BAC Information

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BAC

Clone NameB6Ng01-072N02
Chromosome11 (Build37)
Map Location 68,078,204 - 68,237,563
singlet/doubletdoublet
Overlap geneNtn1
Upstream geneMyh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8
Downstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072N02.bB6Ng01-072N02.g
ACCDH890123DH890124
length1,159197
definitionDH890123|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N02, 5' end.DH890124|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,078,204 - 68,079,366)(68,237,367 - 68,237,563)
sequence
gaattcaagtggcttcagacagatgacagaggttccaggccttgcctgtc
cctgccactgattctgaattggtaacctcttcttcctggacttctctgca
aggcatcagtctactcttcactaagggttttgtctccgtggatctagagt
gtagaccttaacctcatgactactgttcatcacagtgtcctgggtgagag
cagggagtggagcttgtgttgcagggtgccctatccaaccatccactagt
actgtgcctggaccttaccaatggaggggacttccaagaactctggaata
gtgggaggcagctagtactgaccaatggcttcccacacccaagcatggcc
cttgccttctactggtgagcataagcagagaccgggcccttccagcagct
cacagggccaactggaggtcttctgaggctcctatgggaactcggtctac
ttttcctgggtgccctggctccagggaatgagatcaagcagaacctcaag
agccatcaatctagagcacaggctgatgggaaagagaggtgctggctgag
cactggtccctttgtaattgggaacaagaacaaacacagccttggtcctc
aatccagacaggatctggctgtcctctaggcctccaggagcccagaaaac
ttactactctagcctcatgttaagaactgactcacatgccaaggccctga
ggtgcataccctgaaatcctaatcccaagtgcccatgtatgagacaaata
tgaatcctttaaagaggtgactgtggcaaaaataggtcattggagtaggt
tctaatcaatgacaggtgtcctcacacaagatggggataaggtacaaggc
agctattgaggaaagtccacgtgaacgcacaggatgagggtgaccatctg
taaggccaggagaaaagcctgaagcagatccctccctcctggtcctcaaa
gggaatctgcccagctggcaccttgaccttggatttccagcctccagagc
tgggggagattactatctgttgtctaagtcagcaggtacacggtgctttg
ttctgtgtttcaggtgactagcacacctgtgctggcaccccagaacaagc
tatcgatccttagggtctcccaggccaggtgctggacttaatggagatgg
atctgcttt
ttttgggagtgttggaaatgttcaaacacctccactgtggtcatgagcaa
atgattttgagtatattaaaatacacagaagtgagtgagtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttactgaggactgta
cctattatgactgggttttgtgcacgctaagctagagctctatcgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68078204_68079366
seq2: B6Ng01-072N02.b_42_1200

seq1  GAATTCAAGTGGCTTCAGACAGATGACAGAGGATCCAGGCCTTGCCTGTC  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCAAGTGGCTTCAGACAGATGACAGAGGTTCCAGGCCTTGCCTGTC  50

seq1  CCTGCCACTGATTCTGAATTGGTAACCTCTTCTTCCTGGACTTCTCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCACTGATTCTGAATTGGTAACCTCTTCTTCCTGGACTTCTCTGCA  100

seq1  AGGCATCAGTCTACTCTTCACTAAGGGTTTTGTCTCCGTGGATCTAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCAGTCTACTCTTCACTAAGGGTTTTGTCTCCGTGGATCTAGAGT  150

seq1  GTAGACCTTAACCTCATGACTACTGTTCATCACAGTGTCCTGGGTGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCTTAACCTCATGACTACTGTTCATCACAGTGTCCTGGGTGAGAG  200

seq1  CAGGGAGTGGAGCTTGTGTTGCAGGGTGCCCTATCCAACCATCCACTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTGGAGCTTGTGTTGCAGGGTGCCCTATCCAACCATCCACTAGT  250

seq1  ACTGTGCCTGGACCTTACCAATGGAGGGGACTTCCAAGAACTCTGGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCCTGGACCTTACCAATGGAGGGGACTTCCAAGAACTCTGGAATA  300

seq1  GTGGGAGGCAGCTAGTACTGACCAATGGCTTCCCACACCCAAGCATGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGCAGCTAGTACTGACCAATGGCTTCCCACACCCAAGCATGGCC  350

seq1  CTTGCCTTCTACTGGTGAGCATAAGCAGAGACCGGGCCCTTCCAGCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTCTACTGGTGAGCATAAGCAGAGACCGGGCCCTTCCAGCAGCT  400

seq1  CACAGGGCCAACTGGAGGTCTTCTGAGGCTCCTATGGGAACTCGGTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGCCAACTGGAGGTCTTCTGAGGCTCCTATGGGAACTCGGTCTAC  450

