BAC Information

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BAC

Clone NameB6Ng01-066M08
Chromosome11 (Build37)
Map Location 83,170,220 - 83,219,241
singlet/doubletdoublet
Overlap geneAp2b1
Upstream geneTmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12
Downstream geneRasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066M08.bB6Ng01-066M08.g
ACCDH885855DH885856
length1,1151,162
definitionDH885855|Mus musculus domesticus DNA, BAC clone: B6Ng01-066M08, 5' end.DH885856|Mus musculus domesticus DNA, BAC clone: B6Ng01-066M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,170,220 - 83,171,339)(83,218,060 - 83,219,241)
sequence
gaattccctaaaatccaagctgccgtaggtgttcttaatctgattacttg
aggcaggaagtaaacccaccccacctctggcccacactatctggtgctag
cccagttaaagaaacaaagaagatggagggaaagcaaagaaattccgctt
ttcgtctgcttgccctcacacttgctgccatgttcatccattctgttggt
attgagtcctacttcttcaagattccagtgtagactgaaaacaagcccct
ctccaggaatcctgtaggactctggagccagtttgggactgcatagacaa
cacttagggtgaggtggcacagtatgcagcaagagttcatggtggaccaa
gtccactctcttcgtgcctgggaagtaaagcgtgaggagggtcacaggga
ccctttcgtcgtggccaggatgattccccttgagcttctgctgcttccca
cgccaccacaacctttgtctggaccagacctttaacacgccgactgtttg
caaacacttacccaaactatagcaggcaatttagaaaaaatttaccaatt
ttttactgttaacccttgtgctaggacttgtacagtttttaatcctcaca
gtttatcaccatcttgtgattcctctgtttgtttgtaatgaccattttct
agaatagagtttaaatgttttcctctcaggatccccttccacccaataaa
tttttatgcaaccctcaatatatattcatgtgaaataagtataaaaatca
accatttcctgacagcaagtcagactatacagagaaaccctgtctcgaac
actacccccccaaataaataaataaaatgatttatttatttttatgtgtt
acatgtatggtttgcttgcatgaatgtaagtgcagtgttgtacatacctg
cagaggccagaagagggctctggatccctaagatatagatggttataagc
atacatacaatgctgggatccaaacctgaatcctctcaaagtacaacaaa
tattcttaactgcttgcactctctagctcagatttcaccgtttcttaatg
atcaaagcaaattcgcatgataatagatggatattgtttattttgcataa
atgaatactcttggt
gaattccagcagagagccaagagtggcctagggcggttcattctgagtct
agacaccagaagcatcaactacagcccaagtgctgtagaccccccaaact
cttctctatacttgagatgtgcaaggacttgcccaagggcttgatgttcc
tctatgctcttcccctaggtgcaggcggtgggagacatcagtcctgttac
tgagcaaaccacacaggtgccccaaacaatacaagtagttatagactcct
tgggatgctttctttaaggcagtggctatcctgtttgcttgggaacacgc
aggccctgggttcaaagggcttttggactagagtgcacaggtaccgagta
gcagcttagctatgcttctgtccttggttgtgctggcagatactgacaac
cccgggggacctgaagggcactgccattctacctagtgtcctgggaactg
cccagagtgactctccccatgcacaccttcctgaagttatgggacttgag
acctgaacaacaggtggcttcctgatataaatactttttttctgaattct
aatttcaactggctgaaccccttgggagggctagggccatttacaaaaaa
aaaaaaaaaaaaaaaaaaagaataagaataagaatggttactaaggtcct
ttctctagccagctatgtattgtcctgggaacaaagtccataccacaaac
tttattttgtgtaaatgagtttattgatgagtacacaaggtaaaggctcc
ccaaaccccaccctccccaacaacagatcccaacaagaacagcaaagtaa
gccttcttgggacagcattggctccagcatcccaagcttacaatacggac
caggcttggctggggacaaacacctggggaatctgaccagaaagagctct
ggtgtgtttgttccctgccctctgcacttcagctttcgacagacgcacac
tttggctagaagagtggatacaggttaactgagtcagttcttccaatccg
gtcagcttggcatgagctgaacagaagcttcaggcaggcaacgtctcttg
aggaaggttcttgcatcttcctaattcttccctggagttgaacgcatgat
cactgagccagcgagaaccaagctgtcctgtactgggtgagctggagagc
ctcagtttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83170220_83171339
seq2: B6Ng01-066M08.b_47_1161

