BAC Information

Click to search

BAC

Clone NameB6Ng01-069C03
Chromosome11 (Build37)
Map Location 77,928,625 - 78,053,643
singlet/doubletdoublet
Overlap geneBC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h
Upstream geneEfcab5, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1
Downstream geneSdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069C03.bB6Ng01-069C03.g
ACCDH887528DH887529
length925491
definitionDH887528|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C03, 5' end.DH887529|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,052,886 - 78,053,643)(77,928,625 - 77,929,121)
sequence
gaattcatgatatagtgacctaattaaagcaaattgtgtgttgagactgt
tgtatccaaatctatttttaatgtctcagttcagggcttaggaggagcag
tgttcaaattaaaattagcaggcatggtggctcattcttttaatcacagc
acccaggagactgaggttggaagattgctgtgagtcctactgagtgaagt
ttcaggttacacagcccagagtggaaaactgccttaaaaaacaccaaata
tagggatggggttctctttccacccttcctctttccttcctttctatctt
tacttttttttttctttctttctttttttttttagttgtggtctcactat
acagtcctggaactctgtaaataaacaagtctggcctccagttcacagag
attcccccttctaaattgtgggattaaaggcatgatccaccacatccagc
ctagaacttcagatttaattggcaaaatcttttttttttttttttttaaa
tttttttatttagtcatttatttatttatttatttagtatgaatacactg
tagctgtcttcagacacaccagaagagggcatcagattccattacagatg
gctgtgagccaccatgtggttgctgggaattgaactcaggacctctggac
aagcagtcagtgctcttaaccactgagccattcctccagcccggcaaaat
ctttaagacactcatgcggcattactcaagctcagtgaccttaaagataa
agatcttaggaaacaaaagcagggggcataggcctgatccatgtaacagc
tctgcacaactttacatagtcatcaaacttcagaccaatttataaccttt
aaaattatccaagagatcagcagtgggtcttgttgggtggtggtggcgca
tgcctttatcttttttttttttttt
agttgattagtctgagaaaaggaaggtaaagcggagaggcctggagagca
tcctttttgtggttgggtgtcttccggtggttacttggtttggaagtcag
aagaagcgttttggcaggaaacacccgggggctggtcacttttagtaccc
agagtgggtggaggagcaggagaagtggcgggcggggcatcacctggccc
agccgctggatgcttggctcccagcttcgttgtgggcaccaggagagacg
ggggcagcggtaacaaagaggagccgtgccggggccggggccgcgggtag
ctggcctatccccggcggctgacctcccagtgggcctccccagttggctg
tttggcaagtcgctctgctggttccttggctcaggattggctgtgtagac
aggagggagcttgcaaagagcagggatggagttgagggggcggggctggc
ttccggcggtggaggggagagagccggagccggctggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78052886_78053643
seq2: B6Ng01-069C03.b_46_803 (reverse)

seq1  TAAGATCTTTATCCTTAAGGTCACTGAGCTTGAGTAATGCCGCATGAGTG  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTTTATCTTTAAGGTCACTGAGCTTGAGTAATGCCGCATGAGTG  50

seq1  TCTTAAAGATTTTGCCGGGCTGGAGGAATGGCTCAGTGGTTAAGAGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGATTTTGCCGGGCTGGAGGAATGGCTCAGTGGTTAAGAGCACT  100

seq1  GACTGCTTGTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTGTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGG  150

seq1  CTCACAGCCATCTGTAATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCCATCTGTAATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAA  200

seq1  GACAGCTACAGTGTATTCATACTAAATAAATAAATAAATAAATGACTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTACAGTGTATTCATACTAAATAAATAAATAAATAAATGACTAAA  250

seq1  TAAAAAAATTTAAAAAAAAAAAAAAAAAAGATTTTGCCAATTAAATCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATTTAAAAAAAAAAAAAAAAAAGATTTTGCCAATTAAATCTGA  300

seq1  AGTTCTAGGCTGGATGTGGTGGATCATGCCTTTAATCCCACAATTTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGGCTGGATGTGGTGGATCATGCCTTTAATCCCACAATTTAGAA  350

