BAC Information

Click to search

BAC

Clone NameB6Ng01-071G03
Chromosome11 (Build37)
Map Location 116,131,279 - 116,339,186
singlet/doubletdoublet
Overlap geneSrp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1
Upstream geneFdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl
Downstream geneLOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071G03.bB6Ng01-071G03.g
ACCDH889099DH889100
length1,1701,150
definitionDH889099|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G03, 5' end.DH889100|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,131,279 - 116,132,477)(116,338,020 - 116,339,186)
sequence
gaattcccttcaggaagggagcagctccacacaggacattccacaggtcc
cgctgtccctggaactgcagagcagcacctgctcagctccttgttctccg
ctctactccactcttcctaggtcatcagtgaggcccaaattggggccagg
gagatggcaccgaggatagaggtatctgctaccatgcagatgacctgagt
tccatctttgggactcacatggtggaaggagggaaccaacttcctcagct
gccccctcaagtgtgcctcagcaagcatgtacccatatacaaacacacgt
gaacacaaaacatataaagacactgaaaaagaagtgagtggagagatggc
tctggggttaagatcaagttctgtcttccaaaggcctgcgttcagttccc
agcagctcatcagacggctcataactacctctagcaggaactctagctcc
aggggacccaacaccctcttctctactccacggcacctgcccagaagaga
gcagcagactccctggaactggagctacaggtggctgtgagtcaatctgt
caagccagcccaagtcagactcaaagaaaagcaagatctagggatacaca
gcagagcacttacccaagtgcctaaggttctgggcacccccccccccccc
cgcaggaccataaacaaacaaacagcctgagactggcaggcatggagagc
cacacctgtgcaactaccacgtggtaggctaacttaaacagatcctaact
taaggcttaaacagatcctaacttaaggctagcctgggctacgtagcaat
tcagaagccagccagaattatatagtaagactctctcaaaagccaaacaa
tgaaacatgagccaggtgcccaccagtaaaccgagctcttggcagtcaat
gagagcaagctggaggccagcgtggacagcgcagatgcgagtcagacacc
taacccagacaccggatctaaagcagatgcgcccgccgagtggatgtagc
tcagcagtaaagtcttcacccaatgacctggctctatcccagaaaataaa
gttgcattgaaaggcacattcgcaatctagtatatggaaaagtgactgca
gatacttagctaagtaggggaactggttcagtgggtcaaaggccacctga
aagttctggaccaagcctga
gaattctcccagtcttcagggagacagtgactgagcacttagcagtgatc
ttattgaagacagtgcgtcctttgtgtacaccgggcttttttcaggctcc
cttcatagctgaggatgacctggaaattctgaccttgctgcctttccttc
tggaatgctgcaattaggagagtcactatgccctgtttatatagtgctgg
gaatcaaacccacaaccctacgcatgccagatgagcactctaccaactaa
gccacatctccagtctgcccctgatttttgaaacattgttttgaacaagg
ttctggaaatagctttaaggaatactggggagagaaaccccaaattatcg
agactccaacagtagcccttgaggcgtttatcttctggcctggtttatag
aaatggttctttgtgccccctcaaagactgaatgcgggttctgtcttgtg
atcactagagcggggccgtgggctgggccttcttcccatcagtgtcaccg
tggccaaccattgtcttcttctcagggctcagtcctatgctgaaaggctc
cgcctggggctggctgtgatccacggagaagcgcagtgtacagagctgga
tatggacgacggtcggcactccccacccatggtcaagaacgccacggtgc
acccaggcctggagctgccctgtaagattgcaccacctttgcttgtgaac
aggagacaattccgaatctgtgactcttggtgtgaattagaggctctttg
agctgtttagcgctctttaagtaatcgagtgtattgccttggcttcccca
ttcataaaagaggagttaggggttccctcacccagcacagttggctagag
cggcttgtaagtgtgagtgtgtacctttagtgcgcagctgtgtgtgacgg
tgtggagcccagagcctttggttgtactttggtaattggcatggcctttg
gggtttggccattaggcctcttaccatttgtttgttagtgggcaggtctt
ggacctggtatctgactaaattgctgctctactcaaatgggtgagcagct
cactcaccagacactctgcactgacgaggctgtacactgcaagaagccta
cggctaacgaaagagagtacatcttgcctgaacggtcaagagtaacaggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116131279_116132477
seq2: B6Ng01-071G03.b_43_1212

