BAC Information

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BAC

Clone NameB6Ng01-065J11
Chromosome11 (Build37)
Map Location 54,192,556 - 54,311,523
singlet/doubletdoublet
Overlap gene4930404A10Rik, LOC100041400, LOC100041411, Fnip1
Upstream geneAff4, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6
Downstream geneRapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065J11.bB6Ng01-065J11.g
ACCDH885020DH885021
length1,0661,157
definitionDH885020|Mus musculus domesticus DNA, BAC clone: B6Ng01-065J11, 5' end.DH885021|Mus musculus domesticus DNA, BAC clone: B6Ng01-065J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,192,556 - 54,193,625)(54,310,349 - 54,311,523)
sequence
gaattccggaggaaaagggatgaatataggttttcttaggggatagaggg
agagcatctcaggtagagatgcccagagtgaggattggtaggatttcagg
tcctgagcttgggaggctcagggattggtagctctttttcaccccctttt
tcttgcatggggcccgtgggttagaatgggaagtccttcctggccacatg
tggctttgactgaggtgccacctctgtggagctgctccgggaggctggag
aggtggtgctgccattatgggcagctatggtggtactaacaatggctgca
ggctgaggcaggaaagaaggtgttgccactgggaacaattcctcatgatg
gcagcaggctaaggcttgctcctttgacaggtgccaccattttgacaact
tctgcagtggcatcttatggcagccataggctggagtgggaaggaggggc
cagctgccattttaatggctcttgctgcagactgttcagagactacatag
gtgctgggcgtttcttgtccaggttgtttttagctcacaggagaagtcag
tggcgagtcaggctctcttctttactttttttgggggttagtggccaagg
ttttctgaagacttcccttgctcatctctgaattttattagtttcagtag
tatccacagcttttcattttttcctgtggcaatataaacaaacatgtatc
cccaatgcaaaacattcactgacttcctttctgatgttaccacatccttt
atagtttataggttgatttaattccacagttttctataacacagggtctc
tcagctgctgttattcctttctctttaatgttcagaaaattaaagataac
agagcactatttagcctatcctggtgaatggggaggtcttattcttccct
tttgtttataagcatttcctttaagtgagttagatctctttctacaacta
cttgttctgtaggactgtgtgatatacctgtatgtggctttatatttata
atatgcaagaattgcttcatcttactggaaacaatgtgggggacattgta
atatcccagaaaagaa
gaattcttttgcccatgcaagttttcctttagccagagaatgctctagca
catccatggaagtcaggagccagcttataggagctagttctcactttctc
cctcagtgacacaggctctctcgtttctcctacactgtagactccaggcc
agtaggctcatgagcttccagacgactctcctttctccagcccagcaaaa
tgtccttagttcttactcatttataagttctctgctgtgacttgttttaa
tgctctcccaacttactaaaaatcactggtgagaacttttaaatgagtga
gaactaaagacattttgctgggcattgtggcacatgtatgcaatctcagc
ccttgagagaggaaagaggactgctctgagtgcaggttcagcctggccta
caaagtgagttccaggcccgtcagggatatatagtgagatcctgtctcaa
aaatccccaaacaacaatgaagaattaaagatattttaggaaaaattttt
ttaaaaaatctttttaacaagaattttatagattaagaatgctataaaat
attaatataacacaaattagtaataaaatataaactttatattttaattt
ctgtgagtgcttcctgattatatacatatgcatcacatgtggtgtcttct
gagaccaaaggataacatcacattccctagaactgaggttataaatggtt
gtaaggtgctatgtgtgggctgaaaaccatgaatcctcctgcaagagtag
tacatgatctcaactgcaaagtcaccacctcttgtgccccccccatacac
attttaaaatttagttatgatgtactcattgttctagttaccttactatg
cctaaagaaatggatgccctaactaggctaatgaagtttcacttgaacta
agctaaccctatacctatctgacagaacatctatacttctgtcaaacatg
gaactcttctcatatgtgtgtttcaatggtctaggattaaagctacatcc
cacactcccaatgtgatttaacaacataatggcaacaggctgactgattt
actttcatatggccagaaatgaagaatgttaaaatgcattctagacactc
tgaaggctaggcagaagactgaagatgcctggcaaccagtaagacctggt
ctgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54192556_54193625
seq2: B6Ng01-065J11.b_44_1108

