BAC Information

Click to search

BAC

Clone NameB6Ng01-074C24
Chromosome11 (Build37)
Map Location 42,703,791 - 42,704,811
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg2, Gabra1, Gabra6, Gabrb2
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074C24.bB6Ng01-074C24.g
ACCDH891108DH891109
length1,0751,100
definitionDH891108|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C24, 5' end.DH891109|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccacatactattgaaaaaatgtgcatttctattccttggtgag
ctgttttatagatatgagttgtcctgatatatgtattatgtggtattaag
tcatatattagtagaatatttctgcttagtttttaaaatttgtttttgag
ggattacatttaagcctataattgttattcaacaattgttcatattttca
gttctatcagcttttcttttatgaattttagtacttttctgttgtctgta
catattggtaattggtaattgaagtattcttgaatacttcattattttaa
aaatcctccctgtctttactgacattttccccataaagtttgtttctggt
actaatatgggcgtacagcatttacaccattaatgtcttcacagtatatg
cctttcctcatcttttaaaaaaaccttgtatcattgtatcagtgtattag
ctagcatattgctggttttatattctgttattgccttttgcttaaagtgc
ttaaatctatttacacttaatgtttggtttacttacttacttatttgcta
ttttcttgacacagtgttctactatatgaccaaagctagcctcaaactca
gactaaaatacaacctgatacctgccaccccatccccacttcattcttcc
aagtgctagaatgatagctgcatatgaccacacctgatccaagtggctta
tttatgtggcagtttgaagtagaatgctccccataggctcatgcgcttgg
attcttgtttccagttagtggaatggttttgggaagaattaggagatgtg
gccttgttggaggaggtgagtaagcccacaccaggcctaatctctctttc
tcttcctgttgttgttattttagcatgtaacgtctcacctgctgctccag
tgtcatcttagttatggtgccttagcacagtaattaaaacaaaacaactt
gtttttaatattttgggtattgtttcctgtgtgccttatattcttcattt
agttttttctctagttcttatttcccacgtttcttacttttttttaaaat
tttttttatttcgagacaagagcta
gaattcatttctgggtggtcaatttgattccattgatctacctgcatttc
tctgtaccaatatgatgcacttttatcactattgctctgtaatacagctc
agcgcagggatgatgattctcatagaagttcttagatggttgaagatagt
ttttgctatcctggaattctggttattccaaatgaatttgaaaattgctc
tttttaactctatgaagaattgagttggaattttgatgggaatttcattg
aatctgtagattgctttcggcaagatatccatttttactatagtaatcct
accaatccatgagcatgggagatctttctcagcccatttatcctttgagt
agaggaaggctactgatttatttgagttaattttatatccagtcactttg
ctgaagttgtttatcaagtttaggagttctctggttgaatttttgggtca
cttaagtgtactatcatatcatctgcaaaaggtgatattttgacttcttc
ctttctagtgtgtatccctttgatctccttttgttgtctaattactctgg
ctagtacttctagtactatactgtacaggtagggagagagtgaaaaacct
tggttagtccctgattttagtagaattccttcaagtttctctacatatag
tttgatgttggctagtggttttctgtatattgcttttactatgttcaagt
atgtgccttggattcatgattttttcaagacatttttcatgaagggtgtt
gatttttttcatatacattttcagcatctaatgaaataattgtttttttt
ctttcagtttgtttatatagtgaattatgttatggatttttgtatattga
accatccctgcatccctgggatgaagcctgcttgttcatgatagatgatt
gttttggtgtgttctcagatttgggtttgtaagaattttattgagtaatt
tacatttgatatttcataagtgaaattgggtctgaagttcttctttgtga
catcctttgtgtggtttagggtaataagaataatgtggctttgtagaacc
gacttggggaagcatcccttctggtttcctattttgtggcatcatataga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42703791_42704811
seq2: B6Ng01-074C24.b_96_1113 (reverse)

seq1  TAGCTCTTGTCTCCAAAATAAAAAAATTTTTAAAAAAAAAGTAAGAAAGG  50
      ||||||||||||| |||  |||||||||||  |||||||||||||||| |
seq2  TAGCTCTTGTCTCGAAATAAAAAAAATTTT--AAAAAAAAGTAAGAAACG  48

