BAC Information

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BAC

Clone NameB6Ng01-071F07
Chromosome11 (Build37)
Map Location 38,968,767 - 39,111,574
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071F07.bB6Ng01-071F07.g
ACCDH889061DH889062
length1,176814
definitionDH889061|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F07, 5' end.DH889062|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,110,389 - 39,111,574)(38,968,767 - 38,969,466)
sequence
gaattcatcttgaacactcactcatgcagcatgctgttttagaagaaatt
tttaaagtaacaaatatgttatccaggaaatttggttctccataaaaccc
tctatgtgccttgggaaaggctgaaatctgagaactggagggaaaaaatg
ctttgacttggtaatgatgagcacctagggtgattggcatctcccaaaga
aaggctaacaatgcaggtggaacagttagaaggttttcagaaaaccactt
agctcaatgttaatcgtttgaaaacttgaactgaagctattggtttcccc
caatgacaagaaatctgaaataataatccaactgattgactgagaacacc
cattccattccttatctctttcacctcattttaaagtctatggaagctta
ccctcttatccttcgatggggatataatctctgatgtgagacccaagggc
aaataaacattgctaagccactgttaggaatacaaatgtatacaatgaaa
gcgtgagttacggtcaagatgagaagatatagagcttgaacaatgtacat
ttcaaaagactattttacctctttggcatttagggcaggggggaaccatg
atgttattgattaaaacttcctctctcttagttctttcagaatgacctaa
aaagtgaaatctggaatctgagctctcattttagcagttgctatctaaaa
cctcataacacaatatgcacatggcatctttgaggataatggagatcata
ttaatatcacatttgtgctaacatcaaatgatggaaagtcagcaggcctg
acataaatagacctgttgcttgaatatggagactttctctattgtttgca
ttacagccaggcactatataaccatgttttggtcaaccaggtctcacatt
tgtaatgagtatctcataagattatatcatcgaatgatgtcatggccatt
ctattttatgtaagtggactagattgtgtgtacctaaaaccaaaattgcc
ttgaaatattgatgtttcctgccattaaatgatacagcactacttatcaa
tactgtcattagcaaaatacacttaggggaaaaaataaagctctatgacc
tagtgagtcattgaaattaacccactttagttcttggagctcaatgcatc
tggaacaagactgacctattgataaa
gaattcaagaaggttaacaagcaaaaggtgcctccatcccacctgggaag
gagaagaaagcaatcacaggaggggggcagagggagagagaaaccttggg
tcagagaggggacatggaggagaaaagaggaacatgatcaggtatggggt
ggggggacaggagtgaagctctgagggctggcagaaagaatggaaacagg
ccttattaggaagtaggaactggggtgaagggatgttctagaatgtacca
gagacctgggaggtgagcgaagctcaggactaaaagggagggaccttaga
tgaaaggtccaatagcagggagagggaacttgtagaatctaccaccaata
gaaaaagaaggcatcaggtggagggatggggttgccatcccacagtcaac
aactctgatccagaattattcctctctaaaaaaattgcagggacaacaat
ggagaacagactgagggaaaggaagctcagtgaccagcccaatcaggatg
gaagggaagctccaaggcctgacacgactactgatggtgtgtttacaggt
aggagcccagcctgggtgccctctgagatgcccaacaagcagccgaaaat
gtcttgccttttttggtgactatgtgcatgaagacatatttagaaatgta
agaaatataaaatctagtgatgtcaagagcttcaaaatgactattctagc
ttacagaagctcaccgagttgtttagcgcactttggttctaaatgtgttt
cctatgccgtgtttgttagatttattttattgttttcaagctttttataa
tgacgatttatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39110389_39111574
seq2: B6Ng01-071F07.b_46_1221 (reverse)

seq1  TTTATCAATAAGTCAGTCTTTGTTCAGATGCAATTTGAGCT-CAAGAACT  49
      |||||||||| |||||||||  | ||||||||  ||||||| ||||||||
seq2  TTTATCAATAGGTCAGTCTTGTTCCAGATGCA--TTGAGCTCCAAGAACT  48