seq1  AATTCCGGAGGAAAAGGGATGAATATAGGTTTTCTTAGGGGATAGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCGGAGGAAAAGGGATGAATATAGGTTTTCTTAGGGGATAGAGGGA  50

seq1  GAGCATCTCAGGTAGAGATGCCCAGAGTGAGGATTGGTAGGATTTCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTCAGGTAGAGATGCCCAGAGTGAGGATTGGTAGGATTTCAGGT  100

seq1  CCTGAGCTTGGGAGGCTCAGGGATTGGTAGCTCTTTTTCACCCCCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTTGGGAGGCTCAGGGATTGGTAGCTCTTTTTCACCCCCTTTTT  150

seq1  CTTGCATGGGGCCCGTGGGTTAGAATGGGAAGTCCTTCCTGGCCACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGGGGCCCGTGGGTTAGAATGGGAAGTCCTTCCTGGCCACATGT  200

seq1  GGCTTTGACTGAGGTGCCACCTCTGTGGAGCTGCTCCGGGAGGCTGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGACTGAGGTGCCACCTCTGTGGAGCTGCTCCGGGAGGCTGGAGA  250

seq1  GGTGGTGCTGCCATTATGGGCAGCTATGGTGGTACTAACAATGGCTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCTGCCATTATGGGCAGCTATGGTGGTACTAACAATGGCTGCAG  300

seq1  GCTGAGGCAGGAAAGAAGGTGTTGCCACTGGGAACAATTCCTCATGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCAGGAAAGAAGGTGTTGCCACTGGGAACAATTCCTCATGATGG  350

seq1  CAGCAGGCTAAGGCTTGCTCCTTTGACAGGTGCCACCATTTTGACAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCTAAGGCTTGCTCCTTTGACAGGTGCCACCATTTTGACAACTT  400

seq1  CTGCAGTGGCATCTTATGGCAGCCATAGGCTGGAGTGGGAAGGAGGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGGCATCTTATGGCAGCCATAGGCTGGAGTGGGAAGGAGGGGCC  450

seq1  AGCTGCCATTTTAATGGCTCTTGCTGCAGACTGTTCAGAGACTACATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCATTTTAATGGCTCTTGCTGCAGACTGTTCAGAGACTACATAGG  500

seq1  TGCTGGGCGTTTCTTGTCCAGGTTGTTTTTAGCTCACAGGAGAAGTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCGTTTCTTGTCCAGGTTGTTTTTAGCTCACAGGAGAAGTCAGT  550

seq1  GGCGAGTCAGGCTCTCTTCTTTACTTTTTTTGGGGGTTAGTGGCCAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGTCAGGCTCTCTTCTTTACTTTTTTTGGGGGTTAGTGGCCAAGGT  600

seq1  TTTCTGAAGACTTCCCTTGCTCATCTCTGAATTTTATTAGTTTCAGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAGACTTCCCTTGCTCATCTCTGAATTTTATTAGTTTCAGTAGT  650

seq1  ATCCACAGCTTTTCATTTTTTCCTGTGGCAATATAAACAAACATGTATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAGCTTTTCATTTTTTCCTGTGGCAATATAAACAAACATGTATCC  700

seq1  CCAATGCAAAACATTCACTGACTTCCTTTCTGATGTTACCACATCC-TTA  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCAATGCAAAACATTCACTGACTTCCTTTCTGATGTTACCACATCCTTTA  750

