BAC Information

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BAC

Clone NameB6Ng01-068L21
Chromosome11 (Build37)
Map Location 54,431,218 - 54,575,021
singlet/doubletdoublet
Overlap geneRapgef6, Cdc42se2, LOC677786
Upstream geneIl4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
Downstream geneLOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068L21.bB6Ng01-068L21.g
ACCDH887240DH887241
length1,1781,146
definitionDH887240|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L21, 5' end.DH887241|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,573,828 - 54,575,021)(54,431,218 - 54,432,387)
sequence
gaattcagatagaaatgtaagaaagattaagtttggaaaacatgatactg
tcccaaaagtgagattaaagaggaatcttagacttggagcctgggttgga
aacaggtcgtggtgagttggtggagcaaaggaatcctgtcaccaaagagg
gactgtgagagagctggggagccagcatactttgtaacccagctcttggg
aggcagaggcagaggcagaggcagaggggcagagagagaggggcagagag
agaggggggcagagagaggcagagaggcagagaggcagaggcagagaggc
aagaggacagagatttcccatgccagcctgtctagtgtggcactgatcca
cagaaggaggaggagatagaacatttgaaaatgaaatatagggggaaaat
cagaaagcatttcagttataaacaagggtggtcatgcaatttatgattag
gtagaattttaatataatttgttatttgaactggacatcctgagatagag
acaggaatgaccatgaaaacaagtgtaaattgaaaccatgatgggcagtc
cttatacaaggttatatctatttcatttgtagcataatgaaatatttaaa
aattcagttgagtgtcaagcattatactgaattaagtggcacttctgctt
gcttctgcttctcaagtgcctgtgccaccatgcccaatttataagtatat
atatatttattagattatctggagtagtttaataggaatcaagttctgct
aatgtgagtttctatccatttgggaaaaatgaaaactaagtaaaaaattt
tccagtaagacctagggctctcccttacagtttgatcggtttaagcttat
gacttttgaattacagtggattggtacttaaaacttgtaagagggtgtaa
ggattagaaggagtcatagctgggtttctgctattagtgggatctttatt
tactctccactgtcctgatagtagatactgaggcagacatatactttgac
gcagcagtgacacagaacagtgtccagtggttctctcatcttctggtctc
actgggtgatggagaactgtttaactttttctgtgactgctgatgtttga
ggatgtccactcatttaggagattcttttttattcatggcacttgtgtat
ccttggaaacaaaggttctgtccggaga
gaattccaaattacagtaatgacaaatttgctatcctgtgaaagatctct
ttctgatctgtagatggcaccatctagctatttcctcatatggaagaaag
gttggatgggcttcctctggcctcgtatagtactacccgtgaggcactac
ccattcatgaggattctaataacttggtgaggttttagctgctcagaggc
tccaccttccagcaccatcatcttgaagttaagatttctttctattaaga
atttttagggtgttggagagatggctccatgtaagagcacttgtgatttt
ggctcctagctccatatagcagctcacaaccatcaataaccccagtgcag
ggaattagatgcccttttctgacctctgtggacaccaggcacacatgcag
tttacttacaatacatgtagccaaaacattcatatacatataatgaaaat
agttataatttttatgggctggagagatagtgcaatggttaagagtactg
actactcttccagaaatcctgagtccaatttctagcacctacatggtagc
tcacagccatttttaatggtatgtgattccctcttctggtgttcatgaag
acagagcaccactcatattcataaataaatgaataactcttttttaaaaa
gttttaggatctggggatatgccttggctaaaggagccttgggtggccct
atatttgatgcctagcactgttgaaaagggaggaagatgtatgtagccca
gttagtagagtgcttaccgttaccattaggttcaaccttagcacttcata
aactgagcataggagcatatacctataatcctaaatggcagcaggaagat
cagaagtttaaaggccttcttggctacaggtcaaggcccatctgggccac
atgaaaccctgtctcaaaaggaaagaggatatggttcaggccatagcagc
agactgttacaaccatctttctagtcttaaagagctcattgtatattcat
tctggattattactacttaaaaataagagatccaagcattataattgtgc
ataaaggcagacttagttgtcatctgagccttaatgttgattaacaagcc
agaagataatagctgtcccaagaaattgtgagcagtctgacgcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54573828_54575021
seq2: B6Ng01-068L21.b_48_1225 (reverse)

