BAC Information

Click to search

BAC

Clone NameB6Ng01-066D08
Chromosome11 (Build37)
Map Location 32,416,578 - 32,417,716
singlet/doubletsinglet
Overlap geneUbtd2
Upstream gene2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b
Downstream gene1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066D08.g
ACCDH885448
length1,114
definitionDH885448|Mus musculus domesticus DNA, BAC clone: B6Ng01-066D08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctatgaatggatttagttctgaggaattaccagtgaaaaattc
catctgtgatggagaccaacaaaaataataaaacacacagagccagcctc
tgatactcttataattacaatttctaatttgaaagacagttaagaaatag
ataaccatttattttaaaacatttatcaactgtgtaatggctgtatttaa
atgatctcgaatgtaaacagacaccagacccatcaaaaacagcaccaagc
accttttggacacagaatttttatgacatacatgtcaaattttttttttt
ccagaaccatcaataacagttacaaaacctaatcttttttttcttttaaa
gtggaacctaaaagagcatagagttttgcttctcttctgggtttgtagtc
ctacccaccaggaggcagtgagactgggagttgtcagtgttccttcccct
cccaccaagttctgctccctgttgacatgcactcagtcctgtggccgtca
tgctggcagcgggcaccctctggcgccctgagcagcacgttagtaagtag
ttagagcttgtattctcagttgagaagtttctagtcttgcttcatagtaa
tcttaacatatctgtggacccaggcttgacagctagctactatgtgatgt
ctttgctgaccctgatgctctgcgtgaccatttctgtagcttcctggccc
cgcctatatattcctgggccaggcaagacagaaatggagtatagctgctt
ccagtccagaatgaaaagcaatcttctccttcctgcctgcagggaatgtg
agtaaaaccctctctgcctgtcctgggaaaactgtgcctattctaagcct
tggagaaaattccaatcaaaatgttcgtgtgtgaaagctaactagtgtca
ttaaactgcattggtgggaacagatggtagcgcctggctcagactgagtg
ctttcacttactctgactccagtcactgtggtgcagggttcctcccacac
ttcccacaaggtgattacctccatctgcccctgggctaagggatgaacaa
gtaatcagctcaccttctctgagagctgcaaggtatatttaaattggagc
cttaaaactgtttt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_32416578_32417716
seq2: B6Ng01-066D08.g_69_1182

seq1  GAATTCCCTATGAATGGATTTAGTTCTGAGGAATTACCAGTGAAAAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATGAATGGATTTAGTTCTGAGGAATTACCAGTGAAAAATTC  50

seq1  CATCTGTGATGGAGACCAACAAAAATAATAAAACACACAGAGCCAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGATGGAGACCAACAAAAATAATAAAACACACAGAGCCAGCCTC  100

seq1  TGATACTCTTATAATTACAATTTCTAATTTGAAAGACAGTTAAGAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTCTTATAATTACAATTTCTAATTTGAAAGACAGTTAAGAAATAG  150

seq1  ATAACCATTTATTTTAAAACATTTATCAACTGTGTAATGGCTGTATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATTTATTTTAAAACATTTATCAACTGTGTAATGGCTGTATTTAA  200

seq1  ATGATCTCGAATGTAAACAGACACCAGACCCATCAAAAACAGCACCAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTCGAATGTAAACAGACACCAGACCCATCAAAAACAGCACCAAGC  250

seq1  ACCTTTTGGACACAGAATTTTTATGACATACATGTCAAATTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTGGACACAGAATTTTTATGACATACATGTCAAATTTTTTTTTTT  300

seq1  CCAGAACCATCAATAACAGTTACAAAACCTAATCTTTTTTTTCTTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCATCAATAACAGTTACAAAACCTAATCTTTTTTTTCTTTTAAA  350

seq1  GTGGAACCTAAAAGAGCATAGAGTTTTGCTTCTCTTCTGGGTTTGTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACCTAAAAGAGCATAGAGTTTTGCTTCTCTTCTGGGTTTGTAGTC  400

