BAC Information

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BAC

Clone NameB6Ng01-073P04
Chromosome11 (Build37)
Map Location 39,994,838 - 40,090,757
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073P04.bB6Ng01-073P04.g
ACCDH890930DH890931
length1,107137
definitionDH890930|Mus musculus domesticus DNA, BAC clone: B6Ng01-073P04, 5' end.DH890931|Mus musculus domesticus DNA, BAC clone: B6Ng01-073P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,089,632 - 40,090,757)(39,994,838 - 39,994,974)
sequence
gaattctgagtctcccagcagccaccacagttacattaacctacaaggag
acgcacattctatccaaaggacagaaatgaattaacacttcctattgatt
actaaaccttctcatctttcattaagagattgctgatggtttcttctggt
agaccccagtgcgtcatcacttttttttgccaagtaccagtgcaccatag
ttttctctgagccattgtgtctaatccactctgtcttcttatattgaaat
taacaaggcatatacccagaggcataggctgtgtctacaacagtgaggca
caaatgaacttgaagatgaggtcaatcaagtgcacagaatacatcacaca
gttattccaagcctcatgctgtgtctataattgccccttgttctgtcatt
agagctcccttacaagtcattattttgagtcagcagagctacatggagtg
ttcctcctgatgcttagtataaacttgaattgataacataaatatctcct
agcacagagcacaaagagcaggtatttagattagatctaataaagagtgc
agctgttcatttctttatgaatctaagctaaaacaatatgcactactttc
aatatggattctgcttcaacagctctgtgatggagaaactgtgttgctga
aataagtggacatacactctattagaatttgcctctctgctttgatcccc
tttgcttttatttagtcaacaccagcattatatagcctgcatgggaattt
tgttgtagtcagtactgtatatatttttttttctgctttaaagtacaaac
atcacttattcatttgttttgttgggggaaagtggtgttttaatgctaaa
ataacatagcaggtttgtggcctcaagcatagttttagatgtattatctt
cactgagagcaggaaaattcaaatttcagctcaaagatggtagctgacag
agttcagagaaggcttgtagagagatcagcacatttgtatgtatgtgtgt
gggggatccggcccttgacaaaagtatgtagcagagattggagaagaaag
tacaagtgactttgagtaccaggcccaatgatattggatgtttttgcaat
tggctga
aaaaaataatatatataagatacttcttatatgtagcagaggactatctt
ttctggcctcagtgggaaaagatacacctagtcttgtagagacttgatac
cccagggaagtgtgatgtgaggaggtggtgtggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40089632_40090757
seq2: B6Ng01-073P04.b_45_1151 (reverse)

seq1  TCAGCCAAATTTTGCAAAAACATCTCAATATCATTTGGGTGCCTGGGTAC  50
      ||||||||   ||||||||||||| ||||||||||   | |||| |||||
seq2  TCAGCCAA---TTGCAAAAACATC-CAATATCATT---GGGCCT-GGTAC  42

seq1  TTCAAAAGTCACTTTGTACTTTTCTCTCCATTCTTCCTGCTACATACTTT  100
      |   |||||||| |||||||||  |||||| |||  ||||||||||| ||
seq2  T--CAAAGTCAC-TTGTACTTTCTTCTCCAATCT--CTGCTACATAC-TT  86

seq1  TTGTCCAGGGGCCGGAT-CCCCACACACATACATACAAATGTGCTGAATT  149
      |||| || ||||||||| |||||||||||||||||||||||||||||  |
seq2  TTGT-CAAGGGCCGGATCCCCCACACACATACATACAAATGTGCTGA--T  133

seq1  CTTCTCTACAAGCCTTCTCTGAACTCTGTCAGCTACCATCTTTTGAGCCT  199
      | |||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  C-TCTCTACAAGCCTTCTCTGAACTCTGTCAGCTACCATC-TTTGAG-CT  180

seq1  GAAATTTGAATTTTCCTGCTCTCAGTGAAGATAATACATCTAAAACTATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGAATTTTCCTGCTCTCAGTGAAGATAATACATCTAAAACTATG  230

seq1  CTTGAGGCCACAAACCTGCTATGTTATTTTAGCATTAAAACACCACTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGCCACAAACCTGCTATGTTATTTTAGCATTAAAACACCACTTTC  280

