCAGGACACTTGAGGGTAAACAGGTTAAGGGA  800
      ||| ||||||||| ||||||||||| ||||||||| |||||| |||||||
seq2  CTG-TTGTGGGGC-GCAGGCAGGAC-CTTGAGGGT-AACAGG-TAAGGGA  794

seq1  CTCAAAAATCTCTGTTTGCCAGAGTTTACCGTGCCTAAGCAGATGGTAGA  850
      ||| |||||||||||||||   | |||||||||||| |||||||||||||
seq2  CTC-AAAATCTCTGTTTGC--AAATTTACCGTGCCT-AGCAGATGGTAGA  840

seq1  CCCAGGTAACAGT  863
       || |||||||||
seq2  -CCGGGTAACAGT  852