BAC Information

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BAC

Clone NameB6Ng01-072F21
Chromosome11 (Build37)
Map Location 18,669,569 - 18,790,644
singlet/doubletdoublet
Overlap geneMeis1
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072F21.bB6Ng01-072F21.g
ACCDH889804DH889805
length1,209752
definitionDH889804|Mus musculus domesticus DNA, BAC clone: B6Ng01-072F21, 5' end.DH889805|Mus musculus domesticus DNA, BAC clone: B6Ng01-072F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,669,569 - 18,670,780)(18,789,893 - 18,790,644)
sequence
gaattcaagttttgatcccagtgtgatcctgaatacatcattgttcatct
tcttccatttcccctgcaaactgagaataatggtcagagcaaataatggg
aatattgaattatgagatgacgagaataccatctgacattggatatgtgg
catatcaatgtcgatgtttcattatgttggggtaacgcatgcttagcacc
ttctttttcattggatattttctttatttacatttcaaatgttatcccct
tcccctgtttccttccccaaaaacccctatcccatcctccctacccctgc
ttctatgtgggtgttcccccacccaaccaaaccattttcttgaccaagtg
tcatggagttttcttcaaaggataatccttgaagtggaatatggcaaact
ctaccattacacagcgccatattttaaatatttggaagagactcaaacct
cttctcaggtaatgactctcctacataagtcctactataactgaaaatct
tagagactgtctccagttgtatgattatgaggttaggccccaaacccagt
tctctattcacgttctcaaatctcacaaatataactgatttgaaagccaa
acaatgcttctaaaaagatgtctgcagatccaaccagtcaagggaaatgc
acatgtaaatcaactgaagtataaatgaattaattaagtttttagaatac
attgtatgaatggcagtactgtccctgtccagaacatattttcaaagaaa
gtttctctaatcatgttcacatataaacaaaagtaacacatgagacgcag
ttccctaacacatagtatcctagtacagagttcccagctaacccaactcc
caaactctttataaagtttctctatatagtgctgagccagttctcaacca
tttggagaatgtgcatggggatgtctgctccaccactttattcattggat
aatggaactgcagtctttggaaacagtctaaaaatcaagaaaaaaaagaa
aattttaattacccacagacctaatcaataggcgataggtgatccacttt
gaaacttatatctgtggtgatttttaggggtgggtggtggcattcatggg
cattttctttcaatcacaaagccttaatatcatgattcggacatttaaat
tgatttccatctggagaaaaacatatctgtttgttttgcataaaccaagg
tctgagaga
gaattctttgttcaaagtaaaattcaggaggctggagagatggctcagtg
gttaagaacactgactgcttttccataggttctgagttcaattcccagga
accacatggtggctcacaccatttgtaatgggatccaaagcactcttctg
gtgtgtgtctcaagagagctacagtgtactcatatgaataaaaataaata
aatctaaaaaaacccaaaagaagtgaaaagaagtgaaagagaaaaaatta
aaaaaaaaaacaaaccaaaattcagatacagtttgcaatctccttgtctg
attcttataaaacacaaaaagtaaaattcaatttatagatgatcccaaat
ctctaatgctgggagactttcttttctgtcttagctccactcctccttat
aaggacactgagtcctaaacaaacaaccagggcagaaagaaatatatctc
tgtttatttggacatggagggagctgtaaggtcaaagtgctatattcctt
tccttggtaagacttggcctcaggaaaaagaattggctctcaatacaaat
tttgctctgtgctgcgcacacaaggagatgcagccttctttccttaattc
agttgtttatcaccctcagaaaaggagttgagttcttcaaagcactttat
aattaaggtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaga
atatacaaaggcaaataaaacttttacaacctttaaagatcatttaatct
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_18669569_18670780
seq2: B6Ng01-072F21.b_43_1251

seq1  GAATTCAAGTTTTGATCCCAGTGTGATCCTGAATACATCATTGTTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTTGATCCCAGTGTGATCCTGAATACATCATTGTTCATCT  50

seq1  TCTTCCATTTCCCCTGCAAACTGAGAATAATGGTCAGAGCAAATAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATTTCCCCTGCAAACTGAGAATAATGGTCAGAGCAAATAATGGG  100

seq1  AATATTGAATTATGAGATGACGAGAATACCATCTGACATTGGATATGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAATTATGAGATGACGAGAATACCATCTGACATTGGATATGTGG  150