seq1  GAATTCCCTAAAATCCAAGCTGCCGTAGGTGTTCTTAATCTGATTACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAAATCCAAGCTGCCGTAGGTGTTCTTAATCTGATTACTTG  50

seq1  AGGCAGGAAGTAAACCCACCCCACCTCTGGCCCACACTATCTGGTGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAAGTAAACCCACCCCACCTCTGGCCCACACTATCTGGTGCTAG  100

seq1  CCCAGTTAAAGAAACAAAGAAGATGGAGGGAAAGCAAAGAAATTCCGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTAAAGAAACAAAGAAGATGGAGGGAAAGCAAAGAAATTCCGCTT  150

seq1  TTCGTCTGCTTGCCCTCACACTTGCTGCCATGTTCATCCATTCTGTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCTGCTTGCCCTCACACTTGCTGCCATGTTCATCCATTCTGTTGGT  200

seq1  ATTGAGTCCTACTTCTTCAAGATTCCAGTGTAGACTGAAAACAAGCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTCCTACTTCTTCAAGATTCCAGTGTAGACTGAAAACAAGCCCCT  250

seq1  CTCCAGGAATCCTGTAGGACTCTGGAGCCAGTTTGGGACTGCATAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGAATCCTGTAGGACTCTGGAGCCAGTTTGGGACTGCATAGACAA  300

seq1  CACTTAGGGTGAGGTGGCACAGTATGCAGCAAGAGTTCATGGTGGACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGGGTGAGGTGGCACAGTATGCAGCAAGAGTTCATGGTGGACCAA  350

seq1  GTCCACTCTCTTCGTGCCTGGGAAGTAAAGCGTGAGGAGGGTCACAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTCTCTTCGTGCCTGGGAAGTAAAGCGTGAGGAGGGTCACAGGGA  400

seq1  CCCTTTCGTCGTGGCCAGGATGATTCCCCTTGAGCTTCTGCTGCTTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCGTCGTGGCCAGGATGATTCCCCTTGAGCTTCTGCTGCTTCCCA  450

seq1  CGCCACCACAACCTTTGTCTGGACCAGACCTTTAACACGCCGACTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCACAACCTTTGTCTGGACCAGACCTTTAACACGCCGACTGTTTG  500

seq1  CAAACACTTACCCAAACTATAGCAGGCAATTTAGAAAAAATTTACCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTTACCCAAACTATAGCAGGCAATTTAGAAAAAATTTACCAATT  550

seq1  TTTTACTGTTAACCCTTGTGCTAGGACTTGTACAGTTTTTAATCCTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGTTAACCCTTGTGCTAGGACTTGTACAGTTTTTAATCCTCACA  600

seq1  GTTTATCACCATCTTGTGATTCCTCTGTTTGTTTGTAATGACCATTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCACCATCTTGTGATTCCTCTGTTTGTTTGTAATGACCATTTTCT  650

seq1  AGAATAGAGTTTAAATGTTTTCCTCTCAGGATCCCCTTCCACCCAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAGTTTAAATGTTTTCCTCTCAGGATCCCCTTCCACCCAATAAA  700

seq1  TTTTTATGCAACCCTCAATATATATTCATGTGAAATAAGTATAAAAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGCAACCCTCAATATATATTCATGTGAAATAAGTATAAAAATCA  750

seq1  ACCATTTCCTGACAGCAAGTCAGACTATACAGAGAAACCCTGTCTCGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCCTGACAGCAAGTCAGACTATACAGAGAAACCCTGTCTCGAAC  800

