BAC Information

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BAC

Clone NameB6Ng01-067N23
Chromosome11 (Build37)
Map Location 5,861,670 - 6,033,000
singlet/doubletdoublet
Overlap geneYkt6, Camk2b, LOC100042156, Nudcd3
Upstream geneAp1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck
Downstream geneLOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067N23.bB6Ng01-067N23.g
ACCDH886624DH886625
length1,043920
definitionDH886624|Mus musculus domesticus DNA, BAC clone: B6Ng01-067N23, 5' end.DH886625|Mus musculus domesticus DNA, BAC clone: B6Ng01-067N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,861,670 - 5,862,724)(6,032,281 - 6,033,000)
sequence
gaattcataatgtagaccaggttggcctcaaactcagaatttcacctgtc
tttgtctcctgagtactgagattaaaggcatgttgcagcacgacaatccc
tattcactccatggagtttagcacccagtgacttctcactataaaccctg
agacagaaagcactgccctgtccctcatagcactgaagcacttttcggca
catccaaagacccagcccactttttcttttttggtttttcgagacagggt
ttctctgtgtagccctggctgtccaggaactcactctgtagaccaggctg
gcctcagactcggcctttatctgcttctgcctcctgagtgccaccactgc
ctggtaagctcactttcttgaagagttactttggaaaactagagggctag
tataaaatgaggatgcttttagcatcctcagatgaagtttacctaatact
cggcacactttacatctgcttctagactactgagatatattttaatgata
aacattcaaaaagaggaacttgaacctagagagttcccttgccattggat
gtctgtgtatcctggggtgccctggagtctcatgtgggatgagcgctgtc
ggggaaggtgcttcaccgaaggtactaggaagttgggtggaagctatgtt
gcgtctcctttgttttgcaggtactagatgaattctccaagcaggtggat
agaatagactggccagtaggatccccggctacaatccagtacacaggcct
ggacgatcaccttagtaaataccaggtaaagaaacaccatctagagacgt
cccagaagctgtgggacctggaaaaggtccacacccgtggtagctcaggc
tgatgcgcaggtgaatggtctgtttgagaaccacagagaaatcgtttcag
ataaccctaggtttgagtccatgttctgggcttttttattgtgagattgg
tagttcctcagtcaacattgttataggcactacttcagtctcaccttgac
tttgttttgtttccaaaccccgaaaagctgatcccattagtaa
gaattcactgagcttctgggatgttcagattaattgtgtcagatttggaa
agttttcagccgttactgtttcaggtagtttttggcatttctctcctatc
tatctgtgagtccttattttgaaaatgttggtgtctcttggacaatcctg
atcattttccttctgttccttagactaaacctaactttatttaagtttgc
ctgatcctgtttccaaatgctgagctctgcttttgaaaatctcctctaca
tttattacttggtgtgtttgcatgtgggtatgtgcagttgtgtgtaagca
cctgaggaggccacttgtactcagtggacatctccagaggcatcaaatct
ggagctaggcagcggtgacccaccctgtatgggtaccaggaattgaactc
cagtcctggaagaggagcataccgctcttcactgctgagctgcctggtac
cttctccacgcacttttcttttcttttttttttttttttaagatttattt
atttacttacttacttactacatgtaagtacactgtagctgtcttcagac
attccagaagagggcatcagatctcattatggatggttttgagccatcat
gtggttgctggggtttgaactcaggaccttcggaagagcagtcagtgctc
ttacctgctgagccatctttccagcccctccacgtacttttaagctccgt
aactcatagttgtctgagaaaagactaacttccatgtctttattgatatt
ccacttaggagactttgtcctcctcatactttcctaaaggactttggttt
ttctttagtttttgagtgatttaaaataattggtttgtagtcttttttta
acaagcccttgtctgtacttacataagcgtagtttgttcactgctttctt
caccatgtctggtcgcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5861670_5862724
seq2: B6Ng01-067N23.b_48_1090

seq1  GAATTCATAATGTAGACCAGGTTGGCCTCAAACTCAGAATTTCACCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGTAGACCAGGTTGGCCTCAAACTCAGAATTTCACCTGTC  50

