BAC Information

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BAC

Clone NameB6Ng01-069C08
Chromosome11 (Build37)
Map Location 104,952,014 - 104,985,748
singlet/doubletdoublet
Overlap gene4921510J17Rik
Upstream geneCrhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125
Downstream geneMettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069C08.bB6Ng01-069C08.g
ACCDH887538DH887539
length1,0881,089
definitionDH887538|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C08, 5' end.DH887539|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,952,014 - 104,953,112)(104,984,640 - 104,985,748)
sequence
gaattcatttagaaattaaaccttcctcctctttccctttgtgttcctga
cctgaaggggagcccagtgtgagaaccttggtgaagttactgcactcata
ctgaaacattcagacctagaataggaaacatctagaaacactgccaccaa
gtaaagccagaagcctttttagaagtcagtctgtctgtccacagcagatt
acagaccctcccaacccctgtgctagagcagcttttcttgttattttttg
ggagggttttgattcggttggttttgttctttggagatgaggtctgtctt
tgtagcccttgctggcctacaacttcctaggttgacaaggctggctttga
actaacagagatctgcctgcctctgcctcccaagtgctggaactagaggt
gtgcgccaccagtggcttcaaacatttaaatgctacgagaaaagtcagga
catgaatattatggttcctgcctagttgtcaatggtttttccttttttgt
ttttgtttttgagacagaatcttaaactcacgatcctcctacctcagcct
tccaagtactaagattataggtacacatcaccacccctgacaatttaatt
ttaatcttccagaggacctgagttcaattcccagcacccacagcagatgg
ttctcaataccctgtgactccagctgtgggggaccccatgcctctggcct
ctgtcggcaccagcactcacatgcatagacacacacatatacacataagt
ttaaatatattttttaatttaaaaaatgatataaacaaatgagatttggg
gtaggtttttttttttctccctttctagacttaaaaccctaatgaaatgg
tttttaagtactcttcaatcaaaggacctgggtaaaatgctctactttca
gtttcacacactaagaaatcataccacatatattttgaagcaaaaaaaaa
gtcttctaagtcttaacagcctcagttgataggattctggtattcatttc
ctcgtgttcttctgggtacgagggaccccagtgattccacatttactgta
ccccggtagagcctacgtcattcttccgagcccaggtc
gaattcacgtcctctttcgagagcagctcttaatcgctgtgccctctcgc
taacccactaaatgagtttacacaatgtattttgctggcctgtaccaact
cattttccttcggcagttgaagcatctaacatcttttgaaaggagttcgg
aagacgtggtgcaaggtggtcagaatacattgagaactgtgtttcagagg
aatcgaggggccccctagtggacgataaagggcactctcctactaagcgg
atatattcaatgcttggaaaggctaaaggctctccaggggatcgacttgg
atgttagcccagggcagggtagttaatcatttcatgacccagccacccca
accccatcaccctcccaaccccttgttgcaggcggtgccaattctgggcc
atttaatggcgttgctgtggaacaagagctccagggaaggatcttgatgt
cttaattgcttctttttaacttttacagagcatgagcagccttttgtata
aactgatttaataaccttttttgtttttgtttttttcttttaaaaaactt
tttgattctttgtggatttcacagcatgcaatcccactcatctctccttc
cttccatattccctattgccctcacaacctaccctccaaaagaaaacaaa
aaccccatctctctgtcgaatctgcggtgtatcacacagttttactcttt
tactcaaacggcttgcaaatatcattgatctggcttggtacctctggctt
ctgctatactatcaatactggatcctctcttgaattcttttcagatagcc
tattattggcctgtgtcatgggagatcctgcagcttgggttctgcaggac
tgcccctgtttgtagtgtcaaacgacccttactcacaaggaccacagaga
ccgccgccttcactgcaaacgcatgaagattttaatgatctacttgtggg
aattcccttcccacaccaggccaaagaaaaacaaaacaagagaggaccac
cttttaacctttgtaaggggcagattgagcacaggttctatggggtacaa
gtgaccctttcgacttggttggttgaaagtgactaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104952014_104953112
seq2: B6Ng01-069C08.b_43_1130

seq1  GAATTCATTTAGAAATTAAACCTTCCTCCTCTTTCCCTTTGTGTTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAGAAATTAAACCTTCCTCCTCTTTCCCTTTGTGTTCCTGA  50

seq1  CCTGAAGGGGAGCCCAGTGTGAGAACCTTGGTGAAGTTACTGCACTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGGGAGCCCAGTGTGAGAACCTTGGTGAAGTTACTGCACTCATA  100

seq1  CTGAAACATTCAGACCTAGAATAGGAAACATCTAGAAACACTGCCACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACATTCAGACCTAGAATAGGAAACATCTAGAAACACTGCCACCAA  150

seq1  GTAAAGCCAGAAGCCTTTTTAGAAGTCAGTCTGTCTGTCCACAGCAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCCAGAAGCCTTTTTAGAAGTCAGTCTGTCTGTCCACAGCAGATT  200