seq1  ACTACCCCCCCAAATAAATAAATAAAATGATTTATTTATTTTTATGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCCCCAAATAAATAAATAAAATGATTTATTTATTTTTATGTGTT  850

seq1  ACATGTATGGTTTGCTTGCATGAATGTAAGTGCAGTGTTGTACATACCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGGTTTGCTTGCATGAATGTAAGTGCAGTGTTGTACATACCTG  900

seq1  CAGAGGCCAGAAGAGGGCTCTGGATCCCCTAAGATATAGATGGTTATAAG  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGAGGCCAGAAGAGGGCTCTGGAT-CCCTAAGATATAGATGGTTATAAG  949

seq1  CATACATACAAATGCTGGGATCCAAACCTGAATCCTCTCAAAGTACAACA  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAC-AATGCTGGGATCCAAACCTGAATCCTCTCAAAGTACAACA  998

seq1  AATATTCTTAACTGCTTGCACCTCTCTAGCTCAGATTTCACCGTTTCTTA  1050
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATATTCTTAACTGCTTGCA-CTCTCTAGCTCAGATTTCACCGTTTCTTA  1047

seq1  ATGATCAAAGCAAATTCGCATGATAATTAGATGGATATTGTTTATTTTTG  1100
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  ATGATCAAAGCAAATTCGCATGATAA-TAGATGGATATTGTTTA-TTTTG  1095

seq1  CATAAAATGATACTCTTGGT  1120
      ||||||   |||||||||||
seq2  CATAAATGAATACTCTTGGT  1115

seq1: chr11_83218060_83219241
seq2: B6Ng01-066M08.g_69_1230 (reverse)

seq1  CCAGAAACTGAGGCCTCTCTCAGCCTCA-CCAGTGACAGAGAACAGCTGT  49
      ||||||||||||| ||||| ||| |||| |||||   | || |||||| |
seq2  CCAGAAACTGAGG-CTCTC-CAG-CTCACCCAGT---ACAGGACAGCT-T  43

seq1  GGTTCTCTGCTGGCCTCAGCTGATCCATGCTGTCTGACTCCCGGGGAGAG  99
      ||||||| ||||| ||||| |||| ||||| ||   ||||| ||| ||| 
seq2  GGTTCTC-GCTGG-CTCAG-TGAT-CATGC-GTTCAACTCCAGGGAAGAA  88

seq1  TTAGGAAGATGCAAGGACCTCTCCTCAAGAGACTGTTGCCTGCCTGAAGC  149
      ||||||||||||||| |||| |||||||||||| ||||||||||||||||
seq2  TTAGGAAGATGCAAGAACCT-TCCTCAAGAGAC-GTTGCCTGCCTGAAGC  136

seq1  TTCTGTTCAGGCTCATGCCAAGCTTGACCGGATTGGGAGAACTGGACTCA  199
      ||||||||| ||||||||||||| |||||||||||| |||||| ||||||
seq2  TTCTGTTCA-GCTCATGCCAAGC-TGACCGGATTGGAAGAACT-GACTCA  183

seq1  GTTTAACCTGTATCCACTCTCCTTAGCCAAAGTGTGCGTCTGTCGAAAGC  249
      | |||||||||||||||||| | |||||||||||||||||||||||||||
seq2  G-TTAACCTGTATCCACTCTTC-TAGCCAAAGTGTGCGTCTGTCGAAAGC  231

seq1  TGAAGTGCAGAGGGCAGGGAAGCAAACACACCAGAGCTCTTTCTGGTCAG  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGAAGTGCAGAGGGCAGGGAA-CAAACACACCAGAGCTCTTTCTGGTCAG  280

seq1  ATTCCCCAGGTGTTTGTCCCCAGCCAAGCCTGGTCCGTATTGTGAAGCTT  349
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTCCCCAGGTGTTTGTCCCCAGCCAAGCCTGGTCCGTATTGT-AAGCTT  329

