BAC Information

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BAC

Clone NameB6Ng01-069D05
Chromosome11 (Build37)
Map Location 97,491,425 - 97,640,129
singlet/doubletdoublet
Overlap geneMllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23
Upstream geneSkap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik
Downstream geneLasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069D05.bB6Ng01-069D05.g
ACCDH887578DH887579
length1,141899
definitionDH887578|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D05, 5' end.DH887579|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,491,425 - 97,492,581)(97,639,222 - 97,640,129)
sequence
gaattcagagagacaaactcaaaaccaacgtagaggaaaaagatgaagcc
gagcgtcggtggcttaagagcttggtgtagcaaggagtcgcttgctaaga
gtgtcctgtggtctttgctcagggccggtagaacaggggcctggcactcg
ggaactcaaaagcaaacaaaaacgcttgtagagtgaatgattaggaattc
gctatatatgtgcaagattcataaaagaaaaaaataaatttggagaaagg
ggagcttcgacacacccacggaagacaataagctgactttctctccgtac
ttgtttccttttcttggtgaagtatggaagtgccccacatcttaacggaa
ttccaacgcgctggcaccgttgggagcctccagatcccaggactcgacca
tctggatcctgagcgacctgaatgggtggaaaagaccaaaaaccttactc
tccatccacaaacaaaaagtgaataatttccagaacatgctctgataatg
tacacatctctcacatctcttcccctctagttcctacacagcctgctcat
ttgtgaaactggcttgttccttagtgctgacctctcctcggagtctagaa
agagctggtgccctggctgcacagtcgagcccagcggccagtagagcatc
cagtcttgatcactgctatatccctactgcccaaacggcacaataaacat
ttgtgagtctttgggctattcatcgtcatcctaaaatcaggttagaaaca
gctgcttttcatctgcagaagtacacgagatttatatgttggcttggact
aggggtaggatgagactgagggatacagatttttcttctgagccagggca
aaagaaagctctccctccctcgctgatagggtctcacccaccatgtggcc
tggaactccagcgtctggctttcaccctcccgagtgctacacttaacatg
tacaatcgctttttctgtaccaggacaaatgatgcagcttgcatcctcat
cctcccagcgtgacatagacccactgtttttctaaataacatcaacagac
ttgagaagaaggaatgggaagatggccccccccccaaaaacacaccttct
tgtcaagaaccaaggtaaagctcagtggacttactggatga
gaattcactctgtagaccaggctggtctcggtctcgaactcagaaatact
cctgcctcctaagtgctgggatcaaaggtgtgcgccaccactgctgagcc
aggaacatatttctacttctgtacaaagatggccatttaagggttgttgg
gtgtttgcattattttttttaaaggtttattatttattatatgtaagtag
ctgtcctcagatactccagaagagggcatcagatttctttaaggatggtt
gtgggatttgaactcactcgggaccttcagaagaacagttggcgctctta
accactgagccatctcgccagccctggatgtttacattcttatccttgcc
agtagctgatggaaattttatggtgttgacattctgtggagaggtttttc
tacttagtgactgctgccctttcttttttgtccttagtacatccagcagt
ggtaattcgacaacgaaagtcatatcgaagaaaagatggggtgtttcttt
actttgaagataacgcaggggtcatagtaaacaataaaggagagatgaaa
ggtacgtggaggtttaagccaccattgtatgtttctgctgggtgactcta
gaagagtcacaggacaaggaccctgtctgacctgtcttctcttccaaact
ggctctgctatcacaggtccagtggcaaaggagtgtgcagacttgtggcc
cagaattgcatccaacgcatgcagcttgcatgatttctccagtgtatttg
taaatatattcattaaagtctctgctctgagagctggtcttcttgaccct
tttcaatatcactttgcaaaagaaacttaattttcatttcagggcagact
ttctgaccttgcagacttcttcactttcaggttaagtaaaggcgatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97491425_97492581
seq2: B6Ng01-069D05.b_48_1188

seq1  GAATTCAGAGAGACAAACTCAAAACCAACGTAGAGGAAAAAGATGAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGACAAACTCAAAACCAACGTAGAGGAAAAAGATGAAGCC  50

seq1  GAGCGTCGGTGGCTTAAGAGCTTGGTGTAGCAAGGAGTCGCTTGCTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTCGGTGGCTTAAGAGCTTGGTGTAGCAAGGAGTCGCTTGCTAAGA  100

seq1  GTGTCCTGTGGTCTTTGCTCAGGGCCGGTAGAACAGGGGCCTGGCACTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGTGGTCTTTGCTCAGGGCCGGTAGAACAGGGGCCTGGCACTCG  150

