BAC Information

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BAC

Clone NameB6Ng01-065N19
Chromosome11 (Build37)
Map Location 37,213,101 - 37,417,988
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148, LOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065N19.bB6Ng01-065N19.g
ACCDH885214DH885215
length1,1031,009
definitionDH885214|Mus musculus domesticus DNA, BAC clone: B6Ng01-065N19, 5' end.DH885215|Mus musculus domesticus DNA, BAC clone: B6Ng01-065N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,213,101 - 37,214,222)(37,416,959 - 37,417,988)
sequence
gaattccaaccactgccatcacatatagtttttgtgggtcaaactcagat
ccacaggtggacaaggcaaatgagcaaatgagctatctctcaagaccaca
cataaaaccttttattgagatagttatcttgaattacatgaagatgaatc
aataaatttctgcatatattagtcagttttctcattgctgtgttcgaaat
cctggaaagaggtggtttcaatagggaaaggtttatttaggctcacattt
caaattcaaattcaaatttaattttgactcacattcacaaattcatcatt
tagggcaggtcatgacatcagaagctagaggcagctgatccaactgcagt
cttcatcacaaagactaggtggatgaaggttgctgctctgttcactaatt
cctttttaatttggtccaggaccacaatctatggaacagagccacccaca
atcaacatggctcttcccactataattaccctaatctagagtccctctca
gacaggttgggatcctcttctaagtgactcttgaacccatcaagttgaga
gtggagattaaccatggaactatgatttcttccatcctcatctctacttt
gttatccaaaatttcacatatctctgcagagatcattttctctttaggtt
gtggtttttatttttttctcagataattttttttttttaccttctaaaaa
gccaatgagcccaccctccctcatgcctgacttcctcccctgccccatcc
tcctcttttctctgtctccctctccacacttctctctcctttcctctctt
tatctttatctcctaccccctcccttctcccattccatcccctttattag
aacagatgaggtcttcatttctttcaatgagcacatgcttagatgtgcct
ctgggcagctgtatgcctatggaggaatgctcattcaccagagaagtgaa
cccagaaacccaagaatcagacatgccgttttaagaatgctgaataaaac
ttttgtcatgcctgcgtattcatagtttcttagcgattatcttgtgttta
agatcataaactttgacttagatactgtccagcactgccacacaattgtt
ctg
gaattctttctagcttctcacctcagtgcctccttgggatggaggtgagg
ttccaggaaagcctaggacacttccccagtgctgagttgcctgggatgga
ttcctgaaggagtaccttccttttcgtattttgtgtgtcgcccccacatc
tcagaaagggtttcttcaaatctgaatctttaacttcactccatctcagg
tactggaagaaatacccaactgtttcccctaggtccagaagtttgttctg
tcattctcagtatcaaggggattctttgttactttgccttaataaatggg
ccttacctggtagctgtgttagaattctctgtggcatgataacaagttta
aaatcagacaatgttctagtagaggccaggtgttcaaagtatagtaaaca
gctccctaaagattagaaaatgaatatttaactagatgactacatttgat
ttccttcattcattttttattatttcagtgaaaacctttttgatggaaat
cacattgacagagttttaatatcttatggtaaatgaaagctgtcactcca
gtggggttagtatttctttatagtgacatttggtaaactctggtggccag
taatatcttttttcatagttacaacttaggtaattctatgcagactgtac
atcaaggaagacaatttgtgctaagaggttgaaattataatgaaactagt
tatattaattaggttctgttcataacgagcttcatgattgctttttaaga
aggaggagagaaacctaagctgtacaggctttgtgtgcatagctatattt
cttaaattattagaggctaacggagccaccatatccatgaaatgagaatt
tcatgcagtgttatttaggacccttctcaaagctagactcaaatgcaaac
tctgtgagtgatagtcattaaaactggtgtggtcattacctgagctctaa
gactgatcacaaacaagaacatacactggctgaacaagtccccagcacta
ctgaagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37213101_37214222
seq2: B6Ng01-065N19.b_48_1150

seq1  GAATTCCAACCACTGCCATCACATATAGTTTTTGTGGGTCAAACTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCACTGCCATCACATATAGTTTTTGTGGGTCAAACTCAGAT  50

seq1  CCACAGGTGGACAAGGCAAATGAGCAAATGAGCTATCTCTCAAGACCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGTGGACAAGGCAAATGAGCAAATGAGCTATCTCTCAAGACCACA  100

seq1  CATAAAACCTTTTATTGAGATAGTTATCTTGAATTACATGAAGATGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACCTTTTATTGAGATAGTTATCTTGAATTACATGAAGATGAATC  150

seq1  AATAAATTTCTGCATATATTAGTCAGTTTTCTCATTGCTGTGTTCGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTCTGCATATATTAGTCAGTTTTCTCATTGCTGTGTTCGAAAT  200