seq1  ACAGACCCTCCCAACCCCTGTGCTAGAGCAGCTTTTCTTGTTATTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCTCCCAACCCCTGTGCTAGAGCAGCTTTTCTTGTTATTTTTTG  250

seq1  GGAGGGTTTTGATTCGGTTGGTTTTGTTCTTTGGAGATGAGGTCTGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTTTTGATTCGGTTGGTTTTGTTCTTTGGAGATGAGGTCTGTCTT  300

seq1  TGTAGCCCTTGCTGGCCTACAACTTCCTAGGTTGACAAGGCTGGCTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTTGCTGGCCTACAACTTCCTAGGTTGACAAGGCTGGCTTTGA  350

seq1  ACTAACAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAACTAGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAACTAGAGGT  400

seq1  GTGCGCCACCAGTGGCTTCAAACATTTAAATGCTACGAGAAAAGTCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCACCAGTGGCTTCAAACATTTAAATGCTACGAGAAAAGTCAGGA  450

seq1  CATGAATATTATGGTTCCTGCCTAGTTGTCAATGGTTTTTCCTTTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATATTATGGTTCCTGCCTAGTTGTCAATGGTTTTTCCTTTTTTGT  500

seq1  TTTTGTTTTTGAGACAGAATCTTAAACTCACGATCCTCCTACCTCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGAGACAGAATCTTAAACTCACGATCCTCCTACCTCAGCCT  550

seq1  TCCAAGTACTAAGATTATAGGTACACATCACCACCCCTGACAATTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTACTAAGATTATAGGTACACATCACCACCCCTGACAATTTAATT  600

seq1  TTAATCTTCCAGAGGACCTGAGTTCAATTCCCAGCACCCACAGCAGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTCCAGAGGACCTGAGTTCAATTCCCAGCACCCACAGCAGATGG  650

seq1  TTCTCAATACCCTGTGACTCCAGCTGTGGGGGACCCCATGCCTCTGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATACCCTGTGACTCCAGCTGTGGGGGACCCCATGCCTCTGGCCT  700

seq1  CTGTCGGCACCAGCACTCACATGCATAGACACACACATATACACATAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGGCACCAGCACTCACATGCATAGACACACACATATACACATAAGT  750

seq1  TTAAATATATTTTTTAATTTAAAAAATGATATAAACAAATGAGATTTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATATTTTTTAATTTAAAAAATGATATAAACAAATGAGATTTGGG  800

seq1  GTAGGTTTTTTTTTTTCTCCCTTTCTAGACTTAAAACCCTAATGAAATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTTTTTTTTTCTCCCTTTCTAGACTTAAAACCCTAATGAAATGG  850

seq1  TTTTTAAGTACTCTTCAATCAAGGGACCTGGGTAAAATGCTCTACTTCAA  900
      |||||||||||||||||||||| ||||||||||||||||||||||||  |
seq2  TTTTTAAGTACTCTTCAATCAAAGGACCTGGGTAAAATGCTCTACTTTCA  900

seq1  GTTTCAACACACTAAAGAAAACATACCAACATATAATTTGAAGCAAAAAA  950
      ||||| ||||||| |||||| |||||| ||||||| |||||||| |||||
seq2  GTTTC-ACACACT-AAGAAATCATACC-ACATATATTTTGAAGC-AAAAA  946

seq1  AAAAGTCTTCTAAAGTCTTAACAGGCTCAAGTTGATAGGATTCT-GTATT  999
      ||||||||||| |||||||||||| ||| ||||||||||||||| |||||
seq2  AAAAGTCTTCT-AAGTCTTAACAGCCTC-AGTTGATAGGATTCTGGTATT  994

seq1  CATTTCCTCGTGTTCTTCTGGGGTACCGAGGGAACCCCAGTGAGTCCACA  1049
      ||||||||||||||||||| ||||| |||||| |||||||||| ||||||
seq2  CATTTCCTCGTGTTCTTCT-GGGTA-CGAGGG-ACCCCAGTGATTCCACA  1041

seq1  TTTACTGTAACCCCGGGAAGAGCCAACAGTCATCTCCCCGAGCCCAGGTC  1099
      |||||||||  ||| || |||||| || |||||    |||||||||||||
seq2  TTTACTGTA--CCCCGGTAGAGCCTAC-GTCATTCTTCCGAGCCCAGGTC  1088

seq1: chr11_104984640_104985748
seq2: B6Ng01-069C08.g_69_1157 (reverse)

seq1  TACTTAGTCACTATACAAACCAACCAATGTCTGAAAGGGTCACTTGCTAC  50
      |||||||||||| |   |||||||||| ||| |||||||||||||| |||
seq2  TACTTAGTCACTTT--CAACCAACCAA-GTC-GAAAGGGTCACTTG-TAC  45

seq1  ACCAATGAGAACCCTGTTGCTCAAATCTGCCCCTTACAAAGGTATAAAAA  100
       |||   |||| |||| ||||| |||||||||||||||||||| ||||| 
seq2  CCCA--TAGAA-CCTG-TGCTC-AATCTGCCCCTTACAAAGGT-TAAAAG  89

