BAC Information

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BAC

Clone NameB6Ng01-072G15
Chromosome6 (Build37)11 (Build37)
Map Location 40,627,597 - 40,628,413109,053,349 - 109,053,829
singlet/doubletsingletsinglet
Overlap geneMgam
Upstream geneBraf, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138
Downstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072G15.bB6Ng01-072G15.g
ACCDH889839DH889840
length883475
definitionDH889839|Mus musculus domesticus DNA, BAC clone: B6Ng01-072G15, 5' end.DH889840|Mus musculus domesticus DNA, BAC clone: B6Ng01-072G15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,627,597 - 40,628,413)(109,053,349 - 109,053,829)
sequence
gaattccgggaacttttctcaggggtacacatgaaagggccctgtaggca
tggggaggtggggggtctccttcaaatgtctcctcaagtcacttacaatc
caaacctgaaggtaagaattgcttttgtgaggaagctttccacaaacctc
catggggccatgatacttcttgctaaggtcacatgggctgctgaaggacc
agagcacttctgaggccaggtgaggaggttagagtattggagaaggaagg
ttaaaaacagagatgttgaagccaacgtggctccaggttttcccatcctt
atttttctcactcattttttttttcctaactggatgtggggacacgatcc
aacgaagagactctgaaagttgatggcttgtgctctaaggtgaagggaga
gagagagagagagagagagagagagagagagagagagagagagacagaga
gagagacagagagagagacagagagagagacagagagagagacagagaga
gaaagagagagagagagagagagatcgatcacaggtcttttatttattta
atttttaatgttcctttccttttcgtatgctttattaagacatcacatgt
tccctatcatatgcatttccaagaaatatttttgtggaaaaaggattgat
ggtgctaactaacatggacggtgattagacagtggaattctccagatgta
atggggtccactgtttctgtatgacttgtcttccattcctttacttcctc
agtcctgtgaggaacctttcctgagtcaattctgatggcttctcctgagg
ctcctcacggaaccagagtgctgaatcaatactgattgaggatcttttaa
gtttgagtttacctgtcaactgagacatttatt
tttgctacattttaaaggaatgtatttttcggtgcctgtataattttctc
aatttcaaaaaatgacattgagtgattgattgattgattgattgattgct
gtgtgcatgtgcaccatggcgtatttgttgttgaagatgattgtttcgtt
tgcctgtggaatctggctcttggaataaaacaaaacagagggtgagtgta
cctgggggagaagggacatcctccagggtgcttagaagaggaaaatctgc
ttctgggggaaatctttaaacatcacccctcctctctgggtagaggacgt
agaggtagaagcttctagaagcaccaagacttaagaaccaagtgccaagt
ggcagcctttccacgtattctaaggaggaccattcaatcacattcctgtt
cgttatgggcaagttccctcccttcagggtttaaagaaaagtcctgaagc
cttgtgtggtggggaaggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40627597_40628413
seq2: B6Ng01-072G15.b_105_922

seq1  TCTCCTTCAAATGTCTCCTCAAGTCACTTACAATCCAAACCTGAAGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCAAATGTCTCCTCAAGTCACTTACAATCCAAACCTGAAGGTAA  50

seq1  GAATTGCTTTTGTGAGGAAGCTTTCCACAAACCTCCATGGGGCCATGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTTTTGTGAGGAAGCTTTCCACAAACCTCCATGGGGCCATGATA  100

seq1  CTTCTTGCTAAGGTCACATGGGCTGCTGAAGGACCAGAGCACTTCTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCTAAGGTCACATGGGCTGCTGAAGGACCAGAGCACTTCTGAGG  150

seq1  CCAGGTGAGGAGGTTAGAGTATTGGAGAAGGAAGGTTAAAAACAGAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGAGGAGGTTAGAGTATTGGAGAAGGAAGGTTAAAAACAGAGATG  200

seq1  TTGAAGCCAACGTGGCTCCAGGTTTTCCCATCCTTATTTTTCTCACTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCCAACGTGGCTCCAGGTTTTCCCATCCTTATTTTTCTCACTCAT  250

seq1  TTTTTTTTTCCTAACTGGATGTGGGGACACGATCCAACGAAGAGACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCTAACTGGATGTGGGGACACGATCCAACGAAGAGACTCTG  300

seq1  AAAGTTGATGGCTTGTGCTCTAAGGTGAAGGGAGAGAGAGAGAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGATGGCTTGTGCTCTAAGGTGAAGGGAGAGAGAGAGAGAGAGAG  350