seq1  CCTGGAAAGAGGTGGTTTCAATAGGGAAAGGTTTATTTAGGCTCACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAGAGGTGGTTTCAATAGGGAAAGGTTTATTTAGGCTCACATTT  250

seq1  CAAATTCAAATTCAAATTTAATTTTGACTCACATTCACAAATTCATCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCAAATTCAAATTTAATTTTGACTCACATTCACAAATTCATCATT  300

seq1  TAGGGCAGGTCATGACATCAGAAGCTAGAGGCAGCTGATCCAACTGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAGGTCATGACATCAGAAGCTAGAGGCAGCTGATCCAACTGCAGT  350

seq1  CTTCATCACAAAGACTAGGTGGATGAAGGTTGCTGCTCTGTTCACTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCACAAAGACTAGGTGGATGAAGGTTGCTGCTCTGTTCACTAATT  400

seq1  CCTTTTTAATTTGGTCCAGGACCACAATCTATGGAACAGAGCCACCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTAATTTGGTCCAGGACCACAATCTATGGAACAGAGCCACCCACA  450

seq1  ATCAACATGGCTCTTCCCACTATAATTACCCTAATCTAGAGTCCCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACATGGCTCTTCCCACTATAATTACCCTAATCTAGAGTCCCTCTCA  500

seq1  GACAGGTTGGGATCCTCTTCTAAGTGACTCTTGAACCCATCAAGTTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTGGGATCCTCTTCTAAGTGACTCTTGAACCCATCAAGTTGAGA  550

seq1  GTGGAGATTAACCATGGAACTATGATTTCTTCCATCCTCATCTCTACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATTAACCATGGAACTATGATTTCTTCCATCCTCATCTCTACTTT  600

seq1  GTTATCCAAAATTTCACATATCTCTGCAGAGATCATTTTCTCTTTAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCAAAATTTCACATATCTCTGCAGAGATCATTTTCTCTTTAGGTT  650

seq1  GTGGTTTTTATTTTTTTCTCAGATAA-TTTTTTTTTTTACCTTCTAAAAA  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTGGTTTTTATTTTTTTCTCAGATAATTTTTTTTTTTTACCTTCTAAAAA  700

seq1  GCCAATGAGCCCACCCTCCCTCATGCCTGACTTCCTCCCCTGCCCCATCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGAGCCCACCCTCCCTCATGCCTGACTTCCTCCCCTGCCCCATCC  750

seq1  TCCTCTTTTCTCTGTCTCCCTCTCCACACTTCTCTCTCCTTCCCTCTCTT  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCTCTTTTCTCTGTCTCCCTCTCCACACTTCTCTCTCCTTTCCTCTCTT  800

seq1  TATCTTTATCTCCTACCCCCTCCCTTCTCCCATTCCATCCCCTTTATTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATCTCCTACCCCCTCCCTTCTCCCATTCCATCCCCTTTATTAG  850

seq1  AACAGATGAGGTCTTCATTTCTTTTCAATGAGCACATGCTTAGGATGTGC  899
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  AACAGATGAGGTCTTCATTTC-TTTCAATGAGCACATGCTTA-GATGTGC  898

seq1  CTCTGGCCAGCTGTATGCCTATGGAGGAAATGCTCATTCACAGGAGAAGT  949
      |||||| |||||||||||||||||||| |||||||||||||  |||||| 
seq2  CTCTGGGCAGCTGTATGCCTATGGAGG-AATGCTCATTCACCAGAGAAG-  946

seq1  TGAACCCCAGAAACCCAAGGAAATCAGACATGCCGTTTTTAAAGACATTG  999
      |||| ||||||||||||||  ||||||||||||||||||  |||  | ||
seq2  TGAA-CCCAGAAACCCAAG--AATCAGACATGCCGTTTT--AAG--AATG  989

seq1  CTTGATAGACTTTTTGTCCATTGCCCTGCTGTATTTCATAAGTTTCTTAG  1049
      ||  ||| |  |||||| |||   ||||| ||| ||||| ||||||||| 
seq2  CTGAATAAAACTTTTGT-CAT--GCCTGC-GTA-TTCAT-AGTTTCTTA-  1032

seq1  GCAGATATCTT-TGTTTAAGATCATTACACTTTTGACTTTAGTACTTGTC  1098
      ||   |||||| |||||||||||| || || ||||||||   ||| ||| 
seq2  GCGATTATCTTGTGTTTAAGATCA-TAAAC-TTTGACTTAGATAC-TGT-  1078

seq1  CCAGCACTGCCAC-CAATTGTTCTG  1122
      ||||||||||||| |||||||||||
seq2  CCAGCACTGCCACACAATTGTTCTG  1103

seq1: chr11_37416959_37417988
seq2: B6Ng01-065N19.g_69_1077 (reverse)

