BAC Information

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BAC

Clone NameB6Ng01-070E20
Chromosome11 (Build37)
Map Location 51,009,885 - 51,141,328
singlet/doubletdoublet
Overlap gene5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
Upstream gene3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1
Downstream geneAgxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070E20.bB6Ng01-070E20.g
ACCDH888345DH888346
length504972
definitionDH888345|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E20, 5' end.DH888346|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,140,819 - 51,141,328)(51,009,885 - 51,010,836)
sequence
caggctagcgaaggctacagagtaagattctgtctcacccccctctccaa
atttcactttagttttgtgcaatatgtccctctcttgatatttagtaagc
acagcaagtcgcagtccctagacatccccgtgacaacaaggggcgtgcta
gatggcctaggttgctaactaagtccttgatagcccagacttctccatgt
ttgccatttctggcatttcttctgttcatcttactgttaaccatgctttc
aaggtagtgttgagtactctgtaaatagatgcatcataggaaaatggcac
ccttagattttcttctaggggggcgcatatcatatttttctccattctcc
tcttatgtgtctagttttccttattctgtgatgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgcgcccatactgctggacattcctag
gcccccaacatgctgacaagcactttacaacagggctgtatccccagctc
tttt
gaattctcacatacactagcttttgttgcacaaacttcactcccccagtt
acttgttcagtctaaagcctataatttggcagtagagagagataggcagg
acttcctgtgaaggagtgaggaattctgggaagaagaaagaggaagggcc
tttcaccaggagacatgagaagggatggacatgtctacagggctggaagg
tatctctaaccacgtggctggacggctaagtggcctgctttagagtctgc
cctgctaaggcctaagctttgaagtatcaaaaggtctctggttacttggg
ggtactaactggttaaggagtaactgccaccatattaatttccaccatta
gttaatgtgtacagaatgttaataattgtttttactcacatacttgggac
cagtgatgcttaggcaagggaggaataggaaacaactaaatggtgcacaa
ttgacaacatgacaggacacagcataaacctttcaggaactccaaatatt
aaggttctcagtttcttgccccaaagatagagacctgcatcatgaactaa
aggggaggcctcatctatctgttgtttcctagaaactcgcctcatcaaaa
aagataagaactactttagggtgaaaacatagaaaaattaactctagaca
aatgggactagaagacaagtaggagctgctgttttcatatatggcaaaag
ggacttgaagccacaactaggaagaagaagtaaaggtccctcatgctggt
taagagagcaatccatcaagaggacagaagagaatacgattttaattgta
aactgattgagccttgtgcaccgaatttcacaaaggaaatattacagaaa
aaagttacagatttaccccagtgaaatcaaagtggcaaattttaatacaa
catcatcatgtgactagtcatccaggtgtaaaatatgcaaacatctgact
taaatgacatcgaggatcaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51140819_51141328
seq2: B6Ng01-070E20.b_47_556 (reverse)

seq1  AAAAGAGCTGGGGATACAGCCCTGTTGTAAAGTGCTTGTCAGCATGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCTGGGGATACAGCCCTGTTGTAAAGTGCTTGTCAGCATGTTGG  50

seq1  GGGCCTAGGAATGTCCAGCACTATAGGCACACACACACACACACACACAC  100
      |||||||||||||||||||| ||| ||| |||||||||||||||||||||
seq2  GGGCCTAGGAATGTCCAGCAGTATGGGCGCACACACACACACACACACAC  100

seq1  ACACACACACACACACACACACATCACAGAATAAGGAAAACTAGACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACATCACAGAATAAGGAAAACTAGACACAT  150

seq1  AAGAGGAGAATGGAGAAAAATATGATATGCGCCCCCCTAGAAGAAAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGAATGGAGAAAAATATGATATGCGCCCCCCTAGAAGAAAATCT  200

seq1  AAGGGTGCCATTTTCCTATGATGCATCTATTTACAGAGTACTCAACACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGCCATTTTCCTATGATGCATCTATTTACAGAGTACTCAACACTA  250

seq1  CCTTGAAAGCATGGTTAACAGTAAGATGAACAGAAGAAATGCCAGAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAAGCATGGTTAACAGTAAGATGAACAGAAGAAATGCCAGAAATG  300

seq1  GCAAACATGGAGAAGTCTGGGCTATCAAGGACTTAGTTAGCAACCTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACATGGAGAAGTCTGGGCTATCAAGGACTTAGTTAGCAACCTAGGC  350

seq1  CATCTAGCACGCCCCTTGTTGTCACGGGGATGTCTAGGGACTGCGACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGCACGCCCCTTGTTGTCACGGGGATGTCTAGGGACTGCGACTTG  400

