BAC Information

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BAC

Clone NameB6Ng01-067G11
Chromosome6 (Build37)11 (Build37)
Map Location 85,609,805 - 85,610,33648,963,678 - 48,964,849
singlet/doubletsingletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067G11.bB6Ng01-067G11.g
ACCDH886304DH886305
length8851,159
definitionDH886304|Mus musculus domesticus DNA, BAC clone: B6Ng01-067G11, 5' end.DH886305|Mus musculus domesticus DNA, BAC clone: B6Ng01-067G11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,609,805 - 85,610,336)(48,963,678 - 48,964,849)
sequence
gaattcctgatctttccaagacttttatcatgaatgggcgttggattttg
ttgaatgctttctccgagtctaacgagatgatcatgtggttttgtctttg
agtttgtttatataatgaattacattgatggatttccatgtattgaatca
tccctgcatccctgggatgaaacctacttggtcgggatggatgactgctt
tgatgtgttcttggattcgggtagcaagaactttattgaggatttttgca
tcgatattcataagggaaaatggtctgaagttctctatctttgttgggtc
tctttgtggtttaggtatcagagtaattgtggcttcatagaatgagttgg
gtagagtactttctgcttctattttgtggaatagtttgtgaagaactggg
attagatcttctttgaaggtctgatagaactctgcactaaacccatgtgg
ttctgggctttttctggttgggagactattaatgactgcttctatttctt
taggggatataggactgtttagatcattaacctgatcttgatttaacctt
ggtccctggtatctgtctagaaacttgtccatttcttccaggttctccag
ttttgttgattataaccttttgtagaaggatgatggtgttttggatttct
tcagatctgttgttatgtcttcctttttcatttctgattttgttaattag
gatgctttccctgtgctctctagcgagtctggctaagggtttgtctatct
tgttgattttctcaaagaaccaactcctccttggttgattctttgaattg
ttcttcttgtttccacttggttgattttcgcctctgagtttgattattcc
tgctgtctactcctcttgggttatttgcttccttt
gaattcactaaggtgaatcaactaagacctcactgggaaaaaacaaaaca
aaacagtcagtgaatgaataagctatgcccactggcaaaagatggcatta
cacagggaagcgaggtttgcaatgccaggagaaaggatcaaatttatgtt
ttggtctttttccatctttgatgtagtacctgggattggatctcggaatc
cctctgtgctagacaagtgttgtaccactgtgctatattcttagctggat
taaaattcctctacaattaatgggctagtacaacaggttggaatctggaa
gaatctcagatataagcatcttttgttaaaactttttctttggataaagg
gtcctactatacagtccaagctggcctgcaacttgcagccattctatctt
tgtctcctgataaatttaaatactctcctcagagatattttgctaattga
tagaaaaaaagtgaagctagaaaaaaaaaaaagaaaaagaaaaaaagaaa
aagggaaagttctctcaattgcattttagtcaggccccactggaggtgca
tacagaactaatcacatgctaccagaggtggactccaaccccttagactt
gaaaaatacaatggctgaaatgctgggttatggtgtgaaataagagccat
cttgaaaatagagggaaaatgtcagcaatctaaggtgggaaccaataagt
cttatcctacttgcagctccaatcctactatgctcaaacaaataccctaa
gtgagcattgcaataaaagaaatcaaaggttgtagcgaagggccgatatc
tcattctaatcaaagggaaactaaaagttaacagattaacagttcagttt
gaagaatggcattcgccctcaaaacaaaatgactagaacaaaaattgtct
ggtttattcttcatatgattttattcaaagttgcacaacaaagaaaacat
tcagagaaacagtccagcagactaacagatctcttaatttaaaatcgatc
atgttttacatctcatactttttaatgattgtaagactatgagactgctt
gacattatgaagatcttcactgtgtttgaggagggaattgagctctagaa
taaatgactcctagacctggagaaatccatgcctgaatgctggttatggt
ggaaataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85609805_85610336
seq2: B6Ng01-067G11.b_404_932 (reverse)

seq1  AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAAC  50
      |||||||||||| | ||||||||||||||||| ||||| |||||||||||
seq2  AAAGGAAGCAAA-TAACCCAAGAGGAGTAGACAGCAGG-AATAATCAAAC  48

