BAC Information

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BAC

Clone NameB6Ng01-070P08
Chromosome11 (Build37)
Map Location 114,587,862 - 114,719,524
singlet/doubletdoublet
Overlap geneDnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c
Upstream geneCdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2
Downstream geneCd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070P08.bB6Ng01-070P08.g
ACCDH888796DH888797
length1,110937
definitionDH888796|Mus musculus domesticus DNA, BAC clone: B6Ng01-070P08, 5' end.DH888797|Mus musculus domesticus DNA, BAC clone: B6Ng01-070P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,718,391 - 114,719,524)(114,587,862 - 114,588,804)
sequence
gaattcaagttacaggtgactgtgagcagccatgttggtgctgggaattg
aatgggtcctctgggaaagtcaccaatcctcttagccactgaaccatccc
atcataataacgtctttcttctttgtcttatttatttatttatttattta
tttattgaaaatttcaagtgatagcctgcagtagctgcaaatatgtgtca
atccccctgcctcaattccaaagtgctgggattacagcactttggccatc
ccagcttttgccctttaaaaaaatttcaaggttcagcatggtggcacaca
cctgtaatcacagcacttggtaggtgaaggcaggaagatcaggagtccag
attcttagctatacaataaacgagatatcagtctgagccataagaaatcc
tgtctcaaaaaggaggggactgaagagctggctcagtcggtaagagcaga
acatgctcttaccgaggacatgggttgggtttccagcacccacatagcat
ctcacaatcctctgtaactctagttcctgtggtctaatgcccccttctgg
cctccatagttcatggtgcatataaactcccatgggcacacacataaaaa
tagtaaaataaaaattcatgtagcctcaggcatctatttcctggcttttc
ctcagctacctttaactcctaaaagaatatgagtacttaaataagtatag
agctgtttccctaaataagtaccatttttaaagctagttgctctccattt
ctaatgcaaaagttcacggtccctgcaccgagactgtgtattggtaaatc
aataagtgtcactggtctttacaagtactgggaagagaatgtccacagga
attaatagggaaggaaccatgcccagccatccgagaataagtcataggta
acaagatcaaggatcctaatatccgtgtttcagtaaacagacacagctag
aatgtgagtacacccacaaattagatggaccctgagaacaccaagagcat
cagcccttgggaggtttctcaccccacctcctggcagtagttatgaaagc
gatgggagcgggaataactgcagacagtgttgctagcttatgtgaggccc
tagttcagtc
gaattcagttctctccttcaccatgtgtgtctggggctcaaccctaggtc
atagaagtggtagcaagcccctttctctactgagccatctcaccagtcct
agatataggactctacctcccttctttaattctttttaaattattgatga
tgatgatgattgtgggtgtgctacatgacacagatcagaggacaactttg
tggaatccattttttcccccatttttatgtgggttctaggatgtgaactc
tgcttgtcaggcttacccaacaaagtgccttgtactcagcctgtccatca
atccctcccacattttctcacttccttgcctcaagctcatgagaaacaca
tctctctttgtgtcattcatgtgtccatcagctagctcattcattcatgc
aatgaaaccatatttacaacgtgccagccgcatagctaagccatgcttgc
atgcattgagcctgaccctcaaggaatttccattccagagatgaattcag
aagggtggtggtgcaagggatacgttaacagaagagacccggacattgta
gcagtgacaaatcagacatgatccgaactgacccaggtgcggggcttccc
acgctctggtcactttgattgcgttttcgggggatacgggagtgggggag
ggactttgctgggtatagactgtagacttgggtaggcattttggcaaagc
tttggttaactttcctccacctcttccgcagacctcctccagagaaggaa
ggagagaagggggtgcttccgactagcgggaccagagtcacgtgctccag
atcgccttccgaactgtcggcgtctcggcccgtcagggttgctaggcact
ggtaaactccgcagtttccagccgttaagctgcgctggagctgggactgg
cttgggcgcttctctggctgtgtgggagaggtgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114718391_114719524
seq2: B6Ng01-070P08.b_45_1154 (reverse)

seq1  GACTGAACCTAGGGCCCTCACATAGGCTAGGCAAACACTGTCCTGCCAGG  50
      ||||||| |||||| ||||||||| |||||   |||||||| ||||   |
seq2  GACTGAA-CTAGGG-CCTCACATAAGCTAG--CAACACTGT-CTGC--AG  43

seq1  TTATGTCCCGCTCCCAATCGCTTTCCATAAACTACTGGCCCAGGGAGGTG  100
      |||| |||||||||| |||||||| ||| ||||||||  ||| |||||||
seq2  TTAT-TCCCGCTCCC-ATCGCTTT-CAT-AACTACTG--CCA-GGAGGTG  86

