BAC Information

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BAC

Clone NameB6Ng01-073C21
Chromosome11 (Build37)
Map Location 88,387,919 - 88,559,535
singlet/doubletdoublet
Overlap geneMsi2, LOC100038945
Upstream geneSept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793
Downstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073C21.bB6Ng01-073C21.g
ACCDH890388DH890389
length1,168599
definitionDH890388|Mus musculus domesticus DNA, BAC clone: B6Ng01-073C21, 5' end.DH890389|Mus musculus domesticus DNA, BAC clone: B6Ng01-073C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,387,919 - 88,389,083)(88,558,451 - 88,559,535)
sequence
gaattcatctcgggctttatgtaactatccccaaatgttagtttacccct
tctcctcagcccgtcaagtagatgtcattgtttcttggttttgtttttta
aaaagcaggcatactgagcacaaatggacccatgtggacgctccaccgcc
cgttcttttatgagaatgtttattaccaagttctcagctcatgggtgttg
agttagcaaagtcaaggagccatttcataaagcctagtgaagtttccatt
cgggcctgacacattcagaaatgcagccagagaaactgtgtgagacagca
cacatgtccctgggtacagtcctctagctggtggctgttgcagccatcca
gagcacttcacttgtccctaaatagcaatacctgggaccatgcccaagaa
gcagccaggcccctgacctttgctccttgcccactaaaacatgactggca
agggccaacctttccttcccctgacccctgtctttgtgactactcaataa
gatttttttccaaacagaatacaaaagtagcctccactgctgttagggta
agacctattgaaataagctcataactgactgtaatgatatccagttatgt
gaaattattattttgaggctcaaggtagagcccgggaaatgtgtctaagc
agtaacttacagctacagtccaaatgcagcctgctggctggtttttgtaa
atgaaacctggaatccagccacgcacattcatttacatattgtctgtggc
tgttttgtgcctaacagcaaaaccaagtgactgagatggggactgtatgg
tctacagaatctaaaattgtgtgtttatacggctctctacagataaagtc
tgccaaccctagtggaaaagagcagggtgctcagaaatcaaataccagga
aaaatccacttatgaaaactagactactgagtatacccaatgcatataaa
aatggcatcttcttggttgttttttgttgttattattgttgttaaaggtg
gggagcttgtccctagaattaatgcattaattggcaagaacttacccaac
tttctctggacctccactgtcactccagaagttcagatgcactgatgaga
ggcatctttcgggatcatccccttgattggcttccagtctctaaacgatt
catgcaggtaccatgtag
gaattcttaatctgaacaaagggggctgtcccagtgtcttcattccacac
aaaccccattttccagggtttagacatgacttaggactttttagatggct
catctagccctgcctggtgcttttgtttccttgacgctgggggcaaacag
gaactgcagagtttggtagtctgcttagaaggagagagcagattctggac
agaaagatctgtgatgtgcatgaggtgacagggacagggatgagggacag
tgttgagatgggcagcgtttgggtcctaggggtcacaggacctgggatta
tgctctgcgagcccacaaaaccaatcattcaagttgggtaagtttgtcag
agctcaagaaaaaaaccacagtgctcagccagcagcctgggagatgctga
ccctcgagacttcctgtcagggcttgggaaagcctcagatgtcttaggat
tctggagtggggtccaattcttgctctgttccatgataggccctctatgt
actgtttgctgggtggcgtttcccaggtccagggagtaattgtaagtgga
cccccagcactctgttgaggtggatgtggttgttagtgtgttttatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88387919_88389083
seq2: B6Ng01-073C21.b_42_1209

seq1  GAATTCATCTCGGGCTTTATGTAACTATCCCCAAATGTTAGTTTACCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCGGGCTTTATGTAACTATCCCCAAATGTTAGTTTACCCCT  50

seq1  TCTCCTCAGCCCGTCAAGTAGATGTCATTGTTTCTTGGTTTTGTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAGCCCGTCAAGTAGATGTCATTGTTTCTTGGTTTTGTTTTTTA  100

seq1  AAAAGCAGGCATACTGAGCACAAATGGACCCATGTGGACGCTCCACCGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGGCATACTGAGCACAAATGGACCCATGTGGACGCTCCACCGCC  150

seq1  CGTTCTTTTATGAGAATGTTTATTACCAAGTTCTCAGCTCATGGGTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTTTATGAGAATGTTTATTACCAAGTTCTCAGCTCATGGGTGTTG  200