seq1  TCAGGGACG-AAATCAACCAAGTGGAAAC---AAGAACTATTCAAAGAAT  96
      |||| | || |||||||||||||||||||   |||||| |||||||||||
seq2  TCAGAGGCGAAAATCAACCAAGTGGAAACAAGAAGAACAATTCAAAGAAT  98

seq1  CAACCAATCGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATAAAC  146
      |||||||  |||||| ||||||||||||||||||||||||||||| ||||
seq2  CAACCAA-GGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGACAAAC  147

seq1  CCTTAGCTAGACTCACTAGAGGGCACAGGGAAAGCATCCTAATTAACAAA  196
      ||||||| |||||| |||||| ||||||||||||||||||||||||||||
seq2  CCTTAGCCAGACTCGCTAGAGAGCACAGGGAAAGCATCCTAATTAACAAA  197

seq1  ATCAGAAATG-AAAAGGGAGATATAACAACAGATCCTGAAGAAATCCAAA  245
      |||||||||| |||||| ||| |||||||||||| |||||||||||||||
seq2  ATCAGAAATGAAAAAGGAAGACATAACAACAGAT-CTGAAGAAATCCAAA  246

seq1  ACACCATCAGATCCTTCTACAAAAGGCTATACTCATCAAAACTGGAGAAC  295
      ||||||||  |||||||||||||||| |||| ||| ||||||||||||||
seq2  ACACCATC--ATCCTTCTACAAAAGGTTATAATCAACAAAACTGGAGAAC  294

seq1  CTGGATGAAATGGACACGTTTCTAGACAGATACCAGGTACCAAAGTTAAA  345
      ||||| |||||||||| |||||||||||||||||||| ||||| ||||||
seq2  CTGGAAGAAATGGACAAGTTTCTAGACAGATACCAGGGACCAAGGTTAAA  344

seq1  TCAAGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAG  394

seq1  AAGCAGTCATTAATAGTCTCCCAACCAAAAAAAAAGCCCAGGACCAAATG  445
      ||||||||||||||||||||||||||  | ||||||||||| |||| |||
seq2  AAGCAGTCATTAATAGTCTCCCAACC--AGAAAAAGCCCAGAACCACATG  442

seq1  GGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTT  492

seq1  CTTCACAAACTATTCCACAAAATAGAAACAGAAGGTA  532
      ||||||||||||||||||||||||||| ||||| |||
seq2  CTTCACAAACTATTCCACAAAATAGAAGCAGAAAGTA  529

seq1: chr11_48963678_48964849
seq2: B6Ng01-067G11.g_68_1226 (reverse)

seq1  CTTATTTCACACCATAACCCAGCATTTCAGCCATTGTATTTCT-CAAGTC  49
      |||||||| |||||||| |||||| ||||| || || |||||| || |||
seq2  CTTATTTC-CACCATAA-CCAGCA-TTCAGGCA-TGGATTTCTCCAGGTC  46

seq1  TA-GAGTCATTTTATTCTTAGGGCTTCCATTTCTCT-CTCAAACACAGTT  97
      || |||||| ||||||| ||| |||  || ||| || ||||||||||| |
seq2  TAGGAGTCA-TTTATTC-TAGAGCT--CAATTCCCTCCTCAAACACAG-T  91

seq1  GAAGATCTCCATATGTTCAAGCAGTCTCATAGTCTTTACATTCATTAAAA  147
      |||||||| ||||   |||||||||||||||||| ||||| |||||||||
seq2  GAAGATCTTCATAATGTCAAGCAGTCTCATAGTC-TTACAATCATTAAAA  140

seq1  ATGTATGAGATGTAAAACCATGATCGATTTTTAAATTTAAGAGATCTGTT  197
      | ||||||||||||||| |||||||||||||  || ||||||||||||||
seq2  A-GTATGAGATGTAAAA-CATGATCGATTTT--AAATTAAGAGATCTGTT  186

seq1  AGTCTGGCTGGACTGTTTCTCTGGATGTTTTCTTTGTTGTGC-ACTTTGA  246
      ||||| ||||||||||||||||| |||||||||||||||||| |||||||
seq2  AGTCT-GCTGGACTGTTTCTCTGAATGTTTTCTTTGTTGTGCAACTTTGA  235