seq1  GGGTGAGAAACCCTCCCAAGGGCTGATGCTTCTTGGTTGTTCTCAGGGTT  150
      |||||||||| |||||||||||||||||| |||||| ||||||||||| |
seq2  GGGTGAGAAA-CCTCCCAAGGGCTGATGC-TCTTGG-TGTTCTCAGGG-T  132

seq1  CCATTCTAAATTTGTGGGTGTACCTCACATTCTAGCTGTTGTCTGTTTAC  200
      ||| ||| |||||||||||||| ||||||||||||||| |||||||||||
seq2  CCA-TCT-AATTTGTGGGTGTA-CTCACATTCTAGCTG-TGTCTGTTTAC  178

seq1  TGAAACACCGGATATTTAGGATCCTTGATCTTGTTACCTATGACTTATTC  250
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  TGAAACA-CGGATA-TTAGGATCCTTGATCTTGTTACCTATGACTTATTC  226

seq1  TCGGATGGCTGGGCATGGTTCCTTCCCTATTAATTCCTGTGGACATTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATGGCTGGGCATGGTTCCTTCCCTATTAATTCCTGTGGACATTCTC  276

seq1  TTCCCAGTACTTGTAAAGACCAGTGACACTTATTGATTTACCAATACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTACTTGTAAAGACCAGTGACACTTATTGATTTACCAATACACA  326

seq1  GTCTCGGTGCAGGGACCGTGAACTTTTGCATTAGAAATGGAGAGCAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGGTGCAGGGACCGTGAACTTTTGCATTAGAAATGGAGAGCAACTA  376

seq1  GCTTTAAAAATGGTACTTATTTAGGGAAACAGCTCTATACTTATTTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAAATGGTACTTATTTAGGGAAACAGCTCTATACTTATTTAAGT  426

seq1  ACTCATATTCTTTTAGGAGTTAAAGGTAGCTGAGGAAAAGCCAGGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATATTCTTTTAGGAGTTAAAGGTAGCTGAGGAAAAGCCAGGAAATA  476

seq1  GATGCCTGAGGCTACATGAATTTTTATTTTACTATTTTTATGTGTGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTGAGGCTACATGAATTTTTATTTTACTATTTTTATGTGTGTGCC  526

seq1  CATGGGAGTTTATATGCACCATGAACTATGGAGGCCAGAAGGGGGCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGTTTATATGCACCATGAACTATGGAGGCCAGAAGGGGGCATTA  576

seq1  GACCACAGGAACTAGAGTTACAGAGGATTGTGAGATGCTATGTGGGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGGAACTAGAGTTACAGAGGATTGTGAGATGCTATGTGGGTGCT  626

seq1  GGAAACCCAACCCATGTCCTCGGTAAGAGCATGTTCTGCTCTTACCGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCAACCCATGTCCTCGGTAAGAGCATGTTCTGCTCTTACCGACT  676

seq1  GAGCCAGCTCTTCAGTCCCCTCCTTTTTGAGACAGGATTTCTTATGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCTCTTCAGTCCCCTCCTTTTTGAGACAGGATTTCTTATGGCTC  726

seq1  AGACTGATATCTCGTTTATTGTATAGCTAAGAATCTGGACTCCTGATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATATCTCGTTTATTGTATAGCTAAGAATCTGGACTCCTGATCTT  776

seq1  CCTGCCTTCACCTACCAAGTGCTGTGATTACAGGTGTGTGCCACCATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTCACCTACCAAGTGCTGTGATTACAGGTGTGTGCCACCATGCT  826

seq1  GAACCTTGAAATTTTTTTAAAGGGCAAAAGCTGGGATGGCCAAAGTGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTGAAATTTTTTTAAAGGGCAAAAGCTGGGATGGCCAAAGTGCTG  876

seq1  TAATCCCAGCACTTTGGAATTGAGGCAGGGGGATTGACACATATTTGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTTTGGAATTGAGGCAGGGGGATTGACACATATTTGCAG  926

seq1  CTACTGCAGGCTATCACTTGAAATTTTCAATAAATAAATAAATAAATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCAGGCTATCACTTGAAATTTTCAATAAATAAATAAATAAATAAA  976

seq1  TAAATAAGACAAAGAAGAAAGACGTTATTATGATGGGATGGTTCAGTGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGACAAAGAAGAAAGACGTTATTATGATGGGATGGTTCAGTGGC  1026

seq1  TAAGAGGATTGGTGACTTTCCCAGAGGACCCATTCAATTCCCAGCACCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGATTGGTGACTTTCCCAGAGGACCCATTCAATTCCCAGCACCAA  1076