seq1  AAAAGGTGAGTATAATTTCAATGACTCACTTAGGTCATAGAGCTTTTATT  99
      |||  ||| || ||||||||||||||||| ||||||||||||| ||||||
seq2  AAA--GTGGGT-TAATTTCAATGACTCAC-TAGGTCATAGAGC-TTTATT  93

seq1  TTTTTCCTCCTAAGTTGTATTTTGCTAATGACAGTATTGATAAGTAGTGC  149
      ||||  | |||||| |||||||||||||||||||||||||||||||||||
seq2  TTTT--CCCCTAAG-TGTATTTTGCTAATGACAGTATTGATAAGTAGTGC  140

seq1  TGTATCATTTAATGGCAGGAAAACATCAATATTTCAAGGCAATTTTGGTT  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTATCATTTAATGGCAGG-AAACATCAATATTTCAAGGCAATTTTGGTT  189

seq1  TTAGGTACACACAATCTAGTCCACTTACATAAAATAGAATGGCCATGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTACACACAATCTAGTCCACTTACATAAAATAGAATGGCCATGACA  239

seq1  TCATTCGATGATATAATCTTATGAGATACTCATTACAAATGTGAGACCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCGATGATATAATCTTATGAGATACTCATTACAAATGTGAGACCTG  289

seq1  GTTGACCAAAACATGGTTATATAGTGCCTGGCTGTAATGCAAACAATAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCAAAACATGGTTATATAGTGCCTGGCTGTAATGCAAACAATAGA  339

seq1  GAAAGTCTCCATATTCAAGCAACAGGTCTATTTATGTCAGGCCTGCTGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTCCATATTCAAGCAACAGGTCTATTTATGTCAGGCCTGCTGAC  389

seq1  TTTCCATCATTTGATGTTAGCACAAATGTGATATTAATATGATCTCCATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCATTTGATGTTAGCACAAATGTGATATTAATATGATCTCCATT  439

seq1  ATCCTCAAAGATGCCATGTGCATATTGTGTTATGAGGTTTTAGATAGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAAAGATGCCATGTGCATATTGTGTTATGAGGTTTTAGATAGCAA  489

seq1  CTGCTAAAATGAGAGCTCAGATTCCAGATTTCACTTTTTAGGTCATTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAAATGAGAGCTCAGATTCCAGATTTCACTTTTTAGGTCATTCTG  539

seq1  AAAGAACTAAGAGAGAGGAAGTTTTAATCAATAACATCATGGTTCCCCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTAAGAGAGAGGAAGTTTTAATCAATAACATCATGGTTCCCCCC  589

seq1  TGCCCTAAATGCCAAAGAGGTAAAATAGTCTTTTGAAATGTACATTGTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAAATGCCAAAGAGGTAAAATAGTCTTTTGAAATGTACATTGTTC  639

seq1  AAGCTCTATATCTTCTCATCTTGACCGTAACTCACGCTTTCATTGTATAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTATATCTTCTCATCTTGACCGTAACTCACGCTTTCATTGTATAC  689

seq1  ATTTGTATTCCTAACAGTGGCTTAGCAATGTTTATTTGCCCTTGGGTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATTCCTAACAGTGGCTTAGCAATGTTTATTTGCCCTTGGGTCTC  739

seq1  ACATCAGAGATTATATCCCCATCGAAGGATAAGAGGGTAAGCTTCCATAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAGATTATATCCCCATCGAAGGATAAGAGGGTAAGCTTCCATAG  789

seq1  ACTTTAAAATGAGGTGAAAGAGATAAGGAATGGAATGGGTGTTCTCAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAATGAGGTGAAAGAGATAAGGAATGGAATGGGTGTTCTCAGTC  839

seq1  AATCAGTTGGATTATTATTTCAGATTTCTTGTCATTGGGGGAAACCAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTTGGATTATTATTTCAGATTTCTTGTCATTGGGGGAAACCAATA  889

seq1  GCTTCAGTTCAAGTTTTCAAACGATTAACATTGAGCTAAGTGGTTTTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTTCAAGTTTTCAAACGATTAACATTGAGCTAAGTGGTTTTCTG  939

seq1  AAAACCTTCTAACTGTTCCACCTGCATTGTTAGCCTTTCTTTGGGAGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTCTAACTGTTCCACCTGCATTGTTAGCCTTTCTTTGGGAGATG  989

