BAC Information

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BAC

Clone NameB6Ng01-068D17
Chromosome11 (Build37)
Map Location 49,690,156 - 49,825,225
singlet/doubletdoublet
Overlap geneMapk9, Rasgef1c
Upstream geneEG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2
Downstream geneRnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068D17.bB6Ng01-068D17.g
ACCDH886882DH886883
length1,152488
definitionDH886882|Mus musculus domesticus DNA, BAC clone: B6Ng01-068D17, 5' end.DH886883|Mus musculus domesticus DNA, BAC clone: B6Ng01-068D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,824,059 - 49,825,225)(49,690,156 - 49,690,649)
sequence
gaattcctgcttacagttcctctaagtttctgctatccccttactctttc
tgcttctggctgcccgccccctccgtctcctcctcactctgtgtctcact
cccttctggaacctgctctctaaaccatggcagaccacttctctcgagcc
tcacttctctttaggagccacctgctcagtctctgtccctctcactggct
cgctagagcctaccctacagaagtcctgcaggtacagcaggcagattctt
tatgccctcctgggcctctgtgatattgccgtcttccctctggcagcact
cctgttcatgatccctttccctaagccttccctgcctctgctctactctg
tctccaaagtatgtctcccccacaccctctctcttggttcacccctgtct
ttaactcatcgactcttccctcagctgccttctctaacttcttttcctct
tcagactcagagaatccattaaggcacactgtcttacagcaaacagcttg
acttcagtataaaccagacaaccattctcaatgaccaggaaatggcacac
ttgaattccaaattcacagattgtaacaactgccaccatgcatgcaaagg
tccaaaagcactttcctcgcctctaagttcttttatttgctctcaaatgt
ctcatatctccaagccttctctgctctctacttgctctcacctttcccct
aactgctaacttcaatcttacagagcttcaaatggttttgttttgttttt
gtttttgtttttgtgggggttacagaggatattgaaaacttgtctcatac
tgctttactctactaaaaagctggctctgaagtttgcttatggccccatg
tctacattatcaagcatgcttgtttaagtttcctctaaaatctgtgttct
gggtcaggctggccacctgactccgtgacagggataaagagaacaaatag
aacagcccagaaaagacactatgtgctttaaaatagctaaaagtgaactc
ttccccaaattgattacctcgctagctcacctcccacctgtttccctgtc
ttatttactagtacttcctctcctagaagctcaaactattctcagatttg
tgaggctctggtgtaaacttccgattcaggattcattgggtaagtttttt
tt
aaaggagagatttggagtaaggaaaatgtgggaaccgttggtctggtgct
aagcattgaagagatgagcaaaggctcaaggaaaaggagtcagcactcag
aactgacaccgggtttagtgggcgcctcaggcaacctttgtggaaacagt
tgtcaagatgactaaggagggaggtctgaagagagtgtgctctggagagc
acgaatgggtaaggattagagatgcaggtctcagaaagcaggggcaggga
atgtaaaggaaagtgcttgctgttaacatggaagaacatcatgcttgagt
gagaacagaaggttccggtagcgatcacgttggggttagaacagcaagaa
agaagaatatgagacagttgtccttcagtaggtgagagggtgaggtaggt
gggcttggcttttagccaggagcccagatggttcccagtggtaagtagca
taagatatgggggtggggtatcatagcactgttatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49824059_49825225
seq2: B6Ng01-068D17.b_46_1197 (reverse)

seq1  AAAAAAAACTATACCCAATGAAATCCTGAGATACAGAAAGTTTACA-CAG  49
      |||||||||| ||||||||| ||||||||   |  | ||||||||| |||
seq2  AAAAAAAACT-TACCCAATG-AATCCTGA---ATCGGAAGTTTACACCAG  45