seq1  TTTGTCTCCTGAGTACTGAGATTAAAGGCATGTTGCAGCACGACAATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCCTGAGTACTGAGATTAAAGGCATGTTGCAGCACGACAATCCC  100

seq1  TATTCACTCCATGGAGTTTAGCACCCAGTGACTTCTCACTATAAACCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTCCATGGAGTTTAGCACCCAGTGACTTCTCACTATAAACCCTG  150

seq1  AGACAGAAAGCACTGCCCTGTCCCTCATAGCACTGAAGCACTTTTCGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAGCACTGCCCTGTCCCTCATAGCACTGAAGCACTTTTCGGCA  200

seq1  CATCCAAAGACCCAGCCCACTTTTTCTTTTTTGGTTTTTCGAGACAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAAGACCCAGCCCACTTTTTCTTTTTTGGTTTTTCGAGACAGGGT  250

seq1  TTCTCTGTGTAGCCCTGGCTGTCCAGGAACTCACTCTGTAGACCAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCAGGAACTCACTCTGTAGACCAGGCTG  300

seq1  GCCTCAGACTCGGCCTTTATCTGCTTCTGCCTCCTGAGTGCCACCACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGACTCGGCCTTTATCTGCTTCTGCCTCCTGAGTGCCACCACTGC  350

seq1  CTGGTAAGCTCACTTTCTTGAAGAGTTACTTTGGAAAACTAGAGGGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGCTCACTTTCTTGAAGAGTTACTTTGGAAAACTAGAGGGCTAG  400

seq1  TATAAAATGAGGATGCTTTTAGCATCCTCAGATGAAGTTTACCTAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGAGGATGCTTTTAGCATCCTCAGATGAAGTTTACCTAATACT  450

seq1  CGGCACACTTTACATCTGCTTCTAGACTACTGAGATATATTTTAATGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACACTTTACATCTGCTTCTAGACTACTGAGATATATTTTAATGATA  500

seq1  AACATTCAAAAAGAGGAACTTGAACCTAGAGAGTTCCCTTGCCATTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCAAAAAGAGGAACTTGAACCTAGAGAGTTCCCTTGCCATTGGAT  550

seq1  GTCTGTGTATCCTGGGGTGCCCTGGAGTCTCATGTGGGATGAGCGCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTATCCTGGGGTGCCCTGGAGTCTCATGTGGGATGAGCGCTGTC  600

seq1  GGGGAAGGTGCTTCACCGAAGGTACTAGGAAGTTGGGTGGAAGCTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGTGCTTCACCGAAGGTACTAGGAAGTTGGGTGGAAGCTATGTT  650

seq1  GCGTCTCCTTTGTTTTGCAGGTACTAGATGAATTCTCCAAGCAGGTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTCCTTTGTTTTGCAGGTACTAGATGAATTCTCCAAGCAGGTGGAT  700

seq1  AGAATAGACTGGCCAGTAGGATCCCCGGCTACAATCCAGTACACAGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGACTGGCCAGTAGGATCCCCGGCTACAATCCAGTACACAGGCCT  750

seq1  GGACGATCACCTTAGTAAATACCAGGTAAAGAAACACCATCTAGAGACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGATCACCTTAGTAAATACCAGGTAAAGAAACACCATCTAGAGACGT  800

seq1  CCCAGAAGCTGTGGGACCTGGAAAAGGTCCACACCCGTGGTAGCTCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCAGAAGCTGTGGGACCTGGAAAAGGTCCACACCCGTGGTAGCTCA-GG  849

seq1  CTGATGCGCAGGTGAATGGTCTGTTTGAGAACCACAGAGAAATCGTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCGCAGGTGAATGGTCTGTTTGAGAACCACAGAGAAATCGTTTCA  899

seq1  GATAACCCTAGGTTTTGAGTCCACTGTTCTGTGCCTTTTTATTGTGAGAA  950
      |||||||||||| |||||||||| ||||||| || ||||||||||||| |
seq2  GATAACCCTAGG-TTTGAGTCCA-TGTTCTGGGCTTTTTTATTGTGAG-A  946