seq1  GGGGGAATCTCTGTGAACTGGAGGCCAGACTTGTTTATTTACAGAGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAATCTCTGTGAACTGGAGGCCAGACTTGTTTATTTACAGAGTTCC  400

seq1  AGGACTGTATAGTGAGACCACAACTAAAAAAAAAAAGAAAGAAAGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTATAGTGAGACCACAACTAAAAAAAAAAAGAAAGAAAGAAAAA  450

seq1  AAAAAGTAAAGATAGAAAGGAAGGAAAGAGGAAGGGTGGAAAGAGAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAAGATAGAAAGGAAGGAAAGAGGAAGGGTGGAAAGAGAACCC  500

seq1  CATCCCTATATTTGGTGTTTTTTAAGGCAGTTTTCCACTCTGGGCTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTATATTTGGTGTTTTTTAAGGCAGTTTTCCACTCTGGGCTGTGT  550

seq1  AACCTGAAACTTCACTCAGTAGGACTCACAGCAATCTTCCAACCTCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAACTTCACTCAGTAGGACTCACAGCAATCTTCCAACCTCAGTC  600

seq1  TCCTGGGTGCTGTGATTAAAAGAATGAGCCACCATGCCTGCTAATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTGCTGTGATTAAAAGAATGAGCCACCATGCCTGCTAATTTTAA  650

seq1  TTTGAACACTGCTCCTCCTAAGCCCTGAACTGAGACATTAAAAATAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACACTGCTCCTCCTAAGCCCTGAACTGAGACATTAAAAATAGATT  700

seq1  TGGATACAACAGTCTCAACACACAATTTGCTTTAATTAGGTCACTATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACAACAGTCTCAACACACAATTTGCTTTAATTAGGTCACTATATC  750

seq1  ATGAATTC  758
      ||||||||
seq2  ATGAATTC  758

seq1: chr11_77928625_77929121
seq2: B6Ng01-069C03.g_67_563

seq1  GAATTCAGTTGATTAGTCTGAGAAAAGGAAGGTAAAGCGGAGAGGCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGATTAGTCTGAGAAAAGGAAGGTAAAGCGGAGAGGCCTGG  50

seq1  AGAGCATCCTTTTTGTGGTTGGGTGTCTTCCGGTGGTTACTTGGTTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCCTTTTTGTGGTTGGGTGTCTTCCGGTGGTTACTTGGTTTGGA  100

seq1  AGTCAGAAGAAGCGTTTTGGCAGGAAACACCCGGGGGCTGGTCACTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAGAAGCGTTTTGGCAGGAAACACCCGGGGGCTGGTCACTTTTA  150

seq1  GTACCCAGAGTGGGTGGAGGAGCAGGAGAAGTGGCGGGCGGGGCATCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAGAGTGGGTGGAGGAGCAGGAGAAGTGGCGGGCGGGGCATCACC  200

seq1  TGGCCCAGCCGCTGGATGCTTGGCTCCCAGCTTCGTTGTGGGCACCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGCCGCTGGATGCTTGGCTCCCAGCTTCGTTGTGGGCACCAGGA  250

seq1  GAGACGGGGGCAGCGGTAACAAAGAGGAGCCGTGCCGGGGCCGGGGCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGGGGCAGCGGTAACAAAGAGGAGCCGTGCCGGGGCCGGGGCCGC  300

seq1  GGGTAGCTGGCCTATCCCCGGCGGCTGACCTCCCAGTGGGCCTCCCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTGGCCTATCCCCGGCGGCTGACCTCCCAGTGGGCCTCCCCAGT  350

seq1  TGGCTGTTTGGCAAGTCGCTCTGCTGGTTCCTTGGCTCAGGATTGGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTTGGCAAGTCGCTCTGCTGGTTCCTTGGCTCAGGATTGGCTGT  400

seq1  GTAGACAGGAGGGAGCTTGCAAAGAGCAGGGATGGAGTTGAGGGGGCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGGAGGGAGCTTGCAAAGAGCAGGGATGGAGTTGAGGGGGCGGG  450

seq1  GCTGGCTTCCGGCGGTGGAGGGGAGAGAGCCGGAGCCGGCTGGGGGA  497
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTCCGGCGGTGGAGGGGAGAGAGCCGGAGCCGGCTGGGGGA  497