seq1  GGAACTCAAAAGCAAACAAAAACGCTTGTAGAGTGAATGATTAGGAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAAAAGCAAACAAAAACGCTTGTAGAGTGAATGATTAGGAATTC  200

seq1  GCTATATATGTGCAAGATTCATAAAAGAAAAAAATAAATTTGGAGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATATGTGCAAGATTCATAAAAGAAAAAAATAAATTTGGAGAAAGG  250

seq1  GGAGCTTCGACACACCCACGGAAGACAATAAGCTGACTTTCTCTCCGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTCGACACACCCACGGAAGACAATAAGCTGACTTTCTCTCCGTAC  300

seq1  TTGTTTCCTTTTCTTGGTGAAGTATGGAAGTGCCCCACATCTTAACGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTTTTCTTGGTGAAGTATGGAAGTGCCCCACATCTTAACGGAA  350

seq1  TTCCAACGCGCTGGCACCGTTGGGAGCCTCCAGATCCCAGGACTCGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACGCGCTGGCACCGTTGGGAGCCTCCAGATCCCAGGACTCGACCA  400

seq1  TCTGGATCCTGAGCGACCTGAATGGGTGGAAAAGACCAAAAACCTTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATCCTGAGCGACCTGAATGGGTGGAAAAGACCAAAAACCTTACTC  450

seq1  TCCATCCACAAACAAAAAGTGAATAATTTCCAGAACATGCTCTGATAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCACAAACAAAAAGTGAATAATTTCCAGAACATGCTCTGATAATG  500

seq1  TACACATCTCTCACATCTCTTCCCCTCTAGTTCCTACACAGCCTGCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATCTCTCACATCTCTTCCCCTCTAGTTCCTACACAGCCTGCTCAT  550

seq1  TTGTGAAACTGGCTTGTTCCTTAGTGCTGACCTCTCCTCGGAGTCTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAACTGGCTTGTTCCTTAGTGCTGACCTCTCCTCGGAGTCTAGAA  600

seq1  AGAGCTGGTGCCCTGGCTGCACAGTCGAGCCCAGCGGCCAGTAGAGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGTGCCCTGGCTGCACAGTCGAGCCCAGCGGCCAGTAGAGCATC  650

seq1  CAGTCTTGATCACTGCTATATCCCTACTGCCCAAACGGCACAATAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTGATCACTGCTATATCCCTACTGCCCAAACGGCACAATAAACAT  700

seq1  TTGTGAGTCTTTGGGCTATTCATCGTCATCCTAAAATCAGGTTAGAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTCTTTGGGCTATTCATCGTCATCCTAAAATCAGGTTAGAAACA  750

seq1  GCTGCTTTTCATCTGCAGAAGTACACGAGATTTATATGTTGGCTTGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTTCATCTGCAGAAGTACACGAGATTTATATGTTGGCTTGGACT  800

seq1  AGGGGTAGGATGAGACTGAGGGATACAGATTTTTCTTCTGAGCCAGGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTAGGATGAGACTGAGGGATACAGATTTTTCTTCTGAGCCAGGGCA  850

seq1  AAAGAAAGCTCTCCCTCCCTCGCTGATAGGGTCTCACCCACCATGTGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGCTCTCCCTCCCTCGCTGATAGGGTCTCACCCACCATGTGGCC  900

seq1  TGGAACTCCAGCGTCTGGC-TTCACCCTCCCGAGTGCTACACTTAACATG  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGAACTCCAGCGTCTGGCTTTCACCCTCCCGAGTGCTACACTTAACATG  950

seq1  TACAATCGCTTTTTCTGTACCAGGACAAATGATGCAGCTTGCATCCTCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCGCTTTTTCTGTACCAGGACAAATGATGCAGCTTGCATCCTCAT  1000

seq1  CCTCCCAGCGGTGACAATAGACACACTGTTTTTCTAAATAACATCAAACA  1049
      ||||||||| ||||| |||||| ||||||||||||||||||||||||   
seq2  CCTCCCAGC-GTGAC-ATAGACCCACTGTTTTTCTAAATAACATCAA--C  1046

seq1  AGACCTGAGAAGAAAGGGATGGGAGGATGGGCCCCCCCCCCCCCCACACA  1099
      |||| ||||||| |||| |||||| |||||     ||||||||||| | |
seq2  AGACTTGAGAAG-AAGGAATGGGAAGATGG-----CCCCCCCCCCAAAAA  1090

seq1  CACACCCTTTCCTTGGCAGAGACCCAAGGTAAAGCTTCAAAGTGGGACTT  1149
      ||||||   | |||| || ||| |||||||||||||    ||| ||||||
seq2  CACACC---TTCTTGTCA-AGAACCAAGGTAAAGCT---CAGT-GGACTT  1132