seq1  TAGTTTATAGGTTGATTTAATTCCACAGTTTTCTATAACACAGGGTCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATAGGTTGATTTAATTCCACAGTTTTCTATAACACAGGGTCTCT  800

seq1  CAGCTGCTGTTATTCCTTTCTCTTTAATGTTCAGAAAATTAAAGATAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGTTATTCCTTTCTCTTTAATGTTCAGAAAATTAAAGATAACA  850

seq1  GAGCACTATTTAGCCTATCCTGGTGAATGGGGAGGTCTTTATTCTTCCCT  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGCACTATTTAGCCTATCCTGGTGAATGGGGAGGTC-TTATTCTTCCCT  899

seq1  TTTGTTTTATAAGCATTTCCTTTAAGGTGAGTTTAGATCTCTTTCTACAA  949
      |||| |||||||||||||||||||| ||||| ||||||||||||||||||
seq2  TTTG-TTTATAAGCATTTCCTTTAA-GTGAG-TTAGATCTCTTTCTACAA  946

seq1  CTACTTGTTCTGTAGGACTGTGTGATATACCTGTAATGT-GCTTTATA-T  997
      |||||||||||||||||||||||||||||||||| |||| |||||||| |
seq2  CTACTTGTTCTGTAGGACTGTGTGATATACCTGT-ATGTGGCTTTATATT  995

seq1  TATAATATGCAAAGAATTGCTTCATCTTACTGGAGACATATGT-GGGGAC  1046
      |||||||||| ||||||||||||||||||||||| ||| |||| ||||||
seq2  TATAATATGC-AAGAATTGCTTCATCTTACTGGAAACA-ATGTGGGGGAC  1043

seq1  ATTGTAATTATCCCAGAAAGAGAA  1070
      ||||||| ||||||||||| ||||
seq2  ATTGTAA-TATCCCAGAAA-AGAA  1065

seq1: chr11_54310349_54311523
seq2: B6Ng01-065J11.g_66_1222 (reverse)

seq1  TTTTCAGACAGGGTCTTACTGTGTTGCCAAGGCTACTTTCAGTCCTCCTG  50
      |||||||||  |||||||||| |||||| |||| |  |||||| || |||
seq2  TTTTCAGACCAGGTCTTACTG-GTTGCC-AGGC-ATCTTCAGT-CTTCTG  46

seq1  CCTTAGCCTCCAGAGTG-CTAGAAATGCATTTTTACATTTCTTTCATGTT  99
      || |||||| ||||||| |||| |||||||||| |||||   ||||| ||
seq2  CC-TAGCCTTCAGAGTGTCTAG-AATGCATTTTAACATT--CTTCAT-TT  91

seq1  CTAGCCATATGAGAATGTAATTCAGTCAGGCTGTTGGCCATTATGTTGTT  149
      || |||||||  ||| |||| |||||||| ||||| ||||||||||||||
seq2  CTGGCCATAT--GAAAGTAAATCAGTCAGCCTGTT-GCCATTATGTTGTT  138

seq1  AAATCACATTTGGGAGTTGTTGGGATGTAGCTTTAATCCTAGACCATTTG  199
      |||||||| ||||||||   |||||||||||||||||||||||||| |||
seq2  AAATCACA-TTGGGAGT--GTGGGATGTAGCTTTAATCCTAGACCA-TTG  184

seq1  AAACACACATATGAGAAGAGTTCCATGTTTGAACAGAAGTATAGATTGTT  249
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  AAACACACATATGAGAAGAGTTCCATGTTTG-ACAGAAGTATAGA-TGTT  232

seq1  CTGTCAAGATAGGTATAGGGTTAGCTTAGTTCAAGTGAAACTTCATTAGC  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTC-AGATAGGTATAGGGTTAGCTTAGTTCAAGTGAAACTTCATTAGC  281