seq1  AGTTAGCAAAGTCAAGGAGCCATTTCATAAAGCCTAGTGAAGTTTCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCAAAGTCAAGGAGCCATTTCATAAAGCCTAGTGAAGTTTCCATT  250

seq1  CGGGCCTGACACATTCAGAAATGCAGCCAGAGAAACTGTGTGAGACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCTGACACATTCAGAAATGCAGCCAGAGAAACTGTGTGAGACAGCA  300

seq1  CACATGTCCCTGGGTACAGTCCTCTAGCTGGTGGCTGTTGCAGCCATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTCCCTGGGTACAGTCCTCTAGCTGGTGGCTGTTGCAGCCATCCA  350

seq1  GAGCACTTCACTTGTCCCTAAATAGCAATACCTGGGACCATGCCCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTCACTTGTCCCTAAATAGCAATACCTGGGACCATGCCCAAGAA  400

seq1  GCAGCCAGGCCCCTGACCTTTGCTCCTTGCCCACTAAAACATGACTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGGCCCCTGACCTTTGCTCCTTGCCCACTAAAACATGACTGGCA  450

seq1  AGGGCCAACCTTTCCTTCCCCTGACCCCTGTCTTTGTGACTACTCAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAACCTTTCCTTCCCCTGACCCCTGTCTTTGTGACTACTCAATAA  500

seq1  GATTTTTTTCCAAACAGAATACAAAAGTAGCCTCCACTGCTGTTAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTCCAAACAGAATACAAAAGTAGCCTCCACTGCTGTTAGGGTA  550

seq1  AGACCTATTGAAATAAGCTCATAACTGACTGTAATGATATCCAGTTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTATTGAAATAAGCTCATAACTGACTGTAATGATATCCAGTTATGT  600

seq1  GAAATTATTATTTTGAGGCTCAAGGTAGAGCCCGGGAAATGTGTCTAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATTATTTTGAGGCTCAAGGTAGAGCCCGGGAAATGTGTCTAAGC  650

seq1  AGTAACTTACAGCTACAGTCCAAATGCAGCCTGCTGGCTGGTTTTTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTACAGCTACAGTCCAAATGCAGCCTGCTGGCTGGTTTTTGTAA  700

seq1  ATGAAACCTGGAATCCAGCCACGCACATTCATTTACATATTGTCTGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCTGGAATCCAGCCACGCACATTCATTTACATATTGTCTGTGGC  750

seq1  TGTTTTGTGCCTAACAGCAAAACCAAGTGACTGAGATGGGGACTGTATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGCCTAACAGCAAAACCAAGTGACTGAGATGGGGACTGTATGG  800

seq1  TCTACAGAATCTAAAA-TGTGTG-TTATACGGCTCTCTACAGATAAAGTC  848
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TCTACAGAATCTAAAATTGTGTGTTTATACGGCTCTCTACAGATAAAGTC  850

seq1  TGCCAACCCTAGTGGAAAAGAGCAGGGTGCTCAGAAATCAAATACCAGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACCCTAGTGGAAAAGAGCAGGGTGCTCAGAAATCAAATACCAGGA  900

seq1  AAAATCCACTTAATGAAAACTAGACTACTGAGTATACCCAATGCATATAA  948
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  AAAATCCACTT-ATGAAAACTAGACTACTGAGTATACCCAATGCATAT-A  948

seq1  AAAATGGCATCTTCTTGTTGTTG-TTTTTGTTGTTATTATTGTTGTTTAA  997
      |||||||||||||||||  |||| ||||||||||||||||||||| ||||
seq2  AAAATGGCATCTTCTTG--GTTGTTTTTTGTTGTTATTATTGTTG-TTAA  995

seq1  AGGGTGGGAGCTTGT-CCTAGAATTAATGCATTTAATTGGCAAGACTTTA  1046
      |||  |||||||||| ||||||||||||||| |||||||||||||  |||
seq2  AGGTGGGGAGCTTGTCCCTAGAATTAATGCA-TTAATTGGCAAGAACTTA  1044

seq1  CACAACTTTCTCT-GACCTCAACTGTCACT-CAGATGTCAAGATGCACT-  1093
      | ||||||||||| |||||| ||||||||| |||| ||  ||||||||| 
seq2  CCCAACTTTCTCTGGACCTCCACTGTCACTCCAGAAGTTCAGATGCACTG  1094

