BAC Information

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BAC

Clone NameB6Ng01-072J24
Chromosome11 (Build37)
Map Location 44,628,086 - 44,754,761
singlet/doubletdoublet
Overlap geneEbf1
Upstream geneAdra1b, Il12b, Ublcp1, 3732413I11Rik
Downstream geneLOC382510, LOC633082, Clint1, Lsm11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072J24.bB6Ng01-072J24.g
ACCDH889990DH889991
length1,2001,075
definitionDH889990|Mus musculus domesticus DNA, BAC clone: B6Ng01-072J24, 5' end.DH889991|Mus musculus domesticus DNA, BAC clone: B6Ng01-072J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,628,086 - 44,629,297)(44,753,679 - 44,754,761)
sequence
gaattcacacaaaaaagaacaatatgggcagcttttctcaatgccccatg
gcagttcgtattatcttctctcttttaaactgcatttagtattgatcaaa
atttgatctccctaggaaagaaaaatgtattggagggtgataaagggaca
aatagcaatatgatttgtttagaacccccagctcccagcatcttccagat
cacctcaatcacccagaggttgggagatgctctcagatatacctcttgaa
tcaaggcctaaatataaaatactgccccagaggggaagaccaaagatccc
tttagataagaacctgccagttcttttggtctgagatgtctttgtgtgaa
cattttcctgcagaggtgggtagagtcttgcaaactgaagtgtaagaaac
atctggaggcagcccaggatgggaactgagggcctgaccggctgccagag
ggccagatgctaatgctggaaacctcttgcctcccagcttgtcatctgag
tccgatgatgccatccaaaaggaccacggagtgggagggcaacgagcgat
tcatctcctcccacccaaagctttaattgtgagacatagaaggaggagga
ggagggggcccaaggtttgatccccccaaccacagtttcctcatggaaac
aggctttctgaaaacacatgcttctggccacccaaagcctagatggaatg
gtcccatcccacctcccttccttttcccatggtctaaagagaatgaatag
agaaggcttggctctgttcagagatttttcctctggacctggggatgtac
tgagcatttttcaccaactgtatctgtctttaccttataggatttcctgg
attgcaagtgctcttcctattaacagctttggagtctgctttggccaaag
cagatcattgcgattcaggggagctgctctcctttttccactgcagaggc
aatcagagcctgtgcatacgtgctcctaaaggaaatgatgaaaccacact
cactcactctccctcactcactcacatacccctcctggacacgaatccag
tcaggatgactgcctcatgccatgcccaccgttcaggaatgctttctggc
ttataatactctggacgatgaaacctacaccgcatggcatagaaaacaat
tacctgtccgttagtcttatagctgtaacccttggcaccagggaagtctc

gaattcttagtggtgactaaataatcattacagtgcagtcagtggcaatt
acatggtaattcacattaactttataataagcactgtactcttcactata
tccattggaagatgagacagaattgtaggctttcatttctttttaatgcc
acccaaaataagaataaagtaagatcattgtaaaggcagaaggctccgga
acataatactggtgagttaagctgtagatcccattaaagagatgcttaaa
tccattaagtataattagacatgacactccagaattcacaaacagacatt
ctaataaaatcattaaaaatttttggtaggttctttaaaaatgggagact
cttataatataggctgttatattatattaaagctttataattttatatga
gctcttctcttttatgtaaaagcctatggaactttataagaacagttctg
tttaaatcaatgagtcttaaacaacaatgtacttcatgttacatgtattt
aataatgtaataaactattctgagtggtatagaataaaatgacaaggact
tcattctgattggctgagaaaccttgggatatagggtctcattttcttac
agcatcgcagggagcacatttacactcaaatctccatttacatgcatatt
atttaatttgggcaattatgaagtcttgagagcactttcattaccacttg
aacccttagaagactccatactatgaatgcatcatatgtaagactaggca
gaggcattctgagaagaaagcagtaggaacaactttaattgaacacttat
attagtgaattaaattaggtctgtttttaaatgagctacccttaattagc
tgctgttgggaaattggaaggaatatattttacattttactcattacact
gagcatccgtggacaactggtcattgtttttgctttttactacaactgaa
cacatttcttaaataatattttcttttatttgaattctagtagagcctct
aataaagtttaaagccgaaatcaaaatctccttgtacatcttggtgattg
gttggttttttttctttggttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_44628086_44629297
seq2: B6Ng01-072J24.b_44_1243