seq1  CCCCAACAAAACAAATGAATAAGTGATGTTTGTACTTTAAAGCAGAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACAAAACAAATGAATAAGTGATGTTTGTACTTTAAAGCAGAAAAA  330

seq1  AAAATATATACAGTACTGACTACAACAAAATTCCCATGCAGGCTATATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATACAGTACTGACTACAACAAAATTCCCATGCAGGCTATATAA  380

seq1  TGCTGGTGTTGACTAAATAAAAGCAAAGGGGATCAAAGCAGAGAGGCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGTTGACTAAATAAAAGCAAAGGGGATCAAAGCAGAGAGGCAAA  430

seq1  TTCTAATAGAGTGTATGTCCACTTATTTCAGCAACACAGTTTCTCCATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAGAGTGTATGTCCACTTATTTCAGCAACACAGTTTCTCCATCA  480

seq1  CAGAGCTGTTGAAGCAGAATCCATATTGAAAGTAGTGCATATTGTTTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGTTGAAGCAGAATCCATATTGAAAGTAGTGCATATTGTTTTAG  530

seq1  CTTAGATTCATAAAGAAATGAACAGCTGCACTCTTTATTAGATCTAATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTCATAAAGAAATGAACAGCTGCACTCTTTATTAGATCTAATCT  580

seq1  AAATACCTGCTCTTTGTGCTCTGTGCTAGGAGATATTTATGTTATCAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTGCTCTTTGTGCTCTGTGCTAGGAGATATTTATGTTATCAATT  630

seq1  CAAGTTTATACTAAGCATCAGGAGGAACACTCCATGTAGCTCTGCTGACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTATACTAAGCATCAGGAGGAACACTCCATGTAGCTCTGCTGACT  680

seq1  CAAAATAATGACTTGTAAGGGAGCTCTAATGACAGAACAAGGGGCAATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATGACTTGTAAGGGAGCTCTAATGACAGAACAAGGGGCAATTA  730

seq1  TAGACACAGCATGAGGCTTGGAATAACTGTGTGATGTATTCTGTGCACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACAGCATGAGGCTTGGAATAACTGTGTGATGTATTCTGTGCACTT  780

seq1  GATTGACCTCATCTTCAAGTTCATTTGTGCCTCACTGTTGTAGACACAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACCTCATCTTCAAGTTCATTTGTGCCTCACTGTTGTAGACACAGC  830

seq1  CTATGCCTCTGGGTATATGCCTTGTTAATTTCAATATAAGAAGACAGAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCTCTGGGTATATGCCTTGTTAATTTCAATATAAGAAGACAGAGT  880

seq1  GGATTAGACACAATGGCTCAGAGAAAACTATGGTGCACTGGTACTTGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGACACAATGGCTCAGAGAAAACTATGGTGCACTGGTACTTGGCA  930

seq1  AAAAAAAGTGATGACGCACTGGGGTCTACCAGAAGAAACCATCAGCAATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTGATGACGCACTGGGGTCTACCAGAAGAAACCATCAGCAATC  980

seq1  TCTTAATGAAAGATGAGAAGGTTTAGTAATCAATAGGAAGTGTTAATTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAAAGATGAGAAGGTTTAGTAATCAATAGGAAGTGTTAATTCA  1030

seq1  TTTCTGTCCTTTGGATAGAATGTGCGTCTCCTTGTAGGTTAATGTAACTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCCTTTGGATAGAATGTGCGTCTCCTTGTAGGTTAATGTAACTG  1080

seq1  TGGTGGCTGCTGGGAGACTCAGAATTC  1126
      |||||||||||||||||||||||||||
seq2  TGGTGGCTGCTGGGAGACTCAGAATTC  1107

seq1: chr11_39994838_39994974
seq2: B6Ng01-073P04.g_73_209

seq1  AAAAAATAATATATATAAGATACTTCTTATATGTAGCAGAGGACTATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAATATATATAAGATACTTCTTATATGTAGCAGAGGACTATCTT  50

seq1  TTCTGGCCTCAGTGGGAAAAGATACACCTAGTCTTGTAGAGACTTGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCTCAGTGGGAAAAGATACACCTAGTCTTGTAGAGACTTGATAC  100

seq1  CCCAGGGAAGTGTGATGTGAGGAGGTGGTGTGGGGGA  137
      |||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAAGTGTGATGTGAGGAGGTGGTGTGGGGGA  137