seq1  CATATCAATGTCGATGTTTCATTATGTTGGGGTAACGCATGCTTAGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAATGTCGATGTTTCATTATGTTGGGGTAACGCATGCTTAGCACC  200

seq1  TTCTTTTTCATTGGATATTTTCTTTATTTACATTTCAAATGTTATCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCATTGGATATTTTCTTTATTTACATTTCAAATGTTATCCCCT  250

seq1  TCCCCTGTTTCCTTCCCCAAAAACCCCTATCCCATCCTCCCTACCCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTTTCCTTCCCCAAAAACCCCTATCCCATCCTCCCTACCCCTGC  300

seq1  TTCTATGTGGGTGTTCCCCCACCCAACCAAACCATTTTCTTGACCAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTGGGTGTTCCCCCACCCAACCAAACCATTTTCTTGACCAAGTG  350

seq1  TCATGGAGTTTTCTTCAAAGGATAATCCTTGAAGTGGAATATGGCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGTTTTCTTCAAAGGATAATCCTTGAAGTGGAATATGGCAAACT  400

seq1  CTACCATTACACAGCGCCATATTTTAAATATTTGGAAGAGACTCAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATTACACAGCGCCATATTTTAAATATTTGGAAGAGACTCAAACCT  450

seq1  CTTCTCAGGTAATGACTCTCCTACATAAGTCCTACTATAACTGAAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGGTAATGACTCTCCTACATAAGTCCTACTATAACTGAAAATCT  500

seq1  TAGAGACTGTCTCCAGTTGTATGATTATGAGGTTAGGCCCCAAACCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTGTCTCCAGTTGTATGATTATGAGGTTAGGCCCCAAACCCAGT  550

seq1  TCTCTATTCACGTTCTCAAATCTCACAAATATAACTGATTTGAAAGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTCACGTTCTCAAATCTCACAAATATAACTGATTTGAAAGCCAA  600

seq1  ACAATGCTTCTAAAAAGATGTCTGCAGATCCAACCAGTCAAGGGAAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTTCTAAAAAGATGTCTGCAGATCCAACCAGTCAAGGGAAATGC  650

seq1  ACATGTAAATCAACTGAAGTATAAATGAATTAATTAAGTTTTTAGAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAATCAACTGAAGTATAAATGAATTAATTAAGTTTTTAGAATAC  700

seq1  ATTGTATGAATGGCAGTACTGTCCCTGTCCAGAACATATTTTCAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGAATGGCAGTACTGTCCCTGTCCAGAACATATTTTCAAAGAAA  750

seq1  GTTTCTCTAATCATGTTCACATATAAACAAAAGTAACACATGAGACGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTAATCATGTTCACATATAAACAAAAGTAACACATGAGACGCAG  800

seq1  TTCCCTAACACATAGTATCCTAGTACAGAGTTCCCAGCTAACCCAACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAACACATAGTATCCTAGTACAGAGTTCCCAGCTAACCCAACTCC  850

seq1  CAAACTCTTTATAAAGTTTCTCTATATAGTGCTGAGCCAGTTCTCAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTTTATAAAGTTTCTCTATATAGTGCTGAGCCAGTTCTCAACCA  900

seq1  TTTGGAGAATGTGCATGGGGATGTCTGCTCCACCACTTTATTCATTGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAATGTGCATGGGGATGTCTGCTCCACCACTTTATTCATTGGAT  950

seq1  AATGGAACTGCAGTCTTTGGAAACAGTCTAAAAATCAAGAAAAAAAAAGA  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATGGAACTGCAGTCTTTGGAAACAGTCTAAAAATCAAG-AAAAAAAAGA  999

seq1  AAAATTTTAAATAACCCACAGACCTAATCAATAGGCGATAGGTGATCCAA  1050
      |||  ||| ||| ||||||||||||||||||||||||||||||||||| |
seq2  AAA--TTTTAATTACCCACAGACCTAATCAATAGGCGATAGGTGATCC-A  1046

seq1  CTATGAAAACTTATTATCTGTGTGTATTTTTATGTGTTGGTTGGTGGCAT  1100
      || || ||||||| ||||||||   ||||||| | | ||| |||||||||
seq2  CTTTG-AAACTTA-TATCTGTGGTGATTTTTA-GGGGTGGGTGGTGGCAT  1093