seq1  CATGGCTGCTCACAGTCACCTGTAACTTGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  CATGGCTGCTCACAGTCACCTGTAACTTGAATTC  1110

seq1: chr11_114587862_114588804
seq2: B6Ng01-070P08.g_68_1003

seq1  GAATTCAGTTCTCTCCTTCACCATGTGTGTCTGGGGCTCAACCCTAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCTCCTTCACCATGTGTGTCTGGGGCTCAACCCTAGGTC  50

seq1  ATAGAAGTGGTAGCAAGCCCCTTTCTCTACTGAGCCATCTCACCAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTGGTAGCAAGCCCCTTTCTCTACTGAGCCATCTCACCAGTCCT  100

seq1  AGATATAGGACTCTACCTCCCTTCTTTAATTCTTTTTAAATTATTGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGGACTCTACCTCCCTTCTTTAATTCTTTTTAAATTATTGATGA  150

seq1  TGATGATGATTGTGGGTGTGCTACATGACACAGATCAGAGGACAACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGATTGTGGGTGTGCTACATGACACAGATCAGAGGACAACTTTG  200

seq1  TGGAATCCATTTTTTCCCCCATTTTTATGTGGGTTCTAGGATGTGAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCATTTTTTCCCCCATTTTTATGTGGGTTCTAGGATGTGAACTC  250

seq1  TGCTTGTCAGGCTTACCCAACAAAGTGCCTTGTACTCAGCCTGTCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCAGGCTTACCCAACAAAGTGCCTTGTACTCAGCCTGTCCATCA  300

seq1  ATCCCTCCCACATTTTCTCACTTCCTTGCCTCAAGCTCATGAGAAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCCACATTTTCTCACTTCCTTGCCTCAAGCTCATGAGAAACACA  350

seq1  TCTCTCTTTGTGTCATTCATGTGTCCATCAGCTAGCTCATTCATTCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTGTGTCATTCATGTGTCCATCAGCTAGCTCATTCATTCATGC  400

seq1  AATGAAACCATATTTACAACGTGCCAGCCGCATAGCTAAGCCATGCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACCATATTTACAACGTGCCAGCCGCATAGCTAAGCCATGCTTGC  450

seq1  ATGCATTGAGCCTGACCCTCAAGGAATTTCCATTCCAGAGATGAATTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGAGCCTGACCCTCAAGGAATTTCCATTCCAGAGATGAATTCAG  500

seq1  AAGGGTGGTGGTGCAAGGGATACGTTAACAGAAGAGACCCGGACATTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGTGGTGCAAGGGATACGTTAACAGAAGAGACCCGGACATTGTA  550

seq1  GCAGTGACAAATCAGACATGATCCGAACTGACCCAGGTGCGGGGCTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACAAATCAGACATGATCCGAACTGACCCAGGTGCGGGGCTTCCC  600

seq1  ACGCTCTGGTCACTTTGATTGCGTTTTCGGGGGATACGGGAGTGGGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCTGGTCACTTTGATTGCGTTTTCGGGGGATACGGGAGTGGGGGAG  650

seq1  GGACTTTGCTGGGTATAGACTGTAGACTTGGGTAGGCATTTTGGCAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGCTGGGTATAGACTGTAGACTTGGGTAGGCATTTTGGCAAAGC  700

seq1  TTTGGTTAACTTTCCTCCACCTCTTCCGCAGACCTCCTCCAGAGAAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAACTTTCCTCCACCTCTTCCGCAGACCTCCTCCAGAGAAGGAA  750

seq1  GGAGAGAAGGGGGTGCTTCCGACTAGCGGGACCAGAGTCACGTGCTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGGGGGTGCTTCCGACTAGCGGGACCAGAGTCACGTGCTCCAG  800

seq1  ATCGCCTTCCGAACTGCCGGCGTCTCGGCCCGGCCAGGGTTGCTAGGCAA  850
      |||||||||||||||| |||||||||||||| | |||||||||||||| |
seq2  ATCGCCTTCCGAACTGTCGGCGTCTCGGCCC-GTCAGGGTTGCTAGGC-A  848

seq1  CTGGTAAACTCCGCAGCTCCCAGCCGTTTAAGCTGCGCTGGAGCTGGGAC  900
      |||||||||||||||| | ||||||| |||||||||||||||||||||||
seq2  CTGGTAAACTCCGCAGTTTCCAGCCG-TTAAGCTGCGCTGGAGCTGGGAC  897

seq1  TGGTCTTGGGCGCTTCTCCTGGGCTGTGTGGCAGGAGGTGAGC  943
      ||| ||||||||||||||   |||||||||| | |||||||||
seq2  TGG-CTTGGGCGCTTCTC--TGGCTGTGTGGGA-GAGGTGAGC  936