BAC Information

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BAC

Clone NameB6Ng01-066I20
Chromosome11 (Build37)
Map Location 107,136,491 - 107,268,845
singlet/doubletdoublet
Overlap genePitpnc1
Upstream geneTcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
Downstream genePsmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066I20.bB6Ng01-066I20.g
ACCDH885700DH885701
length1,08573
definitionDH885700|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I20, 5' end.DH885701|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,267,749 - 107,268,845)(107,136,491 - 107,136,563)
sequence
gaattcaaaaggaaaagctggccgggtggcaacatttatcccctgttgtt
cccccacacattcccacccctcattcacctgttctcaggtgcactgagat
gtaagcaagttgtgccacacactcctgctgtcacagctaggagctgatca
gccagcttgccccccccatccccccccccccaatggtaactttgtgtccc
ttcagtgagcctgaagaaatccttgctttttgtttgatgtttagcaggtg
actaggagaacctgtaagacactgagtgactggccggtcctcagttgttt
aataccagaaaccactgatacgttgactcctgaaactatgaaagtcaagt
ctttctcccctgaaccaacaatgttctttctacccattcctaagaagtaa
tacacttggccagttgggtttgtttttttcgtcttttgctgtgtttaccc
ctcggtgagatgcaaatggatgaaataaagaaggaacagaaggaaagaaa
cccctagctctccatgactaagagcttgtagcaagcagagcttgggtgag
agccattggctcattacatactccgtggtcctaggtgtgggagtttttat
cccgcctgcatcttccctcccctctcctctgcatcagcaggagctctgca
aatatttctagaaagaagggatgagtaggaatattttaggcactgtggcc
aagagaaggtagcgatgtcgtcgtgtaggatgagataaagcaagtgtttc
tttttttctttctttttatttacatctatctgtgtaccacatgcgtgcct
ggtgcccatgcagtccagaagaggacgttggatcccttagaactggttgc
gtgctgctctgtggtgctggaaccaaatccaggccctctagaaaccagcc
agtcctcttatgttcttatgataaaattcaaactatagtcatcttggata
ctatttcttgggtcaccaaggaaaggaatgaatctttttgggggagaggg
cattttactggactgcagtcgagagtcagtttgtccagtcaccatgacag
aatgtgcgtcatttttcttgcacaagttctttgga
tacagaggcaggtagtacaggaagtgctacatggcaagaggcagggtgtt
tgtgtgtgtgtgtttgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107267749_107268845
seq2: B6Ng01-066I20.b_45_1129 (reverse)

seq1  TCCAAAGAACTTGTGCAGGAAAAATGACGCCACATTTCTGTCATGGTGAC  50
      ||||||||||||||||| ||||||||||| |||| |||||||||||||||
seq2  TCCAAAGAACTTGTGCAAGAAAAATGACG-CACA-TTCTGTCATGGTGAC  48

seq1  TGGACAGACTGACTCTCGGCTTGCAGTTCAGTAAAATGCCTCTCTCCCCC  100
      |||||| ||||||||||| | |||||| |||||||||||| |||||||||
seq2  TGGACAAACTGACTCTCGAC-TGCAGTCCAGTAAAATGCC-CTCTCCCCC  96

seq1  AAAAAGAATTCCATTCCTTTCCTTGGTGGACCCAAGAAATAGTATCCAAG  150
      |||||||  | |||||||||||||||| ||||||||||||||||||||||
seq2  AAAAAGA--TTCATTCCTTTCCTTGGT-GACCCAAGAAATAGTATCCAAG  143

seq1  ATGACTATAGTTTGAATTTTATCAATAAGAACATTAAGAGGACTGGCTGG  200
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  ATGACTATAGTTTGAATTTTATC-ATAAGAACA-TAAGAGGACTGGCTGG  191

seq1  TTTTCTAGAGGGCCTGGATTTGGTTTCCAGCACCCACAGAGCAGCACGCA  250
       |||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  -TTTCTAGAGGGCCTGGATTTGG-TTCCAGCA-CCACAGAGCAGCACGCA  238

seq1  ACCAGTTCTAAGGGATCCAACGTCCTCTTCTGGACTGCATGGGCACCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTCTAAGGGATCCAACGTCCTCTTCTGGACTGCATGGGCACCAGG  288