seq1  CAGCTTCAGTTAGTTGCTGGGGGACCTCTGTTCAGCCAGTGTATGTTCTT  50
      ||||||||| ||| |||| ||||||   ||||||||||||||||||||||
seq2  CAGCTTCAG-TAG-TGCT-GGGGAC--TTGTTCAGCCAGTGTATGTTCTT  45

seq1  TGGTTTGTGACTCAGTCTCTCAGAGCTCAGGTTAATTGACCAACCACCAG  100
        |||||||| ||||  ||| |||||||||||  | ||||||  ||||||
seq2  --GTTTGTGA-TCAG--TCTTAGAGCTCAGGT--AATGACCA--CACCAG  86

seq1  TTTTTAATGACTATCACCTCCACAGAGTTTTGCATTTTGAGTCTAGCTTT  150
       ||||||||||||||||   ||||||| |||||| |||||||||||| ||
seq2  -TTTTAATGACTATCAC--TCACAGAG-TTTGCA-TTTGAGTCTAGC-TT  130

seq1  TGAGAAGGGTCCTAAAATACACTGCATGAAATTCTCATTTCATGGATATG  200
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  TGAGAAGGGTCCTAAATAACACTGCATGAAATTCTCATTTCATGGATATG  180

seq1  GTGGCTCCGTTAGCCTCTAATAATTTAAGAAATATAGCTATGCACACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCCGTTAGCCTCTAATAATTTAAGAAATATAGCTATGCACACAAA  230

seq1  GCCTGTACAGCTTAGGTTTCTCTCCTCCTTCTTAAAAAGCAATCATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTACAGCTTAGGTTTCTCTCCTCCTTCTTAAAAAGCAATCATGAAG  280

seq1  CTCGTTATGAACAGAACCTAATTAATATAACTAGTTTCATTATAATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCGTTATGAACAGAACCTAATTAATATAACTAGTTTCATTATAATT-TC  329

seq1  AACCTCTTAGCACAAATTGTCTTCCTTGATGTACAGTCTGCATAGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTAGCACAAATTGTCTTCCTTGATGTACAGTCTGCATAGAATTA  379

seq1  CCTAAGTTGTAACTATGAAAAAAGATATTACTGGCCACCAGAGTTTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTTGTAACTATGAAAAAAGATATTACTGGCCACCAGAGTTTACCA  429

seq1  AATGTCACTATAAAGAAATACTAACCCCACTGGAGTGACAGCTTTCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACTATAAAGAAATACTAACCCCACTGGAGTGACAGCTTTCATTT  479

seq1  ACCATAAGATATTAAAACTCTGTCAATGTGATTTCCATCAAAAAGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAGATATTAAAACTCTGTCAATGTGATTTCCATCAAAAAGGTTTT  529

seq1  CACTGAAATAATAAAAAATGAATGAAGGAAATCAAATGTAGTCATCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATAATAAAAAATGAATGAAGGAAATCAAATGTAGTCATCTAGT  579

seq1  TAAATATTCATTTTCTAATCTTTAGGGAGCTGTTTACTATACTTTGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTCATTTTCTAATCTTTAGGGAGCTGTTTACTATACTTTGAACA  629

seq1  CCTGGCCTCTACTAGAACATTGTCTGATTTTAAACTTGTTATCATGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTCTACTAGAACATTGTCTGATTTTAAACTTGTTATCATGCCAC  679

seq1  AGAGAATTCTAACACAGCTACCAGGTAAGGCCCATTTATTAAGGCAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTCTAACACAGCTACCAGGTAAGGCCCATTTATTAAGGCAAAGT  729

seq1  AACAAAGAATCCCCTTGATACTGAGAATGACAGAACAAACTTCTGGACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAATCCCCTTGATACTGAGAATGACAGAACAAACTTCTGGACCT  779

seq1  AGGGGAAACAGTTGGGTATTTCTTCCAGTACCTGAGATGGAGTGAAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAACAGTTGGGTATTTCTTCCAGTACCTGAGATGGAGTGAAGTTA  829

seq1  AAGATTCAGATTTGAAGAAACCCTTTCTGAGATGTGGGGGCGACACACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCAGATTTGAAGAAACCCTTTCTGAGATGTGGGGGCGACACACAA  879

seq1  AATACGAAAAGGAAGGTACTCCTTCAGGAATCCATCCCAGGCAACTCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGAAAAGGAAGGTACTCCTTCAGGAATCCATCCCAGGCAACTCAGC  929

seq1  ACTGGGGAAGTGTCCTAGGCTTTCCTGGAACCTCACCTCCATCCCAAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAAGTGTCCTAGGCTTTCCTGGAACCTCACCTCCATCCCAAGGA  979

seq1  GGCACTGAGGTGAGAAGCTAGAAAGAATTC  1030
      ||||||||||||||||||||||||||||||
seq2  GGCACTGAGGTGAGAAGCTAGAAAGAATTC  1009