seq1  GAATTCCCTTCAGGAAGGGAGCAGCTCCACACAGGACATTCCACAGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCAGGAAGGGAGCAGCTCCACACAGGACATTCCACAGGTCC  50

seq1  CGCTGTCCCTGGAACTGCAGAGCAGCACCTGCTCAGCTCCTTGTTCTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTCCCTGGAACTGCAGAGCAGCACCTGCTCAGCTCCTTGTTCTCCG  100

seq1  CTCTACTCCACTCTTCCTAGGTCATCAGTGAGGCCCAAATTGGGGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCCACTCTTCCTAGGTCATCAGTGAGGCCCAAATTGGGGCCAGG  150

seq1  GAGATGGCACCGAGGATAGAGGTATCTGCTACCATGCAGATGACCTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCACCGAGGATAGAGGTATCTGCTACCATGCAGATGACCTGAGT  200

seq1  TCCATCTTTGGGACTCACATGGTGGAAGGAGGGAACCAACTTCCTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTGGGACTCACATGGTGGAAGGAGGGAACCAACTTCCTCAGCT  250

seq1  GCCCCCTCAAGTGTGCCTCAGCAAGCATGTACCCATATACAAACACACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTCAAGTGTGCCTCAGCAAGCATGTACCCATATACAAACACACGT  300

seq1  GAACACAAAACATATAAAGACACTGAAAAAGAAGTGAGTGGAGAGATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAAACATATAAAGACACTGAAAAAGAAGTGAGTGGAGAGATGGC  350

seq1  TCTGGGGTTAAGATCAAGTTCTGTCTTCCAAAGGCCTGCGTTCAGTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTTAAGATCAAGTTCTGTCTTCCAAAGGCCTGCGTTCAGTTCCC  400

seq1  AGCAGCTCATCAGACGGCTCATAACTACCTCTAGCAGGAACTCTAGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCATCAGACGGCTCATAACTACCTCTAGCAGGAACTCTAGCTCC  450

seq1  AGGGGACCCAACACCCTCTTCTCTACTCCACGGCACCTGCCCAGAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACCCAACACCCTCTTCTCTACTCCACGGCACCTGCCCAGAAGAGA  500

seq1  GCAGCAGACTCCCTGGAACTGGAGCTACAGGTGGCTGTGAGTCAATCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGACTCCCTGGAACTGGAGCTACAGGTGGCTGTGAGTCAATCTGT  550

seq1  CAAGCCAGCCCAAGTCAGACTCAAAGAAAAGCAAGATCTAGGGATACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGCCCAAGTCAGACTCAAAGAAAAGCAAGATCTAGGGATACACA  600

seq1  GCAGAGCACTTACCCAAGTGCCTAAGGTTCTGGGCACCCCCCCCCCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCACTTACCCAAGTGCCTAAGGTTCTGGGCACCCCCCCCCCCCCC  650

seq1  CGCAGGACCATAAACAAACAAACAGCCTGAGACTGGCAGGCATGGAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGACCATAAACAAACAAACAGCCTGAGACTGGCAGGCATGGAGAGC  700

seq1  CACACCTGTGCAACTACCACGTGGTAGGCTAACTTAAACAGATCCTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTGCAACTACCACGTGGTAGGCTAACTTAAACAGATCCTAACT  750

seq1  TAAGGCTTAAACAGATCCTAACTTAAGGCTAGCCTGGGCTACGTAGCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTTAAACAGATCCTAACTTAAGGCTAGCCTGGGCTACGTAGCAAT  800

seq1  TCAGAAGCCAGCCAGAATTATATAGTAAGACTCTCTCAAAAAGCCAAACA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAGAAGCCAGCCAGAATTATATAGTAAGACTCTCTC-AAAAGCCAAACA  849

