BAC Information

Click to search

BAC

Clone NameB6Ng01-072P19
Chromosome11 (Build37)
Map Location 71,065,757 - 71,066,756
singlet/doubletsinglet
Overlap geneNlrp1c
Upstream geneAlox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b
Downstream geneLOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072P19.bB6Ng01-072P19.g
ACCDH890248DH890249
length1,1591,004
definitionDH890248|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P19, 5' end.DH890249|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaata
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagagaatggatacaaaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaacttcctaggcaaa
tggatggacctggagggcatcatcctgagtgaggtaacacattcacaaag
gaactcacacaatatgtactcactgataagtggatattagcccaaaacct
aggatacccaagatataagatacaatttcctaaacacatgaaactcaaga
aaaatgaagactgaagtgtggacagtatgcccctccttagaagtgggaac
aaaacactcatggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagagatccaccccataatca
gcatccaaatgctgacaccattgcatacactagcaagattttatcgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacaggctcccaat
ggagagctagagaagtacccaaggagctaaagggatctgcatccctatag
tggaacaacattatgactaccagtatcccggagctctgactctagctgca
ttttgtatcaaagatggcctagtcgcatcacttgaagaaggtccatgaac
gcaactttatgccagtacagggaacgccaggcaaaaggggtggtgggttt
ttgggatct
gaattcaatctcaattgtcactgcccttgtcaccacaaagtggagtcctg
tactgggagagtggtaggaaccagccattggcaattgaactctggaagaa
gaagaggcaggcaacagtcaacaccagtactactcatctgatgtgtgcag
acctagtgtagagctcaggatacagcagacttcaggcagctggctctgaa
ttttttcctctgctgtctatgtgggctcctgattagtcatttaatctccc
aaatgtgtttcctcatctgtacatagggttaatgacaataacatgagaac
tgtgggtactgagtgatctaatgcaaacctccatgtaacacatgtaggga
gcagtcagctcttcctgtgatgatgatgaaggtgatgacaacaacaaaat
aggagtgtgtatgtaggtgtgtagctgtgtgtttttcagcgtgtgtttgt
gtgtgtttgaagtttggggtataagccaagaccttgtgtacactagataa
gggctcaacaatcaggtacacatcagcttttaatatgtacatatacatat
atatcccaataatgagagtctatttgatgatattagtggtaatttaccaa
gatcttcaactaaatttctcagtgctttctgtttatttatacttgggtag
gcaagtgccagattctgttggaggaaatgagcagtaacagtttctccagt
tgagacaatgactatgacagtgttggaggagggtaatacgttgttttgag
acagaatggttgtgtcagtcattatttgtgactataattcttggagggca
gggctgccgtatgcatggtcatgttctcaactccagggagttcttggaac
acaatggttgttagtgatgcaagagtgcagagagtacagagtttaaggtt
gaccctaaggacaggagaacttgagttgtaatgaggggagggatgctggc
ttactctatgaataaaataatcaccagaaagacattgttttaataatgga
gcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71065757_71066756
seq2: B6Ng01-072P19.g_70_1073

seq1  GAATTCAATCTCAATTGTCACTGCCCTTGTCACCACAAAGTGGAGTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTCAATTGTCACTGCCCTTGTCACCACAAAGTGGAGTCCTG  50

seq1  TACTGGGAGAGTGGTAGGAACCAGCCATTGGCAATTGAACTCTGGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGAGAGTGGTAGGAACCAGCCATTGGCAATTGAACTCTGGAAGAA  100

seq1  GAAGAGGCAGGCAACAGTCAACACCAGTACTACTCATCTGATGTGTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCAGGCAACAGTCAACACCAGTACTACTCATCTGATGTGTGCAG  150

seq1  ACCTAGTGTAGAGCTCAGGATACAGCAGACTTCAGGCAGCTGGCTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTGTAGAGCTCAGGATACAGCAGACTTCAGGCAGCTGGCTCTGAA  200