seq1  TCTCCGCACAGAAACTTTTGTTTTCCAAGGTATCCATCAAAGTGCCATGA  50
      |||||| |||||| ||||   ||||||||| || ||   |||||||||||
seq2  TCTCCGGACAGAACCTTT--GTTTCCAAGG-ATACA--CAAGTGCCATGA  45

seq1  ATAAAAAAAGGATTCTCTTTAAATGAGTTGACATCTTCAAACACATCCAG  100
      ||||||||  || ||||  ||||||||| |||||| ||||  |||||   
seq2  ATAAAAAA--GAATCTC-CTAAATGAGTGGACATCCTCAA--ACATC--A  88

seq1  GCAGTCACAG-AAAAGTTAAACATGTTCTCCATCACCCAGTGAGACCAGA  149
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  GCAGTCACAGAAAAAGTTAAACA-GTTCTCCATCACCCAGTGAGACCAGA  137

seq1  GGATGAGGAGAACCACTGGGACACTGTTCTGTGTCACTGCTGCGTCAAAG  199
       ||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  AGATGA-GAGAACCACT-GGACACTGTTCTGTGTCACTGCTGCGTCAAAG  185

seq1  TATAATGTCCTGCCTCAGTATCTACTATCAGGACAGTGGAGAGTAAATAA  249
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAT-ATGT-CTGCCTCAGTATCTACTATCAGGACAGTGGAGAGTAAATAA  233

seq1  AGATCCCACTAATAGCAGAAACCCAGCTATGACTCCTTCTAATCCTTACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCACTAATAGCAGAAACCCAGCTATGACTCCTTCTAATCCTTACA  283

seq1  CCCTCTTACAAGTTTTAAGTACCAATCCACTGTAATTCAAAAGTCATAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTACAAGTTTTAAGTACCAATCCACTGTAATTCAAAAGTCATAAG  333

seq1  CTTAAACCGATCAAACTGTAAGGGAGAGCCCTAGGTCTTACTGGAAAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACCGATCAAACTGTAAGGGAGAGCCCTAGGTCTTACTGGAAAATT  383

seq1  TTTTACTTAGTTTTCATTTTTCCCAAATGGATAGAAACTCACATTAGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTAGTTTTCATTTTTCCCAAATGGATAGAAACTCACATTAGCAG  433

seq1  AACTTGATTCCTATTAAACTACTCCAGATAATCTAATAAATATATATATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATTCCTATTAAACTACTCCAGATAATCTAATAAATATATATATA  483

seq1  CTTATAAATTGGGCATGGTGGCACAGGCACTTGAGAAGCAGAAGCAAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAATTGGGCATGGTGGCACAGGCACTTGAGAAGCAGAAGCAAGCA  533

seq1  GAAGTGCCACTTAATTCAGTATAATGCTTGACACTCAACTGAATTTTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCCACTTAATTCAGTATAATGCTTGACACTCAACTGAATTTTTAA  583

seq1  ATATTTCATTATGCTACAAATGAAATAGATATAACCTTGTATAAGGACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATTATGCTACAAATGAAATAGATATAACCTTGTATAAGGACTG  633

seq1  CCCATCATGGTTTCAATTTACACTTGTTTTCATGGTCATTCCTGTCTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATGGTTTCAATTTACACTTGTTTTCATGGTCATTCCTGTCTCTA  683

seq1  TCTCAGGATGTCCAGTTCAAATAACAAATTATATTAAAATTCTACCTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGATGTCCAGTTCAAATAACAAATTATATTAAAATTCTACCTAAT  733