seq1  CCAATCACCCTAGGTGCTCATCATTACCAAGTCAAAGCATTTTTTCCCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCACCCTAGGTGCTCATCATTACCAAGTCAAAGCATTTTTTCCCTC  1039

seq1  CAGTTCTCAGATTTCAGCCTTTCCCAAGGCACATAGAGGGTTTTATGGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCAGATTTCAGCCTTTCCCAAGGCACATAGAGGGTTTTATGGAG  1089

seq1  AACCAAATTTCCTGGATAACATATTTGTTACTTTAAAAATTTCTTCTAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATTTCCTGGATAACATATTTGTTACTTTAAAAATTTCTTCTAAA  1139

seq1  ACAGCATGCTGCATGAGTGAGTGTTCAAGATGAATTC  1186
      |||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGCTGCATGAGTGAGTGTTCAAGATGAATTC  1176

seq1: chr11_38968767_38969466
seq2: B6Ng01-071F07.g_179_879

seq1  ATGGAGGAGAAAAGAGGAACATGATCAGGTATGGGGTGGGGGGACAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGAAAAGAGGAACATGATCAGGTATGGGGTGGGGGGACAGGAG  50

seq1  TGAAGCTCTGAGGGCTGGCAGAAAGAATGGAAACAGGCCTTATTAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCTGAGGGCTGGCAGAAAGAATGGAAACAGGCCTTATTAGGAAG  100

seq1  TAGGAACTGGGGTGAAGGGATGTTCTAGAATGTACCAGAGACCTGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTGGGGTGAAGGGATGTTCTAGAATGTACCAGAGACCTGGGAGG  150

seq1  TGAGCGAAGCTCAGGACTAAAAGGGAGGGACCTTAGATGAAAGGTCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGAAGCTCAGGACTAAAAGGGAGGGACCTTAGATGAAAGGTCCAAT  200

seq1  AGCAGGGAGAGGGAACTTGTAGAATCTACCACCAATAGAAAAAGAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAGAGGGAACTTGTAGAATCTACCACCAATAGAAAAAGAAGGCA  250

seq1  TCAGGTGGAGGGATGGGGTTGCCATCCCACAGTCAACAACTCTGATCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGAGGGATGGGGTTGCCATCCCACAGTCAACAACTCTGATCCAG  300

seq1  AATTATTCCTCTCTAAAAAAATTGCAGGGACAACAATGGAGAACAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCCTCTCTAAAAAAATTGCAGGGACAACAATGGAGAACAGACTG  350

seq1  AGGGAAAGGAAGCTCAGTGACCAGCCCAATCAGGATGGAAGGGAAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGAAGCTCAGTGACCAGCCCAATCAGGATGGAAGGGAAGCTCC  400

seq1  AAGGCCTGACACGACTACTGATGGTGTGTTTACAGGTAGGAGCCCAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGACACGACTACTGATGGTGTGTTTACAGGTAGGAGCCCAGCCT  450

seq1  GGGTGCCCTCTGAGATGCCCAACAAGCAGCCGAAAATGTCTTGCC-TTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGTGCCCTCTGAGATGCCCAACAAGCAGCCGAAAATGTCTTGCCTTTTT  500

seq1  TGGTGACTATGTGCATGAAGACATATTTAGAAATGTAAGAAATATAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTATGTGCATGAAGACATATTTAGAAATGTAAGAAATATAAAAT  550

seq1  CTAGTGATGTCTAGAGCTTCAAAATGACTATTCTAGCTTACAGAAGCTCA  599
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGATGTCAAGAGCTTCAAAATGACTATTCTAGCTTACAGAAGCTCA  600

seq1  CCGAGTTGTTTAGCGCACTTTGGTTCTAGATGTGTTTCCTATGCCGTGTT  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCGAGTTGTTTAGCGCACTTTGGTTCTAAATGTGTTTCCTATGCCGTGTT  650

seq1  TGTTTGTTTTATTTTATTGTTTTCAAGCTTTTTATAATGACAATTTATTT  699
      |||| | |||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTTAGATTTATTTTATTGTTTTCAAGCTTTTTATAATGACGATTTATTT  700

seq1  T  700
      |
seq2  T  701