seq1  TGGGAAATTAGGAACTAGAGAAAAAATTAAATGAAGAATATAAGGCACAC  100
      ||||||| || ||||||||||||||| |||||||||||||||||||||||
seq2  TGGGAAA-TAAGAACTAGAGAAAAAACTAAATGAAGAATATAAGGCACAC  97

seq1  AGGAAACAATTACCAAAATATTAAAAACAAGTTGTTTTGTTTTAATTACT  150
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAATACCCAAAATATTAAAAACAAGTTGTTTTGTTTTAATTACT  147

seq1  GTGCTAAGGCACCATAACTAAGATGACACTGGAGCAGCAGGTGAGACGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAGGCACCATAACTAAGATGACACTGGAGCAGCAGGTGAGACGTT  197

seq1  ACATGCTAAAATAACAACAACAGGAAGAGAAAGAGAGATTAGGCCTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTAAAATAACAACAACAGGAAGAGAAAGAGAGATTAGGCCTGGTG  247

seq1  TGGGCTTACTCACCTCCTCCAACAAGGCCACATCTCCTAATTCTTCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTACTCACCTCCTCCAACAAGGCCACATCTCCTAATTCTTCCCAA  297

seq1  AACCATTCCACTAACTGGAAACAAGAATCCAAGCGCATGAGCCTATGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCCACTAACTGGAAACAAGAATCCAAGCGCATGAGCCTATGGGG  347

seq1  AGCATTCTACTTCAAACTGCCACATAAATAAGCCACTTGGATCAGGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTACTTCAAACTGCCACATAAATAAGCCACTTGGATCAGGTGTG  397

seq1  GTCATATGCAGCTATCATTCTAGCACTTGGAAGAATGAAGTGGGGATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGCAGCTATCATTCTAGCACTTGGAAGAATGAAGTGGGGATGGG  447

seq1  GTGGCAGGTATCAGGTTGTATTTTAGTCTGAGTTTGAGGCTAGCTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGTATCAGGTTGTATTTTAGTCTGAGTTTGAGGCTAGCTTTGGT  497

seq1  CATATAGTAGAACACTGTGTCAAGAAAATAGCAAATAAGTAAGTAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGTAGAACACTGTGTCAAGAAAATAGCAAATAAGTAAGTAAGTAA  547

seq1  ACCAAACATTAAGTGTAAATAGATTTAAGCACTTTAAGCAAAAGGCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACATTAAGTGTAAATAGATTTAAGCACTTTAAGCAAAAGGCAATA  597

seq1  ACAGAATATAAAACCAGCAATATGCTAGCTAATACACTGATACAATGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATATAAAACCAGCAATATGCTAGCTAATACACTGATACAATGATA  647

seq1  CAAGGTTTTTTTAAAAGATGAGGAAAGGCATATACTGTGAAGACATTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTTTTTAAAAGATGAGGAAAGGCATATACTGTGAAGACATTAAT  697

seq1  GGTGTAAATGCTGTACGCCCATATTAGTACCAGAAACAAACTTTATGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAATGCTGTACGCCCATATTAGTACCAGAAACAAACTTTATGGGG  747

seq1  AAAATGTCAGTAAAGACAGGGAGGATTTTTAAAATAATGAAGTATTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCAGTAAAGACAGGGAGGATTTTTAAAATAATGAAGTATTCAAG  797

seq1  AATACTTCAATTACCAATTACCAATATGTACAGACAACAGAAAAGTACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCAATTACCAATTACCAATATGTACAGACAACAGAAAAGTACTA  847

seq1  AAATTCATAAAAGAAAAGCTGATAGAACTGAAAATATGAACAATTGTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATAAAAGAAAAGCTGATAGAACTGAAAATATGAACAATTGTTGA  897

seq1  ATAACAATTATAGGCTTAAATGTAATCCCTCAAAAACAAATTTTAAAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATTATAGGCTTAAATGTAATCCCTCAAAAACAAATTTTAAAAAC  947

seq1  TAAGCAGAAATATTCTACTAATATATGACTTAATACCACATAATACATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGAAATATTCTACTAATATATGACTTAATACCACATAATACATAT  997

seq1  ATCAGGACAACTCATATCTAT  1021
      |||||||||||||||||||||
seq2  ATCAGGACAACTCATATCTAT  1018