seq1  ATGAAACATGAGCCAGGTGCCCACCAGTAAACCGAGCTCTTGGCAGTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACATGAGCCAGGTGCCCACCAGTAAACCGAGCTCTTGGCAGTCAA  899

seq1  TGAGAGCAAGCTGGAGGCCAGCGTGGACAGCGCAGATGCGAGTCAGAACA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAGAGCAAGCTGGAGGCCAGCGTGGACAGCGCAGATGCGAGTCAG-ACA  948

seq1  CCTAACCCAGACACCGGATCTAAAGCAGATGCGCCCGCCCGGAGGTGGGA  1000
      |||||||||||||||||||||||||||||||||||||||  |||   |||
seq2  CCTAACCCAGACACCGGATCTAAAGCAGATGCGCCCGCC--GAG--TGGA  994

seq1  TGTAGCTCAGCAGTAAAGTTCTTCCAACCCCAATGACCTGGGCTCTATCC  1050
      |||||||||||||||||| |||||    ||||||||||| |||||||| |
seq2  TGTAGCTCAGCAGTAAAG-TCTTC---ACCCAATGACCT-GGCTCTAT-C  1038

seq1  CCAGAAAAATAAAGTTGCATTTGAAAAGGGCACATTCGCATTCTAGTATA  1100
      |||| |||||||||||||| ||||||  |||||||||||| |||||||||
seq2  CCAG-AAAATAAAGTTGCA-TTGAAA--GGCACATTCGCAATCTAGTATA  1084

seq1  TGAAAAAAGTGACTGCAGGATACCTAGCTAAGTAAGGGGAGACTGGGGTC  1150
      ||  ||||||||||||| ||||| ||||||||| |||||| ||| || ||
seq2  TG-GAAAAGTGACTGCA-GATACTTAGCTAAGT-AGGGGA-ACT-GGTTC  1129

seq1  AGTTGTGTCAAAGAGGCCACCTGAAAGGGTTTCTGCAGACCAAGCCTGA  1199
      || || |||||  ||||||||||||||   |||||  ||||||||||||
seq2  AG-TGGGTCAA--AGGCCACCTGAAAG---TTCTG--GACCAAGCCTGA  1170

seq1: chr11_116338020_116339186
seq2: B6Ng01-071G03.g_67_1216 (reverse)

seq1  CCCTGCTACTCTGTGACCGTTTCCGGGGCAGATGTACTCTCTTTTCTGTA  50
      ||||| |||||| ||||||||  | ||  |||||||||||||||   || 
seq2  CCCTGTTACTCT-TGACCGTT--CAGGCAAGATGTACTCTCTTT--CGTT  45

seq1  AACCCCTTAGGCCTCTCTGCAGTGTACAGCCCTCGTCAGTGCCAGAGTGT  100
      |   || ||||| ||| |||||||||||| ||||||||||| ||||||||
seq2  A--GCCGTAGGCTTCT-TGCAGTGTACAG-CCTCGTCAGTG-CAGAGTGT  90

seq1  CTGTGGAAGTGAGCTGCTCACCCATTTGGAGTAAGAGCAGCAATTTAGTC  150
      ||| |  |||||||||||||||||||| |||| |||||||||||||||||
seq2  CTG-GTGAGTGAGCTGCTCACCCATTT-GAGT-AGAGCAGCAATTTAGTC  137

seq1  AGATACCAGGTCCAAGACCTGCCCAACTAAAACAAACAAATGGTAAAGAG  200
      |||||||||||||||||||||||| |||  |||||||||||||| |||||
seq2  AGATACCAGGTCCAAGACCTGCCC-ACT--AACAAACAAATGGT-AAGAG  183

seq1  GCCTAATGGCCAAAACCCCAAAGCCATGCCAATTACCAAAGTACAACCAA  250
      |||||||||||||| ||| || ||||||||||||||||||||||||||||
seq2  GCCTAATGGCCAAACCCCAAAGGCCATGCCAATTACCAAAGTACAACCAA  233

seq1  AGGCTCTGGGCTCCACACCGTCACACACAGCTGCGCACTAAAGGTACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGGGCTCCACACCGTCACACACAGCTGCGCACTAAAGGTACACA  283