seq1  CATAAATTGCATGACCACCCTTGTTTATAACTGAAATGCTTTCTGATTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTGCATGACCACCCTTGTTTATAACTGAAATGCTTTCTGATTTT  783

seq1  CCCCCTATATTTCATTTTCAAATGTTCTATCTCCTCCTCCTTCTGTGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTATATTTCATTTTCAAATGTTCTATCTCCTCCTCCTTCTGTGGAT  833

seq1  CAGTGCCACACTAGACAGGCTGGCATGGGAAATCTCTGTCCTCTTGCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCACACTAGACAGGCTGGCATGGGAAATCTCTGTCCTCTTGCCTC  883

seq1  TCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTGCCCCCCTCTCTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTGCCCCCCTCTCTCTC  933

seq1  TGCCCCTCTCTCTCTGCCCCTCTGCCTCTGCCTCTGCCTCTGCCTCCCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTCTCTCTCTGCCCCTCTGCCTCTGCCTCTGCCTCTGCCTCCCAA  983

seq1  GAGCTGGGTTACAAAGTATGCTGGCTCCCCAGCTCTCTCACAGTCCCTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGGTTACAAAGTATGCTGGCTCCCCAGCTCTCTCACAGTCCCTCT  1033

seq1  TTGGTGACAGGATTCCTTTGCTCCACCAACTCACCACGACCTGTTTCCAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGACAGGATTCCTTTGCTCCACCAACTCACCACGACCTGTTTCCAA  1083

seq1  CCCAGGCTCCAAGTCTAAGATTCCTCTTTAATCTCACTTTTGGGACAGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCCAAGTCTAAGATTCCTCTTTAATCTCACTTTTGGGACAGTA  1133

seq1  TCATGTTTTCCAAACTTAATCTTTCTTACATTTCTATCTGAATTC  1194
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTCCAAACTTAATCTTTCTTACATTTCTATCTGAATTC  1178

seq1: chr11_54431218_54432387
seq2: B6Ng01-068L21.g_67_1212

seq1  GAATTCCAAATTACAGTAATGACAAATTTGCTATCCTGTGAAAGATCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTACAGTAATGACAAATTTGCTATCCTGTGAAAGATCTCT  50

seq1  TTCTGATCTGTAGATGGCACCATCTAGCTATTTCCTCATATGGAAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCTGTAGATGGCACCATCTAGCTATTTCCTCATATGGAAGAAAG  100

seq1  GTTGGATGGGCTTCCTCTGGCCTCGTATAGTACTACCCGTGAGGCACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGGGCTTCCTCTGGCCTCGTATAGTACTACCCGTGAGGCACTAC  150

seq1  CCATTCATGAGGATTCTAATAACTTGGTGAGGTTTTAGCTGCTCAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATGAGGATTCTAATAACTTGGTGAGGTTTTAGCTGCTCAGAGGC  200

seq1  TCCACCTTCCAGCACCATCATCTTGAAGTTAAGATTTCTTTCTATTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTCCAGCACCATCATCTTGAAGTTAAGATTTCTTTCTATTAAGA  250

seq1  ATTTTTAGGGTGTTGGAGAGATGGCTCCATGTAAGAGCACTTGTGATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGGGTGTTGGAGAGATGGCTCCATGTAAGAGCACTTGTGATTTT  300

seq1  GGCTCCTAGCTCCATATAGCAGCTCACAACCATCAATAACCCCAGTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTAGCTCCATATAGCAGCTCACAACCATCAATAACCCCAGTGCAG  350

seq1  GGAATTAGATGCCCTTTTCTGACCTCTGTGGACACCAGGCACACATGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAGATGCCCTTTTCTGACCTCTGTGGACACCAGGCACACATGCAG  400

seq1  TTTACTTACAATACATGTAGCCAAAACATTCATATACATATAATGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTACAATACATGTAGCCAAAACATTCATATACATATAATGAAAAT  450