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGAG  400

seq1  AGACAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAAAGAGAGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAAAGAGAGAGAGAG  450

seq1  AGAGAGAGATCGATCACAGGTCTTTTATTTATTTAATTTTTAATGTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGATCGATCACAGGTCTTTTATTTATTTAATTTTTAATGTTCCT  500

seq1  TTCCTTTTCGTATGCTTTATTAAGACATCACATGTTCCCTATCATATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCGTATGCTTTATTAAGACATCACATGTTCCCTATCATATGCA  550

seq1  TTTCCAAGAAATA-TTTTGTGGAAAAAGGATTGATGGTGCTAACTAACAT  599
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGAAATATTTTTGTGGAAAAAGGATTGATGGTGCTAACTAACAT  600

seq1  GGACGGTGATTAGACAGTGGAATTCTCCAGATGTAATGGGGTCCACTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGTGATTAGACAGTGGAATTCTCCAGATGTAATGGGGTCCACTGTT  650

seq1  TCTGTATGACTTGTCTTCCATTCCTTTACTTCCTCAGTCCTGTGAGGAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGACTTGTCTTCCATTCCTTTACTTCCTCAGTCCTGTGAGGAAC  700

seq1  CTTTCCTGAGTCAATTCTGATGGCTTCTCCTGAGGCTCCTCACGGAACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGAGTCAATTCTGATGGCTTCTCCTGAGGCTCCTCACGGAACCA  750

seq1  GAGTGCTGAATCAATACTGATTGAGGATCTTTTAAGTTTGAGTTTACCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGAATCAATACTGATTGAGGATCTTTTAAGTTTGAGTTTACCTG  800

seq1  TCAACTGAGACATTTATT  817
      ||||||||||||||||||
seq2  TCAACTGAGACATTTATT  818

seq1: chr11_109053349_109053829
seq2: B6Ng01-072G15.g_65_545

seq1  GAATTCTTTGCTACATTTAAAAGGAAAAGATTTGT-GGTGCAGAATATAA  49
      |||||||||||||||||| |||||||   |||| | |||||    |||||
seq2  GAATTCTTTGCTACATTTTAAAGGAATGTATTTTTCGGTGC-CTGTATAA  49

seq1  TTTTCCACAATTTCAAAAAATTACATTGATTGATTGATTGATTGATTGAT  99
      |||| | |||||||||||||| ||||||| ||||||||||||||||||||
seq2  TTTT-CTCAATTTCAAAAAATGACATTGAGTGATTGATTGATTGATTGAT  98

seq1  TGATTGCTGTGTGCATGTGCACCATGGCGTATTTGTTGTTGAGGATGATT  149
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGATTGCTGTGTGCATGTGCACCATGGCGTATTTGTTGTTGAAGATGATT  148

seq1  GTTTCGGTTGTCTGTGGGATCTGGAGATTGGAATCAAGTCGTCAGTGTTG  199
      |||||| ||| |||||| ||||||   ||||||| ||     ||      
seq2  GTTTCGTTTGCCTGTGGAATCTGGCTCTTGGAATAAA----ACA------  188

seq1  GTAACA---GTTGCCTTTATCTTG----CCAG-----TCCTCCACAAACT  237
        ||||   | ||  | || || |      ||     |||||||      
seq2  -AAACAGAGGGTGAGTGTACCTGGGGGAGAAGGGACATCCTCCAGGGTGC  237

seq1  TTACAAAAGTAAAATATCGCATATCGAGG-AATCTTTAGACATCACCCCT  286
      ||| || || ||||| | || | | | || |||||||| |||||||||||
seq2  TTAGAAGAGGAAAATCT-GCTTCTGGGGGAAATCTTTAAACATCACCCCT  286

seq1  CCTCTCTGGGTAGAGGACGTAGAGGTAGAAGCTTCTAGAAGCACCAAGAC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGGGTAGAGGACGTAGAGGTAGAAGCTTCTAGAAGCACCAAGAC  336

seq1  TTAAGAACCAAGTGCCAAGTGGCAGCCTTTCCACGTATTCTAAGGAGGAC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACCAAGTGCCAAGTGGCAGCCTTTCCACGTATTCTAAGGAGGAC  386

seq1  CATTCAATCACATTCCTGTTCGTTATGGGCAAGTTCCCTCCCTTCAGGGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATCACATTCCTGTTCGTTATGGGCAAGTTCCCTCCCTTCAGGGT  436

seq1  TTAAAGAAAAGTCCTGAAGCCTTGTGTGGTGGGGAAGGGGTGGGG  481
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAAGTCCTGAAGCCTTGTGTGGTGGGGAAGGGGTGGGG  481