seq1  AGGCCTCACAAATCTTGAGAATAAGTTTTAGAGC-TCTAGGAGAGGGAAG  98
      | |||||||||||| ||||||| |||||  |||| ||||||||| |||||
seq2  A-GCCTCACAAATC-TGAGAAT-AGTTT--GAGCTTCTAGGAGA-GGAAG  89

seq1  TACTTAGTTAAATAAGACAGGGAAACAGGTGTGAGGTGAGCTAGCGGAGG  148
      ||| ||| ||||||||||||||||||||||| ||||||||||||| ||||
seq2  TAC-TAG-TAAATAAGACAGGGAAACAGGTGGGAGGTGAGCTAGC-GAGG  136

seq1  TAATCAATTTGGGGAAGAGTTCACTTTTTAGCTATTTTAAAGCACATAGT  198
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAATCAATTTGGGGAAGAGTTCAC-TTTTAGCTATTTTAAAGCACATAGT  185

seq1  GTCTTTTTCTGGGCTGTTCTATTTTGTTCTCTTTATCCCTGTCACGGAGT  248
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTC-TTTTCTGGGCTGTTCTA-TTTGTTCTCTTTATCCCTGTCACGGAGT  233

seq1  CAGGTGGCCAGCCTGACCCAGAACACAGATTTTAGAGGAAACTTAAACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCCAGCCTGACCCAGAACACAGATTTTAGAGGAAACTTAAACAA  283

seq1  GCATGCTTGATAATGTAGACATGGGGCCATAAGCAAACTTCAGAGCCAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTGATAATGTAGACATGGGGCCATAAGCAAACTTCAGAGCCAGC  333

seq1  TTTTTAGTAGAGTAAAGCAGTATGAGACAAGTTTTCAATATCCTCTGTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTAGAGTAAAGCAGTATGAGACAAGTTTTCAATATCCTCTGTAA  383

seq1  CCCCCACAAAAACAAAAACAAAAACAAAACAAAACCATTTGAAGCTCTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAAAAACAAAAACAAAAACAAAACAAAACCATTTGAAGCTCTGT  433

seq1  AAGATTGAAGTTAGCAGTTAGGGGAAAGGTGAGAGCAAGTAGAGAGCAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAAGTTAGCAGTTAGGGGAAAGGTGAGAGCAAGTAGAGAGCAGA  483

seq1  GAAGGCTTGGAGATATGAGACATTTGAGAGCAAATAAAAGAACTTAGAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTGGAGATATGAGACATTTGAGAGCAAATAAAAGAACTTAGAGG  533

seq1  CGAGGAAAGTGCTTTTGGACCTTTGCATGCATGGTGGCAGTTGTTACAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAAAGTGCTTTTGGACCTTTGCATGCATGGTGGCAGTTGTTACAAT  583

seq1  CTGTGAATTTGGAATTCAAGTGTGCCATTTCCTGGTCATTGAGAATGGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATTTGGAATTCAAGTGTGCCATTTCCTGGTCATTGAGAATGGTT  633

seq1  GTCTGGTTTATACTGAAGTCAAGCTGTTTGCTGTAAGACAGTGTGCCTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTTTATACTGAAGTCAAGCTGTTTGCTGTAAGACAGTGTGCCTTA  683

seq1  ATGGATTCTCTGAGTCTGAAGAGGAAAAGAAGTTAGAGAAGGCAGCTGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTCTCTGAGTCTGAAGAGGAAAAGAAGTTAGAGAAGGCAGCTGAG  733

seq1  GGAAGAGTCGATGAGTTAAAGACAGGGGTGAACCAAGAGAGAGGGTGTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGTCGATGAGTTAAAGACAGGGGTGAACCAAGAGAGAGGGTGTGG  783

seq1  GGGAGACATACTTTGGAGACAGAGTAGAGCAGAGGCAGGGAAGGCTTAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACATACTTTGGAGACAGAGTAGAGCAGAGGCAGGGAAGGCTTAGG  833