seq1  CACGCATGTGGTACACAGATAGATGTAAATAAAAAGAAAGAAAAAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCATGTGGTACACAGATAGATGTAAATAAAAAGAAAGAAAAAAAGAA  338

seq1  ACACTTGCTTTATCTCATCCTACACGACGACATCGCTACCTTCTCTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCTTTATCTCATCCTACACGACGACATCGCTACCTTCTCTTGGC  388

seq1  CACAGTGCCTAAAATATTCCTACTCATCCCTTCTTTCTAGAAATATTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCCTAAAATATTCCTACTCATCCCTTCTTTCTAGAAATATTTGC  438

seq1  AGAGCTCCTGCTGATGCAGAGGAGAGGGGAGGGAAGATGCAGGCGGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCTGCTGATGCAGAGGAGAGGGGAGGGAAGATGCAGGCGGGATA  488

seq1  AAAACTCCCACACCTAGGACCACGGAGTATGTAATGAGCCAATGGCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCCACACCTAGGACCACGGAGTATGTAATGAGCCAATGGCTCTC  538

seq1  ACCCAAGCTCTGCTTGCTACAAGCTCTTAGTCATGGAGAGCTAGGGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGCTCTGCTTGCTACAAGCTCTTAGTCATGGAGAGCTAGGGGTTT  588

seq1  CTTTCCTTCTGTTCCTTCTTTATTTCATCCATTTGCATCTCACCGAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTCTGTTCCTTCTTTATTTCATCCATTTGCATCTCACCGAGGGG  638

seq1  TAAACACAGCAAAAGACGAAAAAAACAAACCCAACTGGCCAAGTGTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAGCAAAAGACGAAAAAAACAAACCCAACTGGCCAAGTGTATTA  688

seq1  CTTCTTAGGAATGGGTAGAAAGAACATTGTTGGTTCAGGGGAGAAAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGGAATGGGTAGAAAGAACATTGTTGGTTCAGGGGAGAAAGACT  738

seq1  TGACTTTCATAGTTTCAGGAGTCAACGTATCAGTGGTTTCTGGTATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCATAGTTTCAGGAGTCAACGTATCAGTGGTTTCTGGTATTAAA  788

seq1  CAACTGAGGACCGGCCAGTCACTCAGTGTCTTACAGGTTCTCCTAGTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGGACCGGCCAGTCACTCAGTGTCTTACAGGTTCTCCTAGTCAC  838

seq1  CTGCTAAACATCAAACAAAAAGCAAGGATTTCTTCAGGCTCACTGAAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAACATCAAACAAAAAGCAAGGATTTCTTCAGGCTCACTGAAGGG  888

seq1  ACACAAAGTTACCATTGGGGGGGGGGGGATGGGGGGGGCAAGCTGGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGTTACCATTGGGGGGGGGGGGATGGGGGGGGCAAGCTGGCTGA  938

seq1  TCAGCTCCTAGCTGTGACAGCAGGAGTGTGTGGCACAACTTGCTTACATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTAGCTGTGACAGCAGGAGTGTGTGGCACAACTTGCTTACATC  988

seq1  TCAGTGCACCTGAGAACAGGTGAATGAGGGGTGGGAATGTGTGGGGGAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCACCTGAGAACAGGTGAATGAGGGGTGGGAATGTGTGGGGGAAC  1038

seq1  AACAGGGGATAAATGTTGCCACCCGGCCAGCTTTTCCTTTTGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGGATAAATGTTGCCACCCGGCCAGCTTTTCCTTTTGAATTC  1085

seq1: chr11_107136491_107136563
seq2: B6Ng01-066I20.g_76_148

seq1  TACAGAGGCAGGTAGTACAGGAAGTGCTACATGGCAAGAGGCAGGGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TACAGAGGCAGGTAGTACAGGAAGTGCTACATGGCAAGAGGCAGGGTGTT  50

seq1  TGTGTGTGTGTGTTTGGGGGGGG  73
      |||||||||||||||||||||||
seq2  TGTGTGTGTGTGTTTGGGGGGGG  73