seq1  CTGTGCTTACTAAATATCAAGAGAGGGACATATTGCACAAAACTAAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTACTAAATATCAAGAGAGGGACATATTGCACAAAACTAAAGTG  450

seq1  AAATTTGGAGAGGGGGGTGAGACAGAATCTTACTCTGTAGCCTTCGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGAGAGGGGGGTGAGACAGAATCTTACTCTGTAGCCTTCGCTAG  500

seq1  CCTGGAATTC  510
      ||||||||||
seq2  CCTGGAATTC  510

seq1: chr11_51009885_51010836
seq2: B6Ng01-070E20.g_66_1017

seq1  GAATTCTCACATACACTAGCTTTTGTTGCACAAACTTCACTCCCCCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACATACACTAGCTTTTGTTGCACAAACTTCACTCCCCCAGTT  50

seq1  ACTTGTTCAGTCTAAAGCCTATAATTTGGCAGTAGAGAGAGATAGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTCAGTCTAAAGCCTATAATTTGGCAGTAGAGAGAGATAGGCAGG  100

seq1  ACTTCCTGTGAAGGAGTGAGGAATTCTGGGAAGAAGAAAGAGGAAGGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGTGAAGGAGTGAGGAATTCTGGGAAGAAGAAAGAGGAAGGGCC  150

seq1  TTTCACCAGGAGACATGAGAAGGGATGGACATGTCTACAGGGCTGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCAGGAGACATGAGAAGGGATGGACATGTCTACAGGGCTGGAAGG  200

seq1  TATCTCTAACCACGTGGCTGGACGGCTAAGTGGCCTGCTTTAGAGTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTAACCACGTGGCTGGACGGCTAAGTGGCCTGCTTTAGAGTCTGC  250

seq1  CCTGCTAAGGCCTAAGCTTTGAAGTATCAAAAGGTCTCTGGTTACTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAAGGCCTAAGCTTTGAAGTATCAAAAGGTCTCTGGTTACTTGGG  300

seq1  GGTACTAACTGGTTAAGGAGTAACTGCCACCATATTAATTTCCACCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAACTGGTTAAGGAGTAACTGCCACCATATTAATTTCCACCATTA  350

seq1  GTTAATGTGTACAGAATGTTAATAATTGTTTTTACTCACATACTTGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTGTACAGAATGTTAATAATTGTTTTTACTCACATACTTGGGAC  400

seq1  CAGTGATGCTTAGGCAAGGGAGGAATAGGAAACAACTAAATGGTGCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGCTTAGGCAAGGGAGGAATAGGAAACAACTAAATGGTGCACAA  450

seq1  TTGACAACATGACAGGACACAGCATAAACCTTTCAGGAACTCCAAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAACATGACAGGACACAGCATAAACCTTTCAGGAACTCCAAATATT  500

seq1  AAGGTTCTCAGTTTCTTGCCCCAAAGATAGAGACCTGCATCATGAACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTCAGTTTCTTGCCCCAAAGATAGAGACCTGCATCATGAACTAA  550

seq1  AGGGGAGGCCTCATCTATCTGTTGTTTCCTAGAAACTCGCCTCATCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGCCTCATCTATCTGTTGTTTCCTAGAAACTCGCCTCATCAAAA  600

seq1  AAGATAAGAACTACTTTAGGGTGAAAACATAGAAAAATTAACTCTAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGAACTACTTTAGGGTGAAAACATAGAAAAATTAACTCTAGACA  650

seq1  AATGGGACTAGAAGACAAGTAGGAGCTGCTGTTTTCATATATGGCAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGACTAGAAGACAAGTAGGAGCTGCTGTTTTCATATATGGCAAAAG  700

seq1  GGACTTGAAGCCACAACTAGGAAGAAGAAGTAAAGGTCCCTCATGCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGAAGCCACAACTAGGAAGAAGAAGTAAAGGTCCCTCATGCTGGT  750

seq1  TAAGAGAGCAATCCATCAAGAGGACAGAAGAGAATACGATTTTAATTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGCAATCCATCAAGAGGACAGAAGAGAATACGATTTTAATTGTA  800

seq1  AACTGATTGAGCCTTGTGCACCGAATTTCACAAAGGAAATATTACAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTGAGCCTTGTGCACCGAATTTCACAAAGGAAATATTACAGAAA  850

seq1  AAAGTTACAGATTTACCCCAGTGAAATCAAAGTGGCAAATTTTAATACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACAGATTTACCCCAGTGAAATCAAAGTGGCAAATTTTAATACAA  900

seq1  CATCATCAGGTGACTAGTCATCCAGGTGTAAAATATGCAAACATCTGACT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCATGTGACTAGTCATCCAGGTGTAAAATATGCAAACATCTGACT  950

seq1  TA  952
      ||
seq2  TA  952