seq1  AGTTATAATTTTTATGGGCTGGAGAGATAGTGCAATGGTTAAGAGTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAATTTTTATGGGCTGGAGAGATAGTGCAATGGTTAAGAGTACTG  500

seq1  ACTACTCTTCCAGAAATCCTGAGTCCAATTTCTAGCACCTACATGGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTTCCAGAAATCCTGAGTCCAATTTCTAGCACCTACATGGTAGC  550

seq1  TCACAGCCATTTTTAATGGTATGTGATTCCCTCTTCTGGTGTTCATGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCATTTTTAATGGTATGTGATTCCCTCTTCTGGTGTTCATGAAG  600

seq1  ACAGAGCACCACTCATATTCATAAATAAATGAATAACTCTTTTTTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCACCACTCATATTCATAAATAAATGAATAACTCTTTTTTAAAAA  650

seq1  GTTTTAGGATCTGGGGATATGCCTTGGCTAAAGGAGCCTTGGGTGGCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGGATCTGGGGATATGCCTTGGCTAAAGGAGCCTTGGGTGGCCCT  700

seq1  ATATTTGATGCCTAGCACTGTTGAAAAGGGAGGAAGATGTATGTAGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGATGCCTAGCACTGTTGAAAAGGGAGGAAGATGTATGTAGCCCA  750

seq1  GTTAGTAGAGTGCTTACCGTTACCATTAGGTTCAACCTTAGCACTTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAGAGTGCTTACCGTTACCATTAGGTTCAACCTTAGCACTTCATA  800

seq1  AACTGAGCATAGGAGCATATACCTATAATCCTAAATGGCAGCAGGAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCATAGGAGCATATACCTATAATCCTAAATGGCAGCAGGAAGAT  850

seq1  CAGAAGTTTAAAGGCCTTCTTGGCTACAGGTCAAGGCCCATCTGGGCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTAAAGGCCTTCTTGGCTACAGGTCAAGGCCCATCTGGGCCAC  900

seq1  ATGAAACCCTGTCTCAAAAAGGAAAAGAGGATAATGGTCCAGGCCATAGC  950
      |||||||||||||||||||  | ||||||||| ||||| |||||||||||
seq2  ATGAAACCCTGTCTCAAAA--GGAAAGAGGAT-ATGGTTCAGGCCATAGC  947

seq1  AGCAGACTGTTACAAACCATCTTTTCTAGTCTTAAAGGAGCTCATTGTAT  1000
      ||||||||||||| ||||||| |||||||||||||| |||||||||||||
seq2  AGCAGACTGTTAC-AACCATC-TTTCTAGTCTTAAA-GAGCTCATTGTAT  994

seq1  ATTCATTCTGGATTATTAACTACTTAAAAATAAAGAGGAATCCAAAGGCA  1050
      ||||||||||||||||| ||||||||||||| |||||  ||||||  |||
seq2  ATTCATTCTGGATTATT-ACTACTTAAAAAT-AAGAG--ATCCAA--GCA  1038

seq1  CTATAAATTGTGCATAAAGCAAGACTAAGTTGTCATCTGAGCCCTAATGT  1100
       ||| ||||||||||||||  ||||| |||||||||||||||| ||||||
seq2  TTAT-AATTGTGCATAAAGGCAGACTTAGTTGTCATCTGAGCCTTAATGT  1087

seq1  GAATTAACAAAGGCCAGAAGATTAATATGCTGGCCCACAGAGAAAATGTG  1150
        ||||||||  ||||||||| ||||| |||| ||||   ||||| ||||
seq2  TGATTAACAA--GCCAGAAGA-TAATA-GCTGTCCCA---AGAAATTGTG  1130

seq1  GAAGCAGTTCTGACAGCAGG  1170
        ||||| |||||| |||||
seq2  --AGCAG-TCTGAC-GCAGG  1146