seq1  -TGAGGAGGCATC-TTCGG--CCATCCCCTTGATTGGCTACCCAGTCTCT  1139
       ||| |||||||| |||||   |||||||||||||||||  |||||||||
seq2  ATGA-GAGGCATCTTTCGGGATCATCCCCTTGATTGGCT-TCCAGTCTCT  1142

seq1  AACAGATTCCATGCAGGCA-CATGTAG  1165
      ||  |||| |||||||| | |||||||
seq2  AAACGATT-CATGCAGGTACCATGTAG  1168

seq1: chr11_88558451_88559535
seq2: B6Ng01-073C21.g_69_667 (reverse)

seq1  CCCATAACTCCATGAACTTGGACGTGTAACCTGCCACTTCCACGAACTGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AATTAAAGCAACTGTGGGCACGAATAGCAATGGCAGGCGCGGACGGGGCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTCTCCCCTCCACTCTCAGGAAACTGTAAAGACGCCTGGAGGAGAGAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGCATGAGAGCTTCCTCTTTGTCACAATAAACCAGCCGAAAACTAGCC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGACTTTCCACAATGGTGCCCCCCGAGACTCCCCAAAAGGACGATGAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAAGGCAACAGACTCGGAGCCCCAAAGCAGGGAGGGGCTCTCAGAGACCC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCCACTCCCAACCTGACACTTATTTGCTGTTTCTGTATTAATTACAATAA  350
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGCTTCATAGCCTGGTGACCACTTAATGGAGCAGCAAATATGGCTCTT  400
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCTACAATTAGTCAATGTAATCTGCTGCTCTTCCACTCCTCCTGGCCA  450
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCCTTTGGCTTCTACATACCCCACCCTCCCCCAGCCCCCAT-AAACAC  499
                                            ||||| ||||||
seq2  --------------------------------------CCCATAAAACAC  12

seq1  ACTAACAACCACATCCACCTC-ACAGAGTGCTGGGGGTCCACTTACAATT  548
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTAACAACCACATCCACCTCAACAGAGTGCTGGGGGTCCACTTACAATT  62

seq1  ACTCCCTGGACCTGGGAAACGCCACCCAGCAAACAGTACATAGAGGGCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTGGACCTGGGAAACGCCACCCAGCAAACAGTACATAGAGGGCCT  112

seq1  ATCATGGAACAGAGCAAGAATTGGACCCCACTCCAGAATCCTAAGACATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAACAGAGCAAGAATTGGACCCCACTCCAGAATCCTAAGACATC  162

seq1  TGAGGCTTTCCCAAGCCCTGACAGGAAGTCTCGAGGGTCAGCATCTCCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTTCCCAAGCCCTGACAGGAAGTCTCGAGGGTCAGCATCTCCCA  212

seq1  GGCTGCTGGCTGAGCACTGTGGTTTTTTTCTTGAGCTCTGACAAACTTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGCTGAGCACTGTGGTTTTTTTCTTGAGCTCTGACAAACTTAC  262

seq1  CCAACTTGAATGATTGGTTTTGTGGGCTCGCAGAGCATAATCCCAGGTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGAATGATTGGTTTTGTGGGCTCGCAGAGCATAATCCCAGGTCC  312

seq1  TGTGACCCCTAGGACCCAAACGCTGCCCATCTCAACACTGTCCCTCATCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCCTAGGACCCAAACGCTGCCCATCTCAACACTGTCCCTCATCC  362

seq1  CTGTCCCTGTCACCTCATGCACATCACAGATCTTTCTGTCCAGAATCTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTGTCACCTCATGCACATCACAGATCTTTCTGTCCAGAATCTGC  412

seq1  TCTCTCCTTCTAAGCAGACTACCAAACTCTGCAGTTCCTGTTTGCCCCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTTCTAAGCAGACTACCAAACTCTGCAGTTCCTGTTTGCCCCCA  462

seq1  GCGTCAAGGAAACAAAAGCACCAGGCAGGGCTAGATGAGCCATCTAAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAAGGAAACAAAAGCACCAGGCAGGGCTAGATGAGCCATCTAAAAA  512

seq1  GTCCTAAGTCATGTCTAAACCCTGGAAAATGGGGTTTGTGTGGAATGAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAGTCATGTCTAAACCCTGGAAAATGGGGTTTGTGTGGAATGAAG  562

seq1  ACACTGGGACAGCCCCCTTTGTTCAGATTAAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGACAGCCCCCTTTGTTCAGATTAAGAATTC  599