seq1  GAATTCACACAAAAAAGAACAATATGGGCAGCTTTTCTCAATGCCCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAAAAAAGAACAATATGGGCAGCTTTTCTCAATGCCCCATG  50

seq1  GCAGTTCGTATTATCTTCTCTCTTTTAAACTGCATTTAGTATTGATCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCGTATTATCTTCTCTCTTTTAAACTGCATTTAGTATTGATCAAA  100

seq1  ATTTGATCTCCCTAGGAAAGAAAAATGTATTGGAGGGTGATAAAGGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCTCCCTAGGAAAGAAAAATGTATTGGAGGGTGATAAAGGGACA  150

seq1  AATAGCAATATGATTTGTTTAGAACCCCCAGCTCCCAGCATCTTCCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAATATGATTTGTTTAGAACCCCCAGCTCCCAGCATCTTCCAGAT  200

seq1  CACCTCAATCACCCAGAGGTTGGGAGATGCTCTCAGATATACCTCTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAATCACCCAGAGGTTGGGAGATGCTCTCAGATATACCTCTTGAA  250

seq1  TCAAGGCCTAAATATAAAATACTGCCCCAGAGGGGAAGACCAAAGATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCTAAATATAAAATACTGCCCCAGAGGGGAAGACCAAAGATCCC  300

seq1  TTTAGATAAGAACCTGCCAGTTCTTTTGGTCTGAGATGTCTTTGTGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATAAGAACCTGCCAGTTCTTTTGGTCTGAGATGTCTTTGTGTGAA  350

seq1  CATTTTCCTGCAGAGGTGGGTAGAGTCTTGCAAACTGAAGTGTAAGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCTGCAGAGGTGGGTAGAGTCTTGCAAACTGAAGTGTAAGAAAC  400

seq1  ATCTGGAGGCAGCCCAGGATGGGAACTGAGGGCCTGACCGGCTGCCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGGCAGCCCAGGATGGGAACTGAGGGCCTGACCGGCTGCCAGAG  450

seq1  GGCCAGATGCTAATGCTGGAAACCTCTTGCCTCCCAGCTTGTCATCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATGCTAATGCTGGAAACCTCTTGCCTCCCAGCTTGTCATCTGAG  500

seq1  TCCGATGATGCCATCCAAAAGGACCACGGAGTGGGAGGGCAACGAGCGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATGATGCCATCCAAAAGGACCACGGAGTGGGAGGGCAACGAGCGAT  550

seq1  TCATCTCCTCCCACCCAAAGCTTTAATTGTGAGACATAGAAGGAGGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCTCCCACCCAAAGCTTTAATTGTGAGACATAGAAGGAGGAGGA  600

seq1  GGAGGGGGCCCAAGGTTTGATCCCCCCAACCACAGTTTCCTCATGGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGCCCAAGGTTTGATCCCCCCAACCACAGTTTCCTCATGGAAAC  650

seq1  AGGCTTTCTGAAAACACATGCTTCTGGCCACCCAAAGCCTAGATGGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCTGAAAACACATGCTTCTGGCCACCCAAAGCCTAGATGGAATG  700

seq1  GTCCCATCCCACCTCCCTTCCTTTTCCCATGGTCTAAAGAGAATGAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATCCCACCTCCCTTCCTTTTCCCATGGTCTAAAGAGAATGAATAG  750