seq1  CTAGTTAGGGCATCCATTTCTTTAGGCATAGTAAGGTAACTAGAACAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAGGGCATCCATTTCTTTAGGCATAGTAAGGTAACTAGAACAATG  331

seq1  AGTACATCATAACTAAATTTTAAAATGTGTATGGGGGGGGCACAAGAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCATAACTAAATTTTAAAATGTGTATGGGGGGGGCACAAGAGGT  381

seq1  GGTGACTTTGCAGTTGAGATCATGTACTACTCTTGCAGGAGGATTCATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTTGCAGTTGAGATCATGTACTACTCTTGCAGGAGGATTCATGG  431

seq1  TTTTCAGCCCACACATAGCACCTTACAACCATTTATAACCTCAGTTCTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCCCACACATAGCACCTTACAACCATTTATAACCTCAGTTCTAG  481

seq1  GGAATGTGATGTTATCCTTTGGTCTCAGAAGACACCACATGTGATGCATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGATGTTATCCTTTGGTCTCAGAAGACACCACATGTGATGCATA  531

seq1  TGTATATAATCAGGAAGCACTCACAGAAATTAAAATATAAAGTTTATATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATAATCAGGAAGCACTCACAGAAATTAAAATATAAAGTTTATATT  581

seq1  TTATTACTAATTTGTGTTATATTAATATTTTATAGCATTCTTAATCTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTAATTTGTGTTATATTAATATTTTATAGCATTCTTAATCTATA  631

seq1  AAATTCTTGTTAAAAAGATTTTTTAAAAAAATTTTTCCTAAAATATCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTGTTAAAAAGATTTTTTAAAAAAATTTTTCCTAAAATATCTTT  681

seq1  AATTCTTCATTGTTGTTTGGGGATTTTTGAGACAGGATCTCACTATATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCATTGTTGTTTGGGGATTTTTGAGACAGGATCTCACTATATAT  731

seq1  CCCTGACGGGCCTGGAACTCACTTTGTAGGCCAGGCTGAACCTGCACTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACGGGCCTGGAACTCACTTTGTAGGCCAGGCTGAACCTGCACTCA  781

seq1  GAGCAGTCCTCTTTCCTCTCTCAAGGGCTGAGATTGCATACATGTGCCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCCTCTTTCCTCTCTCAAGGGCTGAGATTGCATACATGTGCCAC  831

seq1  AATGCCCAGCAAAATGTCTTTAGTTCTCACTCATTTAAAAGTTCTCACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCAGCAAAATGTCTTTAGTTCTCACTCATTTAAAAGTTCTCACCA  881

seq1  GTGATTTTTAGTAAGTTGGGAGAGCATTAAAACAAGTCACAGCAGAGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTAGTAAGTTGGGAGAGCATTAAAACAAGTCACAGCAGAGAAC  931

seq1  TTATAAATGAGTAAGAACTAAGGACATTTTGCTGGGCTGGAGAAAGGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGAGTAAGAACTAAGGACATTTTGCTGGGCTGGAGAAAGGAGA  981

seq1  GTCGTCTGGAAGCTCATGAGCCTACTGGCCTGGAGTCTACAGTGTAGGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCTGGAAGCTCATGAGCCTACTGGCCTGGAGTCTACAGTGTAGGAG  1031

seq1  AAACGAGAGAGCCTGTGTCACTGAGGGAGAAAGTGAGAACTAGCTCCTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGAGAGCCTGTGTCACTGAGGGAGAAAGTGAGAACTAGCTCCTAT  1081

seq1  AAGCTGGCTCCTGACTTCCATGGATGTGCTAGAGCATTCTCTGGCTAAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCTCCTGACTTCCATGGATGTGCTAGAGCATTCTCTGGCTAAAG  1131

seq1  GAAAACTTGCATGGGCAAAAGAATTC  1175
      ||||||||||||||||||||||||||
seq2  GAAAACTTGCATGGGCAAAAGAATTC  1157