seq1  ATAAAAATCATATTGAAGAATAAACCAGACAATTTTTGTTCTAGTCATTT  296
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AT-AAAATCATA-TGAAGAATAAACCAGACAATTTTTGTTCTAGTCATTT  283

seq1  TGTTTTGAGGGCGAATGCCATTCTTCAAACTG-ACTGTTAATCTGTTAAC  345
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTTTGAGGGCGAATGCCATTCTTCAAACTGAACTGTTAATCTGTTAAC  333

seq1  TTTTAGTTTCCCTTTGATTTAGAATGAGATATCGGCCCTTCGCTACAACC  395
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTCCCTTTGA-TTAGAATGAGATATCGGCCCTTCGCTACAACC  382

seq1  TTTGATTTCTTTTATTGCAATGCTCACTTAGGGTATTTGTTTGAGCATAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTCTTTTATTGCAATGCTCACTTAGGGTATTTGTTTGAGCATAG  432

seq1  TAGGATTGGAGCTGCAAGTAGGATAAGACTTATTGGTTCCCACCTTAGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTGGAGCTGCAAGTAGGATAAGACTTATTGGTTCCCACCTTAGAT  482

seq1  TGCTGACATTTTCCCTCTATTTTCAAGATGGCTCTTATTTCACACCATAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACATTTTCCCTCTATTTTCAAGATGGCTCTTATTTCACACCATAA  532

seq1  CCCAGCATTTCAGCCATTGTATTTTTCAAGTCTAAGGGGTTGGAGTCCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATTTCAGCCATTGTATTTTTCAAGTCTAAGGGGTTGGAGTCCAC  582

seq1  CTCTGGTAGCATGTGATTAGTTCTGTATGCACCTCCAGTGGGGCCTGACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTAGCATGTGATTAGTTCTGTATGCACCTCCAGTGGGGCCTGACT  632

seq1  AAAATGCAATTGAGAGAACTTTCCCTTTTTCTTTTTTTCTTTTTCTTTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAATTGAGAGAACTTTCCCTTTTTCTTTTTTTCTTTTTCTTTTT  682

seq1  TTTTTTTCTAGCTTCACTTTTTTTCTATCAATTAGCAAAATATCTCTGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTAGCTTCACTTTTTTTCTATCAATTAGCAAAATATCTCTGAG  732

seq1  GAGAGTATTTAAATTTATCAGGAGACAAAGATAGAATGGCTGCAAGTTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTATTTAAATTTATCAGGAGACAAAGATAGAATGGCTGCAAGTTGC  782

seq1  AGGCCAGCTTGGACTGTATAGTAGGACCCTTTATCCAAAGAAAAAGTTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCTTGGACTGTATAGTAGGACCCTTTATCCAAAGAAAAAGTTTT  832

seq1  AACAAAAGATGCTTATATCTGAGATTCTTCCAGATTCCAACCTGTTGTAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGATGCTTATATCTGAGATTCTTCCAGATTCCAACCTGTTGTAC  882

seq1  TAGCCCATTAATTGTAGAGGAATTTTAATCCAGCTAAGAATATAGCACAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCATTAATTGTAGAGGAATTTTAATCCAGCTAAGAATATAGCACAG  932

seq1  TGGTACAACACTTGTCTAGCACAGAGGGATTCCGAGATCCAATCCCAGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAACACTTGTCTAGCACAGAGGGATTCCGAGATCCAATCCCAGGT  982

seq1  ACTACATCAAAGATGGAAAAAGACCAAAACATAAATTTGATCCTTTCTCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCAAAGATGGAAAAAGACCAAAACATAAATTTGATCCTTTCTCC  1032

seq1  TGGCATTGCAAACCTCGCTTCCCTGTGTAATGCCATCTTTTGCCAGTGGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGCAAACCTCGCTTCCCTGTGTAATGCCATCTTTTGCCAGTGGG  1082

seq1  CATAGCTTATTCATTCACTGACTGTTTTGTTTTGTTTTTTCCCAGTGAGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTTATTCATTCACTGACTGTTTTGTTTTGTTTTTTCCCAGTGAGG  1132

seq1  TCTTAGTTGATTCACCTTAGTGAATTC  1172
      |||||||||||||||||||||||||||
seq2  TCTTAGTTGATTCACCTTAGTGAATTC  1159