BAC Information

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BAC

Clone NameB6Ng01-073H04
Chromosome11 (Build37)
Map Location 20,109,501 - 20,267,629
singlet/doubletdoublet
Overlap geneRab1, Cep68, LOC216544, Slc1a4, LOC100042746
Upstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2
Downstream geneLOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035, Peli1, Vps54, Ugp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073H04.bB6Ng01-073H04.g
ACCDH890578DH890579
length1,053734
definitionDH890578|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H04, 5' end.DH890579|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,109,501 - 20,110,549)(20,266,894 - 20,267,629)
sequence
gaattcactctgtagaccaggctggtcttgaactcacagagatcctcctg
tctttgcttccagagtgctgggattaagggcatgtgccagcatcgcctgg
tcaacaattattatttgagacaggttcctttgtttgtttgtttgtttttt
cctagacagtgtttctctgtgtagccctggctgtcctggaactcactttg
tagaccaggctggcctcgaactctgaactcgaaatctgcctgcctttgcc
tcccaagtgctgggactaaaggcgtgcgccaccactacccggccaggttc
ctatttttaaaatgtatttatctgttttttatgtggatgggtgtgttacc
tgcatacacatctctatatcatgtgtatggctggtgcctgtggaggccag
agaagttggatcccctggaagtagttattcatagttgtgagttgcattgt
ttattactgggaattgaacctaggtcttctggtacagcagccaatgctct
taaccactaagccatctctccagtcccatatttattttaatttttttact
ttatctctatctatgtatatctgtgtggaagtgttttaaatataatgtag
gtgcttgtggaggactgaggcatgggatctctctggagctggagttgcag
gtggttgtgagccaagttcatatcctctgacagagcagtatgtgacatta
ataatccctgagccatttctccagccccaagataggtttcttgtactcag
ggctagccttcacctcacaatttagctgtgtatgcccttgggtttatggt
cctcctttattttctctaggctaggattacagtatgggcatgtgtcttta
ggctgggttaacgtggtactggtgattaaacccagggtttcatgcatgct
aagcagacattcttcctactgagctgtcctcagccctgatctggatgtct
ttgaaatgtggcctagactgcctcttacttttttttataagtaattttta
gaatttatttatttatttatttaatttatttattaattaatatgtaggga
cac
gaattcacagcgcccatctgaccctgttcctcagtttcttcttacaaaaa
gcatttcttgcatcatgagacaattaatagatttaagtgtgtgtgcgtgc
ttgtgtgcttgtgtgtgtgtgtgtgtgtgcaggtgcatgtatacagcagt
gtgcaaatgtatgtggaggccacgtgaaatatcttcctcaatcactctcc
tccgtgttttactacatttctatttattttgtaggggaaggggagtgtgt
gtgccacaatgtaggtatggaggtcagagaacgacttgttccacttgttg
gtactaggaatcaacctgtcagacttggtgtcaagagccctgcgctggaa
cctgtgggtcacagatcccacccagcaaggacaggtcagaaggcctcagg
gatgcctctgtctctgcctccccatcgctggagttacaggcgcgcatgcg
catcgcacacgtgcactcagccgcctatacccagcttctcaatggttgct
gggcatccaactcagatcctcattcctgaacagcgagcatttatcatcgg
agtcatgtctccagcacttaggcttctgtgttctgaagtccaagctcaag
atggcaaaggagtgaggccagggtagaccgcaggactcagagatgacagg
gctggaaggaaaagtgtcagctcaggacccccagaacctatttttcaccc
aaaaaagatttatttgctccagagtgacagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_20109501_20110549
seq2: B6Ng01-073H04.b_32_1084

seq1  GAATTCACTCTGTAGACCAGGCTGGTCTTGAACTCACAGAGATCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGTCTTGAACTCACAGAGATCCTCCTG  50