seq1  TTTTCCTGGGTGCCCTGGCTCCAGGGAATGAGATCAAGCAGAACCTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGGTGCCCTGGCTCCAGGGAATGAGATCAAGCAGAACCTCAAG  500

seq1  AGCCATCAATCTAGAGCACAGGCTGATGGGAAAGAGAGGTGCTGGCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCAATCTAGAGCACAGGCTGATGGGAAAGAGAGGTGCTGGCTGAG  550

seq1  CACTGGTCCCTTTGTAATTGGGAACAAGAACAAACACAGCCTTGGTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTCCCTTTGTAATTGGGAACAAGAACAAACACAGCCTTGGTCCTC  600

seq1  AATCCAGACAGGATCTGGCTGTCCTCTAGGCCTCCAGGAGCCCAGAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGACAGGATCTGGCTGTCCTCTAGGCCTCCAGGAGCCCAGAAAAC  650

seq1  TTACTACTCTAGCCTCATGTTAAGAACTGACTCACATGCCAAGGCCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACTCTAGCCTCATGTTAAGAACTGACTCACATGCCAAGGCCCTGA  700

seq1  GGTGCATACCCTGAAATCCTAATCCCAAGTGCCCATGTATGAGACAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATACCCTGAAATCCTAATCCCAAGTGCCCATGTATGAGACAAATA  750

seq1  TGAATCCTTTAAAGAGGTGACTGTGGCAAAAATAGGTCATTGGAGTAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTTTAAAGAGGTGACTGTGGCAAAAATAGGTCATTGGAGTAGGT  800

seq1  TCTAATCAATGACAGGTGTCCTCACACAAGATGGGGATAAGGTACAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCAATGACAGGTGTCCTCACACAAGATGGGGATAAGGTACAAGGC  850

seq1  AGCTATTGAGGAAAGTCCACGTGAACGCACAGGATGAGGGTGACCATCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTGAGGAAAGTCCACGTGAACGCACAGGATGAGGGTGACCATCTG  900

seq1  TAAGGCCAGGAGAAAAGCCTGAAGCAGATCCCTCCCTCCTGGCCCTCAAA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAGGCCAGGAGAAAAGCCTGAAGCAGATCCCTCCCTCCTGGTCCTCAAA  950

seq1  GGGAATCTGCCCAGCTGGCACCTTGACCTTGGATTTCCAGCCTCCAGAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTGCCCAGCTGGCACCTTGACCTTGGATTTCCAGCCTCCAGAGC  1000

seq1  TGGGGGAGATTAACTATCTGTTGTCTAAGTCAGCAGGTACACGGTGCTTT  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGATT-ACTATCTGTTGTCTAAGTCAGCAGGTACACGGTGCTTT  1049

seq1  GTTCTGGTGTTTCAAGGTGACTAGCACACCTGTGCT-GCACCCCAG-ACA  1098
      ||||| ||||||| |||||||||||||||||||||| ||||||||| |||
seq2  GTTCT-GTGTTTC-AGGTGACTAGCACACCTGTGCTGGCACCCCAGAACA  1097

seq1  AGCTATCGATCCCTTAGGGCTCTCCCAGGCCAGTGCCTGGACTTTAAAGG  1148
      |||||||||| |||||||| |||||||||||||   |||||| |||| ||
seq2  AGCTATCGAT-CCTTAGGG-TCTCCCAGGCCAGGTGCTGGAC-TTAATGG  1144

seq1  AGATGGCTCTGCCTT  1163
      |||||| ||||| ||
seq2  AGATGGATCTGCTTT  1159

seq1: chr11_68237367_68237563
seq2: B6Ng01-072N02.g_72_268 (reverse)

seq1  CTGGATAGAGCTCTAGCCTAGAGTGCACAAAGCCCAGTCATAATAGGTTC  50
      || |||||||||||||| ||| ||||||||| |||||||||||||||| |
seq2  CTCGATAGAGCTCTAGCTTAGCGTGCACAAAACCCAGTCATAATAGGTAC  50

seq1  AGTCCTCAGTAAAACACACACACACACACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCAGTAAAACACACACACACACACACACACACACACACACACACA  100

seq1  CACACACACTCACTCACTTCTGTGTATTTTAATATACTCAAAATCATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTCACTCACTTCTGTGTATTTTAATATACTCAAAATCATTTG  150

seq1  CTCATGACCACAGTGGAGGTGTTTGAACATTTCCAACACTCCCAAAA  197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACCACAGTGGAGGTGTTTGAACATTTCCAACACTCCCAAAA  197