seq1  GTGTGTCCTCTCTTTGTTCTTGGTCTCTCCTCTGGCCTGCGTGCTGGGAG  150
      ||| |||||||| ||||| |||   | | || ||||||| ||| ||||| 
seq2  GTG-GTCCTCTC-TTGTT-TTG--TTTTTCTTTGGCCTG-GTG-TGGGAA  132

seq1  GGGAGTCCCCAACATGTTAGATCAATAAAAATCCTCATGCGTTTTGCAGT  200
      |||| | ||| ||| | |||||| || |||||| ||||||| ||||||||
seq2  GGGAATTCCC-ACAAG-TAGATC-ATTAAAATCTTCATGCG-TTTGCAGT  178

seq1  GATGGCGGCGGTCTCTGTGGTCCTTGTGAGTAAGGGTCGTTTGACACTAC  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCGGCGGTCTCTGTGGTCCTTGTGAGTAAGGGTCGTTTGACACTAC  228

seq1  -AACAGGGGCAGGTCCTGCAGAACCCAAGCTGCAGGATCT-CCATGACAC  298
       |||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  AAACAGGGGCA-GTCCTGCAGAACCCAAGCTGCAGGATCTCCCATGACAC  277

seq1  AGGCCAATAATAGGCTATCTGAAAAGAATTCAAGAGAGGATCCAGTATTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAATAATAGGCTATCTGAAAAGAATTCAAGAGAGGATCCAGTATTG  327

seq1  ATAGTATAGCAGAAGCCAGAGGTACCAAGCCAGATCAATGATATTTGCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATAGCAGAAGCCAGAGGTACCAAGCCAGATCAATGATATTTGCAA  377

seq1  GCCGTTTGAGTAAAAGAGT-AAACTGTGTGATACACCGCAGATTCGACAG  447
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCGTTTGAGTAAAAGAGTAAAACTGTGTGATACACCGCAGATTCGACAG  427

seq1  AGAGATGGGGTTTTTGTTTTCTTTTGGAGGGTAGGTTGTGAGGGCAATAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGGTTTTTGTTTTCTTTTGGAGGGTAGGTTGTGAGGGCAATAG  477

seq1  GGAATATGGAAGGAAGGAGAGATGAGTGGGATTGCATGCTGTGAAATCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATGGAAGGAAGGAGAGATGAGTGGGATTGCATGCTGTGAAATCCA  527

seq1  CAAAGAATCAAAAAGTTTTTTAAAAGAAAAAAACAAAAACAAAAAAGGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATCAAAAAGTTTTTTAAAAGAAAAAAACAAAAACAAAAAAGGTT  577

seq1  ATTAAATCAGTTTATACAAAAGGCTGCTCATGCTCTGTAAAAGTTAAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCAGTTTATACAAAAGGCTGCTCATGCTCTGTAAAAGTTAAAAA  627

seq1  GAAGCAATTAAGACATCAAGATCCTTCCCTGGAGCTCTTGTTCCACAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATTAAGACATCAAGATCCTTCCCTGGAGCTCTTGTTCCACAGCA  677

seq1  ACGCCATTAAATGGCCCAGAATTGGCACCGCCTGCAACAAGGGGTTGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCATTAAATGGCCCAGAATTGGCACCGCCTGCAACAAGGGGTTGGGA  727

seq1  GGGTGATGGGGTTGGGGTGGCTGGGTCATGAAATGATTAACTACCCTGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATGGGGTTGGGGTGGCTGGGTCATGAAATGATTAACTACCCTGCC  777

seq1  CTGGGCTAACATCCAAGTCGATCCCCTGGAGAGCCTTTAGCCTTTCCAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTAACATCCAAGTCGATCCCCTGGAGAGCCTTTAGCCTTTCCAAG  827

seq1  CATTGAATATATCCGCTTAGTAGGAGAGTGCCCTTTATCGTCCACTAGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATATATCCGCTTAGTAGGAGAGTGCCCTTTATCGTCCACTAGGG  877

seq1  GGCCCCTCGATTCCTCTGAAACACAGTTCTCAATGTATTCTGACCACCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTCGATTCCTCTGAAACACAGTTCTCAATGTATTCTGACCACCTT  927

seq1  GCACCACGTCTTCCGAACTCCTTTCAAAAGATGTTAGATGCTTCAACTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACGTCTTCCGAACTCCTTTCAAAAGATGTTAGATGCTTCAACTGC  977

seq1  CGAAGGAAAATGAGTTGGTACAGGCCAGCAAAATACATTGTGTAAACTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGAAAATGAGTTGGTACAGGCCAGCAAAATACATTGTGTAAACTCA  1027

seq1  TTTAGTGGGTTAGCGAGAGGGCACAGCGATTAAGAGCTGCTCTCGAAAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGGGTTAGCGAGAGGGCACAGCGATTAAGAGCTGCTCTCGAAAGA  1077

seq1  GGACGTGAATTC  1109
      ||||||||||||
seq2  GGACGTGAATTC  1089