seq1  CTCACACTTACAAGCCGCTCTAGCCAACTGTGCTGGGTGAGGGAACCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTTACAAGCCGCTCTAGCCAACTGTGCTGGGTGAGGGAACCCCT  333

seq1  AACTCCTCTTTTATGAATGGGGAAGCCAAGGCAATACACTCGATTACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTCTTTTATGAATGGGGAAGCCAAGGCAATACACTCGATTACTTA  383

seq1  AAGAGCGCTAAACAGCTCAAAGAGCCTCTAATTCACACCAAGAGTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCGCTAAACAGCTCAAAGAGCCTCTAATTCACACCAAGAGTCACAG  433

seq1  ATTCGGAATTGTCTCCTGTTCACAAGCAAAGGTGGTGCAATCTTACAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGAATTGTCTCCTGTTCACAAGCAAAGGTGGTGCAATCTTACAGGG  483

seq1  CAGCTCCAGGCCTGGGTGCACCGTGGCGTTCTTGACCATGGGTGGGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCAGGCCTGGGTGCACCGTGGCGTTCTTGACCATGGGTGGGGAGT  533

seq1  GCCGACCGTCGTCCATATCCAGCTCTGTACACTGCGCTTCTCCGTGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACCGTCGTCCATATCCAGCTCTGTACACTGCGCTTCTCCGTGGATC  583

seq1  ACAGCCAGCCCCAGGCGGAGCCTTTCAGCATAGGACTGAGCCCTGAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGCCCCAGGCGGAGCCTTTCAGCATAGGACTGAGCCCTGAGAAG  633

seq1  AAGACAATGGTTGGCCACGGTGACACTGATGGGAAGAAGGCCCAGCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATGGTTGGCCACGGTGACACTGATGGGAAGAAGGCCCAGCCCAC  683

seq1  GGCCCCGCTCTAGTGATCACAAGACAGAACCCGCATTCAGTCTTTGAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCGCTCTAGTGATCACAAGACAGAACCCGCATTCAGTCTTTGAGGG  733

seq1  GGCACAAAGAACCATTTCTATAAACCAGGCCAGAAGATAAACGCCTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAAGAACCATTTCTATAAACCAGGCCAGAAGATAAACGCCTCAAG  783

seq1  GGCTACTGTTGGAGTCTCGATAATTTGGGGTTTCTCTCCCCAGTATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTGTTGGAGTCTCGATAATTTGGGGTTTCTCTCCCCAGTATTCCT  833

seq1  TAAAGCTATTTCCAGAACCTTGTTCAAAACAATGTTTCAAAAATCAGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTATTTCCAGAACCTTGTTCAAAACAATGTTTCAAAAATCAGGGG  883

seq1  CAGACTGGAGATGTGGCTTAGTTGGTAGAGTGCTCATCTGGCATGCGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGAGATGTGGCTTAGTTGGTAGAGTGCTCATCTGGCATGCGTAG  933

seq1  GGTTGTGGGTTTGATTCCCAGCACTATATAAACAGGGCATAGTGACTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGGTTTGATTCCCAGCACTATATAAACAGGGCATAGTGACTCTC  983

seq1  CTAATTGCAGCATTCCAGAAGGAAAGGCAGCAAGGTCAGAATTTCCAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGCAGCATTCCAGAAGGAAAGGCAGCAAGGTCAGAATTTCCAGGT  1033

seq1  CATCCTCAGCTATGAAGGGAGCCTGAAAAAAGCCCGGTGTACACAAAGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAGCTATGAAGGGAGCCTGAAAAAAGCCCGGTGTACACAAAGGA  1083

seq1  CGCACTGTCTTCAATAAGATCACTGCTAAGTGCTCAGTCACTGTCTCCCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTGTCTTCAATAAGATCACTGCTAAGTGCTCAGTCACTGTCTCCCT  1133

seq1  GAAGACTGGGAGAATTC  1167
      |||||||||||||||||
seq2  GAAGACTGGGAGAATTC  1150