seq1  TCTTTGCTTCCAGAGTGCTGGGATTAAGGGCATGTGCCAGCATCGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTCCAGAGTGCTGGGATTAAGGGCATGTGCCAGCATCGCCTGG  100

seq1  TCAACAATTATTATTTGAGACAGGTTCCTTTGTTTGTTTGTTTGTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATTATTATTTGAGACAGGTTCCTTTGTTTGTTTGTTTGTTTTTT  150

seq1  CCTAGACAGTGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACAGTGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTG  200

seq1  TAGACCAGGCTGGCCTCGAACTCTGAACTCGAAATCTGCCTGCCTTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCTGAACTCGAAATCTGCCTGCCTTTGCC  250

seq1  TCCCAAGTGCTGGGACTAAAGGCGTGCGCCACCACTACCCGGCCAGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGGACTAAAGGCGTGCGCCACCACTACCCGGCCAGGTTC  300

seq1  CTATTTTTAAAATGTATTTATCTGTTTTTTATGTGGATGGGTGTGTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTAAAATGTATTTATCTGTTTTTTATGTGGATGGGTGTGTTACC  350

seq1  TGCATACACATCTCTATATCATGTGTATGGCTGGTGCCTGTGGAGGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACACATCTCTATATCATGTGTATGGCTGGTGCCTGTGGAGGCCAG  400

seq1  AGAAGTTGGATCCCCTGGAAGTAGTTATTCATAGTTGTGAGTTGCATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGGATCCCCTGGAAGTAGTTATTCATAGTTGTGAGTTGCATTGT  450

seq1  TTATTACTGGGAATTGAACCTAGGTCTTCTGGTACAGCAGCCAATGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTGGGAATTGAACCTAGGTCTTCTGGTACAGCAGCCAATGCTCT  500

seq1  TAACCACTAAGCCATCTCTCCAGTCCCATATTTATTTTAATTTTTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTAAGCCATCTCTCCAGTCCCATATTTATTTTAATTTTTTTACT  550

seq1  TTATCTCTATCTATGTATATCTGTGTGGAAGTGTTTTAAATATAATGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTATCTATGTATATCTGTGTGGAAGTGTTTTAAATATAATGTAG  600

seq1  GTGCTTGTGGAGGACTGAGGCATGGGATCTCTCTGGAGCTGGAGTTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTGGAGGACTGAGGCATGGGATCTCTCTGGAGCTGGAGTTGCAG  650

seq1  GTGGTTGTGAGCCAAGTTCATATCCTCTGACAGAGCAGTATGTGACATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTGAGCCAAGTTCATATCCTCTGACAGAGCAGTATGTGACATTA  700

seq1  ATAATCCCTGAGCCATTTCTCCAGCCCCAAGATAGGTTTCTTGTACTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCCTGAGCCATTTCTCCAGCCCCAAGATAGGTTTCTTGTACTCAG  750

seq1  GGCTAGCCTTCACCTCACAATTTAGCTGTGTATGCCCTTGGGTTTATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCTTCACCTCACAATTTAGCTGTGTATGCCCTTGGGTTTATGGT  800

seq1  CCTCCTTTATCTTCTCTAGGCTAGGATTACAGTATGGGCATGTGTCTTTA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTATTTTCTCTAGGCTAGGATTACAGTATGGGCATGTGTCTTTA  850

seq1  GGCTGGGTTAACGTGGTACTGGTGATTAAACCCAGGGTTTCATGCATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTTAACGTGGTACTGGTGATTAAACCCAGGGTTTCATGCATGCT  900

seq1  AAGCAGACATTCTTCCTACTGAGCTGTCCTCAGCCCTGATCTGGATGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACATTCTTCCTACTGAGCTGTCCTCAGCCCTGATCTGGATGTCT  950

seq1  CTGAAATGT-GCCTAGACTGCCTCTTACTTTTTTTTATAAGTAATTTTAA  999
       |||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  TTGAAATGTGGCCTAGACTGCCTCTTACTTTTTTTTATAAGTAATTTTTA  1000