seq1  AGAAGGCTTGGCTCTGTTCAGAGA-TTTTCCTCTGGACCTGGGGATGTAC  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAAGGCTTGGCTCTGTTCAGAGATTTTTCCTCTGGACCTGGGGATGTAC  800

seq1  TGAGCATTTTTCACCAACTGTATCTGTCTTTACCTTATAGGATTTCCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTTTCACCAACTGTATCTGTCTTTACCTTATAGGATTTCCTGG  850

seq1  ATTGCAAGTGCTCTTCCTATTAACAGCTTTGGAGTCTGCTTTTGGCCAAA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTGCAAGTGCTCTTCCTATTAACAGCTTTGGAGTCTGC-TTTGGCCAAA  899

seq1  GCAGATCATTGCGATTCAGGGGAGCTGCTCTCCTTTTTTCCACTGCAGAA  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  GCAGATCATTGCGATTCAGGGGAGCTGCTCTCC-TTTTTCCACTGCAGAG  948

seq1  GCAATCAAGAGCCTGTGCATACGGTGCTCCTAAAAGGAAAATGATGAAAA  999
      |||||| ||||||||||||||| |||||||||||  | |||||||| |||
seq2  GCAATC-AGAGCCTGTGCATAC-GTGCTCCTAAA--GGAAATGATG-AAA  993

seq1  CCACACACACACACACACACACACACACACACACACACACACACAGGACA  1049
      |||||| ||| ||| | | | ||| ||| |||| || | | | | |||| 
seq2  CCACACTCACTCACTCTCCCTCACTCACTCACATAC-CCCTC-CTGGAC-  1040

seq1  ACGAAATTCCAGTCAAGATGACTGCTTCATGCAATGCCCACCGTTCAGGA  1099
      |||||  |||||||| ||||||||| |||||| |||||||||||||||||
seq2  ACGAA--TCCAGTCAGGATGACTGCCTCATGCCATGCCCACCGTTCAGGA  1088

seq1  ATGCTTTTCTGCTTTATAATTACTCCTGACAGATG-AACCTACA-CGAAT  1147
      |||| ||||||  |||||| |||||  ||| |||| |||||||| || ||
seq2  ATGC-TTTCTGGCTTATAA-TACTCTGGAC-GATGAAACCTACACCGCAT  1135

seq1  GGCATAGAAAACAAATAACTGTCACGTAGTCTTAT-GCTGACCCCTTTGG  1196
      |||||||||||||| || |||||   ||||||||| ||||   || ||||
seq2  GGCATAGAAAACAATTACCTGTCCGTTAGTCTTATAGCTGTAACCCTTGG  1185

seq1  CACCCAGGGTAGTCTC  1212
      || |||||| ||||||
seq2  CA-CCAGGGAAGTCTC  1200

seq1: chr11_44753679_44754761
seq2: B6Ng01-072J24.g_67_1141 (reverse)

seq1  AAACAAACAAAGAAAAAAAACCCAAACCAATCACCAAGATTGTACAA-GA  49
      |||||| |||||||||||||||  ||||||||||||||| ||||||| ||
seq2  AAACAACCAAAGAAAAAAAACC--AACCAATCACCAAGA-TGTACAAGGA  47

seq1  GATTTTTGATTTCGGCTTTAAACTTTATTAGAGGCTTCTACTAGAATTCA  99
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GA-TTTTGATTTCGGCTTTAAACTTTATTAGAGGC-TCTACTAGAATTCA  95

seq1  AATAAAAGAAAATATTATTTAAGGAAATTGTGTTCAGTTGTTAGTAAAAA  149
      |||||||||||||||||||||||  || |||||||||||| |||| ||||
seq2  AATAAAAGAAAATATTATTTAAG--AAATGTGTTCAGTTG-TAGT-AAAA  141

seq1  AGCAAAAACAATGACCAGTTGTCCACGGATGCTCAGTGTAATGAGTAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAACAATGACCAGTTGTCCACGGATGCTCAGTGTAATGAGTAAAA  191