seq1  TTGGTAGTTTCCTCAGTTCAACATTGTTTATAGGTAACTACTTCAGTCTC  1000
      ||||||| |||||||| ||||||||| |||||||  ||||||||||||||
seq2  TTGGTAG-TTCCTCAG-TCAACATTG-TTATAGG-CACTACTTCAGTCTC  992

seq1  AACCTTGACTTTGTTTTGTTTCCTAGAACCCCCGAGAAGCTGATCCCATG  1050
       ||||||||||||||||||||||   || |||||| ||||||||||||| 
seq2  -ACCTTGACTTTGTTTTGTTTCC---AAACCCCGAAAAGCTGATCCCATT  1038

seq1  AGTAA  1055
      |||||
seq2  AGTAA  1043

seq1: chr11_6032281_6033000
seq2: B6Ng01-067N23.g_68_787 (reverse)

seq1  TTCTCAGACAACTATGAGTTACGGAGCTTAAAAGTACGTGGAGGGGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGACAACTATGAGTTACGGAGCTTAAAAGTACGTGGAGGGGCTGG  50

seq1  AAAGATGGCTCAGCAGGTAAGAGCACTGACTGCTCTTCCGAAGGTCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGCTCAGCAGGTAAGAGCACTGACTGCTCTTCCGAAGGTCCTGA  100

seq1  GTTCAAACCCCAGCAACCACATGATGGCTCAAAACCATCCATAATGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACCCCAGCAACCACATGATGGCTCAAAACCATCCATAATGAGAT  150

seq1  CTGATGCCCTCTTCTGGAATGTCTGAAGACAGCTACAGTGTACTTACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCCTCTTCTGGAATGTCTGAAGACAGCTACAGTGTACTTACATG  200

seq1  TAGTAAGTAAGTAAGTAAATAAATAAATCTTAAAAAAAAAAAAAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTAAGTAAGTAAATAAATAAATCTTAAAAAAAAAAAAAAAAGAA  250

seq1  AAGAAAAGTGCGTGGAGAAGGTACCAGGCAGCTCAGCAGTGAAGAGCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTGCGTGGAGAAGGTACCAGGCAGCTCAGCAGTGAAGAGCGGT  300

seq1  ATGCTCCTCTTCCAGGACTGGAGTTCAATTCCTGGTACCCATACAGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTCTTCCAGGACTGGAGTTCAATTCCTGGTACCCATACAGGGTG  350

seq1  GGTCACCGCTGCCTAGCTCCAGATTTGATGCCTCTGGAGATGTCCACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCGCTGCCTAGCTCCAGATTTGATGCCTCTGGAGATGTCCACTGA  400

seq1  GTACAAGTGGCCTCCTCAGGTGCTTACACACAACTGCACATACCCACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGTGGCCTCCTCAGGTGCTTACACACAACTGCACATACCCACATG  450

seq1  CAAACACACCAAGTAATAAATGTAGAGGAGATTTTCAAAAGCAGAGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACCAAGTAATAAATGTAGAGGAGATTTTCAAAAGCAGAGCTCA  500

seq1  GCATTTGGAAACAGGATCAGGCAAACTTAAATAAAGTTAGGTTTAGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGAAACAGGATCAGGCAAACTTAAATAAAGTTAGGTTTAGTCTA  550

seq1  AGGAACAGAAGGAAAATGATCAGGATTGTCCAAGAGACACCAACATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGAAGGAAAATGATCAGGATTGTCCAAGAGACACCAACATTTTC  600

seq1  AAAATAAGGACTCACAGATAGATAGGAGAGAAATGCCAAAAACTACCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGGACTCACAGATAGATAGGAGAGAAATGCCAAAAACTACCTGA  650

seq1  AACAGTAACGGCTGAAAACTTTCCAAATCTGACACAATTAATCTGAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAACGGCTGAAAACTTTCCAAATCTGACACAATTAATCTGAACAT  700

seq1  CCCAGAAGCTCAGTGAATTC  720
      ||||||||||||||||||||
seq2  CCCAGAAGCTCAGTGAATTC  720