seq1  TCATGGGCATATTC-TTCAAT-ACAAAGCATAAATTACATGA-TCAGACA  1147
      |||||||||| ||| |||||| ||||||| | |||  ||||| || ||||
seq2  TCATGGGCATTTTCTTTCAATCACAAAGCCTTAATATCATGATTCGGACA  1143

seq1  TATAATATGATTT-CATCT-GAG-AGAACATATCTGTTTGTTTTGCATAA  1194
      | |||  |||||| ||||| ||| | ||||||||||||||||||||||  
seq2  TTTAAATTGATTTCCATCTGGAGAAAAACATATCTGTTTGTTTTGCAT--  1191

seq1  AAACAAGGGTCTGAGAGA  1212
      |||| | |||||||||||
seq2  AAACCAAGGTCTGAGAGA  1209

seq1: chr11_18789893_18790644
seq2: B6Ng01-072F21.g_68_819 (reverse)

seq1  TCAG-TTAAATGATCTTTAAAGGTTGTAAATGTTTTATTTGCCTTTGTAT  49
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAGATTAAATGATCTTTAAAGGTTGTAAAAGTTTTATTTGCCTTTGTAT  50

seq1  ATTACTGTACACACACACACACACACACACACACACAAACACACACCTTA  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATT-CTGTACACACACACACACACACACACACACACAAACACACACCTTA  99

seq1  ATTATAAAGTGCTTTGAAGAACTCAACTCCTTTTCTGAGGGTGATAAACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAGTGCTTTGAAGAACTCAACTCCTTTTCTGAGGGTGATAAACA  149

seq1  ACTGAATTAAGGAAAGAAGGCTGCATCTCCTTGTGTGCGCAGCACAGAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTAAGGAAAGAAGGCTGCATCTCCTTGTGTGCGCAGCACAGAGC  199

seq1  AAAATTTGTATTGAGAGCCAATTCTTTTTCCTGAGGCCAAGTCTTACCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGTATTGAGAGCCAATTCTTTTTCCTGAGGCCAAGTCTTACCAA  249

seq1  GGAAAGGAATATAGCACTTTGACCTTACAGCTCCCTCCATGTCCAAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAATATAGCACTTTGACCTTACAGCTCCCTCCATGTCCAAATAA  299

seq1  ACAGAGATATATTTCTTTCTGCCCTGGTTGTTTGTTTAGGACTCAGTGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATATATTTCTTTCTGCCCTGGTTGTTTGTTTAGGACTCAGTGTC  349

seq1  CTTATAAGGAGGAGTGGAGCTAAGACAGAAAAGAAAGTCTCCCAGCATTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAGGAGGAGTGGAGCTAAGACAGAAAAGAAAGTCTCCCAGCATTA  399

seq1  GAGATTTGGGATCATCTATAAATTGAATTTTACTTTTTGTGTTTTATAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTGGGATCATCTATAAATTGAATTTTACTTTTTGTGTTTTATAAG  449

seq1  AATCAGACAAGGAGATTGCAAACTGTATCTGAATTTTGGTTTGTTTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGACAAGGAGATTGCAAACTGTATCTGAATTTTGGTTTGTTTTTTT  499

seq1  TTTTAATTTTTTCTCTTTCACTTCTTTTCACTTCTTTTGGGTTTTTTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTTTCTCTTTCACTTCTTTTCACTTCTTTTGGGTTTTTTTAG  549

seq1  ATTTATTTATTTTTATTCATATGAGTACACTGTAGCTCTCTTGAGACACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTTTATTCATATGAGTACACTGTAGCTCTCTTGAGACACA  599

seq1  CACCAGAAGAGTGCTTTGGATCCCATTACAAATGGTGTGAGCCACCATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAGAGTGCTTTGGATCCCATTACAAATGGTGTGAGCCACCATGT  649

seq1  GGTTCCTGGGAATTGAACTCAGAACCTATGGAAAAGCAGTCAGTGTTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGGGAATTGAACTCAGAACCTATGGAAAAGCAGTCAGTGTTCTT  699

seq1  AACCACTGAGCCATCTCTCCAGCCTCCTGAATTTTACTTTGAACAAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGAGCCATCTCTCCAGCCTCCTGAATTTTACTTTGAACAAAGAA  749

seq1  TTC  752
      |||
seq2  TTC  752