seq1  ACT-GATGA  1157
      ||| |||||
seq2  ACTGGATGA  1141

seq1: chr11_97639222_97640129
seq2: B6Ng01-069D05.g_69_967 (reverse)

seq1  AAGATCGCCTTTACTTAACCTGGAAAGTGAAGAAGTTCTGCAAGGTCATG  50
      ||||||||||||||||||||| ||||||||||||| |||||||||||| |
seq2  AAGATCGCCTTTACTTAACCT-GAAAGTGAAGAAG-TCTGCAAGGTCA-G  47

seq1  AAGGTCATGCCCTGAACTGAAATTTAAGTTTCCTTCTGCAAAGCTGATAT  100
      || ||| ||||||||| ||||| |||||||| ||| ||||||| ||||||
seq2  AAAGTC-TGCCCTGAAATGAAAATTAAGTTT-CTTTTGCAAAG-TGATAT  94

seq1  TGGAAAAGGTGTCAAGAAGACCAGCTCTCAGAGCAGAGACTTTAATGAAT  150
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  T-GAAAAGG-GTCAAGAAGACCAGCTCTCAGAGCAGAGACTTTAATGAAT  142

seq1  ATATTTTACAAATACACTGGAG-AATCATGCAATGCTGCCTGCGTTGGAT  199
      ||| |||||||||||||||||| |||||||||| ||||| ||||||||||
seq2  ATA-TTTACAAATACACTGGAGAAATCATGCAA-GCTGCATGCGTTGGAT  190

seq1  GCAATTCTGGGCCACAAGTCTGCACACTCCTTTGCCACTGGACCTGTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCTGGGCCACAAGTCTGCACACTCCTTTGCCACTGGACCTGTGAT  240

seq1  AGCAGAGCCTGTTTGGAAGAGAAGACAGGTCAGACAGGGTCCTTGTCCTG  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCCAGTTTGGAAGAGAAGACAGGTCAGACAGGGTCCTTGTCCTG  290

seq1  TGACTCTTCTAGAGTCACCCAGCAGAAACATACAATGGTGGCTTAAACCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTTCTAGAGTCACCCAGCAGAAACATACAATGGTGGCTTAAACCT  340

seq1  CCACGTACCTTTCATCTCTCCTTTATTGTTTACTATGACCCCTGCGTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTACCTTTCATCTCTCCTTTATTGTTTACTATGACCCCTGCGTTAT  390

seq1  CTTCAAAGTAAAGAAACACCCCATCTTTTCTTCGATATGACTTTCGTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGTAAAGAAACACCCCATCTTTTCTTCGATATGACTTTCGTTGT  440

seq1  CGAATTACCACTGCTGGATGTACTAAGGACAAAAAAGAAAGGGCAGCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTACCACTGCTGGATGTACTAAGGACAAAAAAGAAAGGGCAGCAGT  490

seq1  CACTAAGTAGAAAAACCTCTCCACAGAATGTCAACACCATAAAATTTCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTAGAAAAACCTCTCCACAGAATGTCAACACCATAAAATTTCCA  540

seq1  TCAGCTACTGGCAAGGATAAGAATGTAAACATCCAGGGCTGGCGAGATGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACTGGCAAGGATAAGAATGTAAACATCCAGGGCTGGCGAGATGG  590

seq1  CTCAGTGGTTAAGAGCGCCAACTGTTCTTCTGAAGGTCCCGAGTGAGTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTTAAGAGCGCCAACTGTTCTTCTGAAGGTCCCGAGTGAGTTC  640

seq1  AAATCCCACAACCATCCTTAAAGAAATCTGATGCCCTCTTCTGGAGTATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCACAACCATCCTTAAAGAAATCTGATGCCCTCTTCTGGAGTATC  690

seq1  TGAGGACAGCTACTTACATATAATAAATAATAAACCTTTAAAAAAAATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAGCTACTTACATATAATAAATAATAAACCTTTAAAAAAAATAA  740

seq1  TGCAAACACCCAACAACCCTTAAATGGCCATCTTTGTACAGAAGTAGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACACCCAACAACCCTTAAATGGCCATCTTTGTACAGAAGTAGAAA  790

seq1  TATGTTCCTGGCTCAGCAGTGGTGGCGCACACCTTTGATCCCAGCACTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCCTGGCTCAGCAGTGGTGGCGCACACCTTTGATCCCAGCACTTA  840

seq1  GGAGGCAGGAGTATTTCTGAGTTCGAGACCGAGACCAGCCTGGTCTACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGAGTATTTCTGAGTTCGAGACCGAGACCAGCCTGGTCTACAG  890

seq1  AGTGAATTC  908
      |||||||||
seq2  AGTGAATTC  899