seq1  CTACCCACCAGGAGGCAGTGAGACTGGGAGTTGTCAGTGTTCCTTCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACCAGGAGGCAGTGAGACTGGGAGTTGTCAGTGTTCCTTCCCCT  450

seq1  CCCACCAAGTTCTGCTCCCTGTTGACATGCACTCAGTCCTGTGGCCGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAAGTTCTGCTCCCTGTTGACATGCACTCAGTCCTGTGGCCGTCA  500

seq1  TGCTGGCAGCGGGCACCCTCTGGCGCCCTGAGCAGCACGTTAGTAAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCAGCGGGCACCCTCTGGCGCCCTGAGCAGCACGTTAGTAAGTAG  550

seq1  TTAGAGCTTGTATTCTCAGTTGAGAAGTTTCTAGTCTTGCTTCATAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCTTGTATTCTCAGTTGAGAAGTTTCTAGTCTTGCTTCATAGTAA  600

seq1  TCTTAACATATCTGTGGACCCAGGCTTGACAGCTAGCTACTATGTGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACATATCTGTGGACCCAGGCTTGACAGCTAGCTACTATGTGATGT  650

seq1  CTTTGCTGACCCTGATGCTCTGCGTGACCATTTCTGTAGCTTCCTGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGACCCTGATGCTCTGCGTGACCATTTCTGTAGCTTCCTGGCCC  700

seq1  CGCCTATATATTCCTGGGCCAGGCAAGACAGAAATGGAGTATAGCTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTATATATTCCTGGGCCAGGCAAGACAGAAATGGAGTATAGCTGCTT  750

seq1  CCAGTCCAGAATGAAAAGCAATCTTCTCCTTCCTGCCTGCAGGGAATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCAGAATGAAAAGCAATCTTCTCCTTCCTGCCTGCAGGGAATGTG  800

seq1  AGTAAAACCCTCTCTGCCTGTTCCTGGGAAAACTGTGCCTATTCTAAGCC  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTAAAACCCTCTCTGCCTG-TCCTGGGAAAACTGTGCCTATTCTAAGCC  849

seq1  TTGGAGAAAATTCCAATTCAAAATGTTCGTGTGTGATAGCTAACTAGTGT  900
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  TTGGAGAAAATTCCAA-TCAAAATGTTCGTGTGTGAAAGCTAACTAGTGT  898

seq1  CATTTAAACTGCATTGGTGGGAACAGATGGTAGCGCCTGGCTCAGACTGG  950
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CA-TTAAACTGCATTGGTGGGAACAGATGGTAGCGCCTGGCTCAGACT-G  946

seq1  AGTGCTTTCACTTAACTCTGACTCCAGTCACTGTGGTGGCAGGGTTCCTC  1000
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  AGTGCTTTCACTT-ACTCTGACTCCAGTCACTGTGGT-GCAGGGTTCCTC  994

seq1  CCACACCTTCCCAACAAAGGTGAATTAACCTCCATCTGCACACTGGGCTA  1050
      ||||| |||||||   |||||||  | |||||||||||| | ||||||||
seq2  CCACA-CTTCCCA--CAAGGTGA--TTACCTCCATCTGC-CCCTGGGCTA  1038

seq1  AGGGACTGAACATAGTAAATCAGGCTCACCTTCTCTGGAGAAAGCTGCCA  1100
      ||||| |||||| ||| ||||| |||||||||||||   || ||||| ||
seq2  AGGGA-TGAACA-AGT-AATCA-GCTCACCTTCTCT---GAGAGCTG-CA  1080

seq1  AGGGTTATATTTAATCTGGAGCCTTTTAAAAGCTGTTTT  1139
      |||  |||||||||  |||||||||   ||| |||||||
seq2  AGG--TATATTTAAATTGGAGCCTT---AAAACTGTTTT  1114