seq1  TGTAAAATATATTCCTTCCAATTTCCCAACAGCAGCTAATTAAGGGTAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATATATTCCTTCCAATTTCCCAACAGCAGCTAATTAAGGGTAGC  241

seq1  TCATTTAAAAACAGACCTAATTTAATTCACTAATATAAGTGTTCAATTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAAAACAGACCTAATTTAATTCACTAATATAAGTGTTCAATTAA  291

seq1  AGTTGTTCCTACTGCTTTCTTCTCAGAATGCCTCTGCCTAGTCTTACATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTCCTACTGCTTTCTTCTCAGAATGCCTCTGCCTAGTCTTACATA  341

seq1  TGATGCATTCATAGTATGGAGTCTTCTAAGGGTTCAAGTGGTAATGAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCATTCATAGTATGGAGTCTTCTAAGGGTTCAAGTGGTAATGAAAG  391

seq1  TGCTCTCAAGACTTCATAATTGCCCAAATTAAATAATATGCATGTAAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAAGACTTCATAATTGCCCAAATTAAATAATATGCATGTAAATG  441

seq1  GAGATTTGAGTGTAAATGTGCTCCCTGCGATGCTGTAAGAAAATGAGACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTGAGTGTAAATGTGCTCCCTGCGATGCTGTAAGAAAATGAGACC  491

seq1  CTATATCCCAAGGTTTCTCAGCCAATCAGAATGAAGTCCTTGTCATTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCCAAGGTTTCTCAGCCAATCAGAATGAAGTCCTTGTCATTTTA  541

seq1  TTCTATACCACTCAGAATAGTTTATTACATTATTAAATACATGTAACATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACCACTCAGAATAGTTTATTACATTATTAAATACATGTAACATG  591

seq1  AAGTACATTGTTGTTTAAGACTCATTGATTTAAACAGAACTGTTCTTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATTGTTGTTTAAGACTCATTGATTTAAACAGAACTGTTCTTATA  641

seq1  AAGTTCCATAGGCTTTTACATAAAAGAGAAGAGCTCATATAAAATTATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCATAGGCTTTTACATAAAAGAGAAGAGCTCATATAAAATTATAA  691

seq1  AGCTTTAATATAATATAACAGCCTATATTATAAGAGTCTCCCATTTTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAATATAATATAACAGCCTATATTATAAGAGTCTCCCATTTTTAA  741

seq1  AGAACCTACCAAAAATTTTTAATGATTTTATTAGAATGTCTGTTTGTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTACCAAAAATTTTTAATGATTTTATTAGAATGTCTGTTTGTGAA  791

seq1  TTCTGGAGTGTCATGTCTAATTATACTTAATGGATTTAAGCATCTCTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTGTCATGTCTAATTATACTTAATGGATTTAAGCATCTCTTTA  841

seq1  ATGGGATCTACAGCTTAACTCACCAGTATTATGTTCCGGAGCCTTCTGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATCTACAGCTTAACTCACCAGTATTATGTTCCGGAGCCTTCTGCC  891

seq1  TTTACAATGATCTTACTTTATTCTTATTTTGGGTGGCATTAAAAAGAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATGATCTTACTTTATTCTTATTTTGGGTGGCATTAAAAAGAAAT  941

seq1  GAAAGCCTACAATTCTGTCTCATCTTCCAATGGATATAGTGAAGAGTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTACAATTCTGTCTCATCTTCCAATGGATATAGTGAAGAGTACA  991

seq1  GTGCTTATTATAAAGTTAATGTGAATTACCATGTAATTGCCACTGACTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTATTATAAAGTTAATGTGAATTACCATGTAATTGCCACTGACTGC  1041

seq1  ACTGTAATGATTATTTAGTCACCACTAAGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  ACTGTAATGATTATTTAGTCACCACTAAGAATTC  1075