seq1  GAAAGGGATCATGAACAGGAGTGCTGCCAGAGGGAAGACGGCAATATCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGATCATGAACAGGAGTGCTGCCAGAGGGAAGACGGCAATATCAC  883

seq1  AGAGGCCCAGGAGGGCATAAAGAATCTGCCTGCTGTACCTGCAGGACTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCAGGAGGGCATAAAGAATCTGCCTGCTGTACCTGCAGGACTTC  933

seq1  TGTAGGGTAGGCTCTAGCGAGCCAGTGAGAGGGACAGAGACTGAGCAGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGTAGGCTCTAGCGAGCCAGTGAGAGGGACAGAGACTGAGCAGGT  983

seq1  GGCTCCTAAAGAGAAGTGAGGCTCGAGAGAAGTGGTCTGCCATGGTTTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTAAAGAGAAGTGAGGCTCGAGAGAAGTGGTCTGCCATGGTTTAG  1033

seq1  AGAGCAGGTTCCAGAAGGGAGTGAGACACAGAGTGAGGAGGAGACGGAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGTTCCAGAAGGGAGTGAGACACAGAGTGAGGAGGAGACGGAGG  1083

seq1  GGGCGGGCAGCCAGAAGCAGAAAGAGTAAGGGGATAGCTGAAACTTAGAG  1148
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGCGGGCAGCCAGAAGCAGAAAGAGTAAGGGGATAGCAGAAACTTAGAG  1133

seq1  GAACTGTAAGCAGGAATTC  1167
      |||||||||||||||||||
seq2  GAACTGTAAGCAGGAATTC  1152

seq1: chr11_49690156_49690649
seq2: B6Ng01-068D17.g_72_565

seq1  GAATTCAAAGGAGAGATTTGGAGTAAGGAAAATGTGGGAACCGTTGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAGAGATTTGGAGTAAGGAAAATGTGGGAACCGTTGGTCT  50

seq1  GGTGCTAAGCATTGAAGAGATGAGCAAAGGCTCAAGGAAAAGGAGTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAAGCATTGAAGAGATGAGCAAAGGCTCAAGGAAAAGGAGTCAGC  100

seq1  ACTCAGAACTGACACCGGGTTTAGTGGGCGCCTCAGGCAACCTTTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAACTGACACCGGGTTTAGTGGGCGCCTCAGGCAACCTTTGTGGA  150

seq1  AACAGTTGTCAAGATGACTAAGGAGGGAGGTCTGAAGAGAGTGTGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTGTCAAGATGACTAAGGAGGGAGGTCTGAAGAGAGTGTGCTCTG  200

seq1  GAGAGCACGAATGGGTAAGGATTAGAGATGCAGGTCTCAGAAAGCAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCACGAATGGGTAAGGATTAGAGATGCAGGTCTCAGAAAGCAGGGG  250

seq1  CAGGGAATGTAAAGGAAAGTGCTTGCTGTTAACATGGAAGAACATCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATGTAAAGGAAAGTGCTTGCTGTTAACATGGAAGAACATCATGC  300

seq1  TTGAGTGAGAACAGAAGGTTCCGGTAGCGATCACGTTGGGGTTAGAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGAGAACAGAAGGTTCCGGTAGCGATCACGTTGGGGTTAGAACAG  350

seq1  CAAGAAAGAAGAATATGAGACAGTTGTCCTTCAGTAGGTGAGAGGGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAAGAATATGAGACAGTTGTCCTTCAGTAGGTGAGAGGGTGAG  400

seq1  GTAGGTGGGCTTGGCTTTTAGCCAGGAGCCCAGATGGTTCCCAGTGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGGGCTTGGCTTTTAGCCAGGAGCCCAGATGGTTCCCAGTGGTAA  450

seq1  GTAGCATAAGATATGGGGGTGGGGTATCATAGCACTGTTATGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATAAGATATGGGGGTGGGGTATCATAGCACTGTTATGAT  494