seq1  G-ATTTATTTATTTATTTATTT-ATTTATTTATTAATT-ATATGTAGGTA  1046
      | |||||||||||||||||||| ||||||||||||||| ||||||||| |
seq2  GAATTTATTTATTTATTTATTTAATTTATTTATTAATTAATATGTAGGGA  1050

seq1  CAC  1049
      |||
seq2  CAC  1053

seq1: chr11_20266894_20267629
seq2: B6Ng01-073H04.g_68_801 (reverse)

seq1  CCCTCTGTCCCTCTGGAGCAAATAAATCTTTTTTGTGTTGAAAACTTGGT  50
      ||||||||| ||||||||||||||||||||||||| | |||||| | |||
seq2  CCCTCTGTCACTCTGGAGCAAATAAATCTTTTTTG-GGTGAAAAATAGGT  49

seq1  TCTGGGGGTCCTGAGCTGACACTTTTCCTTCCAGCCCTGTCATCTCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGGTCCTGAGCTGACACTTTTCCTTCCAGCCCTGTCATCTCTGAG  99

seq1  TCCTTGCGGTCTACCCTGGCCTCACTCCTTTGCCATCTTGAGCTTGGACT  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCC-TGCGGTCTACCCTGGCCTCACTCCTTTGCCATCTTGAGCTTGGACT  148

seq1  TCAGAACACAGAAGCCTAAGTGCTGGAGACATGACTCCGATGATAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACACAGAAGCCTAAGTGCTGGAGACATGACTCCGATGATAAATGC  198

seq1  TCGCTGTTCAGGAATGAGGATCTGAGTTGGATGCCCAGCAACCATTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGTTCAGGAATGAGGATCTGAGTTGGATGCCCAGCAACCATTGAGA  248

seq1  AGCTGGGTATAGGCGGCTGAGTGCACGTGTGCGATGCGCATGCGCGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTATAGGCGGCTGAGTGCACGTGTGCGATGCGCATGCGCGCCTG  298

seq1  TAACTCCAGCGATGGGGAGGCAGAGACAGAGGCATCCCTGAGGCCTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGCGATGGGGAGGCAGAGACAGAGGCATCCCTGAGGCCTTCTG  348

seq1  ACCTGTCCTTGCTGGGTGGGATCTGTGACCCACAGGTTCCAGCGCAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCCTTGCTGGGTGGGATCTGTGACCCACAGGTTCCAGCGCAGGGC  398

seq1  TCTTGACACCAAGTCTGACAGGTTGATTCCTAGTACCAACAAGTGGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACACCAAGTCTGACAGGTTGATTCCTAGTACCAACAAGTGGAACA  448

seq1  AGTCGTTCTCTGACCTCCATACCTACATTGTGGCACACACACTCCCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTTCTCTGACCTCCATACCTACATTGTGGCACACACACTCCCCTTC  498

seq1  CCCTACAAAATAAATAGAAATGTAGTAAAACACGGAGGAGAGTGATTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACAAAATAAATAGAAATGTAGTAAAACACGGAGGAGAGTGATTGAG  548

seq1  GAAGATATTTCACGTGGCCTCCACATACATTTGCACACTGCTGTATACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATTTCACGTGGCCTCCACATACATTTGCACACTGCTGTATACAT  598

seq1  GCACCTGCACACACACACACACACACAAGCACACAAGCACGCACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGCACACACACACACACACACAAGCACACAAGCACGCACACACAC  648

seq1  TTAAATCTATTAATTGTCTCATGATGCAAGAAATGCTTTTTGTAAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTATTAATTGTCTCATGATGCAAGAAATGCTTTTTGTAAGAAGA  698

seq1  AACTGAGGAACAGGGTCAGATGGGCGCTGTGAATTC  736
      ||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGAACAGGGTCAGATGGGCGCTGTGAATTC  734