seq1  TTTTTTCCTCTGCTGTCTATGTGGGCTCCTGATTAGTCATTTAATCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTCTGCTGTCTATGTGGGCTCCTGATTAGTCATTTAATCTCCC  250

seq1  AAATGTGTTTCCTCATCTGTACATAGGGTTAATGACAATAACATGAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTTTCCTCATCTGTACATAGGGTTAATGACAATAACATGAGAAC  300

seq1  TGTGGGTACTGAGTGATCTAATGCAAACCTCCATGTAACACATGTAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTACTGAGTGATCTAATGCAAACCTCCATGTAACACATGTAGGGA  350

seq1  GCAGTCAGCTCTTCCTGTGATGATGATGAAGGTGATGACAACAACAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGCTCTTCCTGTGATGATGATGAAGGTGATGACAACAACAAAAT  400

seq1  AGGAGTGTGTATGTAGGTGTGTAGCTGTGTGTTTTTCAGCGTGTGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTGTATGTAGGTGTGTAGCTGTGTGTTTTTCAGCGTGTGTTTGT  450

seq1  GTGTGTTTGAAGTTTGGGGTATAAGCCAAGACCTTGTGTACACTAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGAAGTTTGGGGTATAAGCCAAGACCTTGTGTACACTAGATAA  500

seq1  GGGCTCAACAATCAGGTACACATCAGCTTTTAATATGTACATATACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAACAATCAGGTACACATCAGCTTTTAATATGTACATATACATAT  550

seq1  ATATCCCAATAATGAGAGTCTATTTGATGATATTAGTGGTAATTTACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCAATAATGAGAGTCTATTTGATGATATTAGTGGTAATTTACCAA  600

seq1  GATCTTCAACT-AATTTCTCAGTGCTTTCTGTTTATTTATACTTGGGTAG  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCAACTAAATTTCTCAGTGCTTTCTGTTTATTTATACTTGGGTAG  650

seq1  GCAAGTGCCAGATTCTGTTGGAGGAAATGAGCAGTAACAGTTTCTCCAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGCCAGATTCTGTTGGAGGAAATGAGCAGTAACAGTTTCTCCAGT  700

seq1  TGAGACAATGACTATGACAGTGTTGGAGGAGGGTAATACGTTG-TTTGAG  748
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGAGACAATGACTATGACAGTGTTGGAGGAGGGTAATACGTTGTTTTGAG  750

seq1  ACAGAATGGTTGTGTCAGTCATTATTTGTGACTATAATTCTTGGAGGGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGGTTGTGTCAGTCATTATTTGTGACTATAATTCTTGGAGGGCA  800

seq1  GGGCTGCCGTATGCATGGTCATGTTCTCAACTCCAGGGAGTTCTTGGAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCGTATGCATGGTCATGTTCTCAACTCCAGGGAGTTCTTGGAAC  850

seq1  ACAATGGTTGTTAGTGATGCAGGAGTGCAGAGAGTACAGAGGTTTAAGG-  897
      ||||||||||||||||||||| |||||||||||||||||| |||||||| 
seq2  ACAATGGTTGTTAGTGATGCAAGAGTGCAGAGAGTACAGA-GTTTAAGGT  899

seq1  TGAACCTAAGGACAGGAGAACCTGAG-TGTAATGAGGGGAGGGATGCT-G  945
      ||| ||||||||||||||||| |||| ||||||||||||||||||||| |
seq2  TGACCCTAAGGACAGGAGAACTTGAGTTGTAATGAGGGGAGGGATGCTGG  949

seq1  TGTACATCAGGAATAAAATAATCACCAGATAGACCATGTTTTAGATAAT-  994
        |||   | ||||||||||||||||||| ||||  ||||||| ||||| 
seq2  CTTACTCTATGAATAAAATAATCACCAGAAAGACATTGTTTTA-ATAATG  998

seq1  GAGCAA  1000
      ||||||
seq2  GAGCAA  1004