seq1  GGGATGCTGGAGCCAATGCTGTCCCAAGAAGGCTTACTTTGCTGTTCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTGGAGCCAATGCTGTCCCAAGAAGGCTTACTTTGCTGTTCTTG  379

seq1  TTGGGATCTGTTGTTGGGGAGGGTGGGGTTTGGGGAGCCTTTACCTTGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATCTGTTGTTGGGGAGGGTGGGGTTTGGGGAGCCTTTACCTTGTG  429

seq1  TACTCATCAATAAACTCATTTACACAAAATAAAGTTTGTGGTATGGACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATCAATAAACTCATTTACACAAAATAAAGTTTGTGGTATGGACTT  479

seq1  TGTTCCCAGGACAATACATAGCTGGCTAGAGAAAGGACCTTAGTAACCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGGACAATACATAGCTGGCTAGAGAAAGGACCTTAGTAACCAT  529

seq1  TCTTATTCTTATTCTTTTTTTTTTTTTTTTTTTTTTTTTGTAAATGGCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCTTATTCTTTTTTTTTTTTTTTTTTTTTTTTTGTAAATGGCCC  579

seq1  TAGCCCTCCCAAGGGGTTCAGCCAGTTGAAATTAGAATTCAGAAAAAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTCCCAAGGGGTTCAGCCAGTTGAAATTAGAATTCAGAAAAAAAG  629

seq1  TATTTATATCAGGAAGCCACCTGTTGTTCAGGTCTCAAGTCCCATAACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATCAGGAAGCCACCTGTTGTTCAGGTCTCAAGTCCCATAACTT  679

seq1  CAGGAAGGTGTGCATGGGGAGAGTCACTCTGGGCAGTTCCCAGGACACTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTGTGCATGGGGAGAGTCACTCTGGGCAGTTCCCAGGACACTA  729

seq1  GGTAGAATGGCAGTGCCCTTCAGGTCCCCCGGGGTTGTCAGTATCTGCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATGGCAGTGCCCTTCAGGTCCCCCGGGGTTGTCAGTATCTGCCA  779

seq1  GCACAACCAAGGACAGAAGCATAGCTAAGCTGCTACTCGGTACCTGTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAACCAAGGACAGAAGCATAGCTAAGCTGCTACTCGGTACCTGTGCA  829

seq1  CTCTAGTCCAAAAGCCCTTTGAACCCAGGGCCTGCGTGTTCCCAAGCAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTCCAAAAGCCCTTTGAACCCAGGGCCTGCGTGTTCCCAAGCAAA  879

seq1  CAGGATAGCCACTGCCTTAAAGAAAGCATCCCAAGGAGTCTATAACTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGCCACTGCCTTAAAGAAAGCATCCCAAGGAGTCTATAACTACT  929

seq1  TGTATTGTTTGGGGCACCTGTGTGGTTTGCTCAGTAACAGGACTGATGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTTTGGGGCACCTGTGTGGTTTGCTCAGTAACAGGACTGATGTC  979

seq1  TCCCACCGCCTGCACCTAGGGGAAGAGCATAGAGGAACATCAAGCCCTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCGCCTGCACCTAGGGGAAGAGCATAGAGGAACATCAAGCCCTTG  1029

seq1  GGCAAGTCCTTGCACATCTCAAGTATAGAGAAGAGTTTGGGGGGTCTACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTCCTTGCACATCTCAAGTATAGAGAAGAGTTTGGGGGGTCTACA  1079

seq1  GCACTTGGGCTGTAGTTGATGCTTCTGGTGTCTAGACTCAGAATGAACCG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGCTGTAGTTGATGCTTCTGGTGTCTAGACTCAGAATGAACCG  1129

seq1  CCCTAGGCCACTCTTGGCTCTCTGCTGGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  CCCTAGGCCACTCTTGGCTCTCTGCTGGAATTC  1162