BAC Information

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BAC

Clone NameB6Ng01-074N23
ChromosomeX (Build37)11 (Build37)
Map Location 98,219,056 - 98,219,59440,702,376 - 40,703,334
singlet/doubletsingletsinglet
Overlap geneTex11
Upstream geneEda, Dgat2l4, Otud6a, Igbp1, LOC668257, Dgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4, Gdpd2, Dlg3
Downstream geneLOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074N23.bB6Ng01-074N23.g
ACCDH891602DH891603
length527992
definitionDH891602|Mus musculus domesticus DNA, BAC clone: B6Ng01-074N23, 5' end.DH891603|Mus musculus domesticus DNA, BAC clone: B6Ng01-074N23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,219,056 - 98,219,594)(40,702,376 - 40,703,334)
sequence
gaattctcttttgtttgtattataaaattttttttcttttttttaattag
gtattttcctcatttacatttccaatgctatcccaaaagtcccccatacc
cactcccccactgccctacccaccccctccccctttttggccctggcatt
cccctgtactggggcatataaagtttgcaagtccaaagggcctctctttc
cagtgatggctgactaggccatcttttgatacatatgcagttagagacaa
gagctccggcatactggttagttcatattgttgttccacctatagggttg
cagttccctttagttccttgggtgctttctctagctcctccattgggggc
cctgtgatctatccagtagccgactgtgatcatccacttctgtgtttgct
aagccctggtatagtctcactgagagagctatatctgggtcctttcatga
aaatcttgctagtgtatgcaatggtgtcagcgtttggaagctgattatgg
gatggatccctagatgtggcaatcact
gaattctttgtctagctctgagcctcattttttgatggggttattttatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggatagataaagaccatttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttttagattctctatgactaatgtctttataaaaacaga
tgacattgaagaaaagcgtcaaaggggagatcctccaagtatgactggag
cagaggcaacttgctgaagctgcaaccaacggccttcaaggaattttggc
aaccacagaaattaagggagggatgagggccttttactccagagccttca
aaggaagcaaaggccaacggataccatggattcagaattctacattccag
aatttagagaaaatgagtttctgttatttgaagacactggcatcttttga
tttgctgtggaagccccagagatctaatgtataccatagaagggaattac
tgttgaaaagcaaaatggcagttgggtatcaactcagaaatttaaagcac
cagtgagggggtataaagagagaaggtgttacccaccacaacatacttac
ttattgttgcacactctaaacgtcttatccttggtttctgagattaaaat
agaaaaggaataaaattgtctatttcttctctgtgccttactcttttgat
gaatcaaattatggaaaggggatatttttgtttcttgatccagttttata
atccatatacagttgtgagaaactctaaacagttttggcaacaacatttg
tcatctatatttacggccccatcttagctatcacgtgtgaatactgcaga
gtattttgaaagtgtgagtatgatgagaagtgcatcatgatctgaatcag
acatactgatatgaattttccatgattaccccttgccatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_98219056_98219594
seq2: B6Ng01-074N23.b_77_566 (reverse)

seq1  TGATTGCCATATCCAGAGATCCATCCCATGATCAGCTTCCAAACGCTGAC  50
      ||||||||| ||| || |||||||||||| ||||||||||||||||||||
seq2  TGATTGCCACATCTAGGGATCCATCCCATAATCAGCTTCCAAACGCTGAC  50

seq1  ACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTG  100
      ||||||||||||||||||||||||||  ||||||||||||||||||||| 
seq2  ACCATTGCATACACTAGCAAGATTTTCATGAAAGGACCCAGATATAGCTC  100

seq1  TCTCTTGTGAGACTATGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCA  150
      ||||  |||||||||| ||||||| ||||||||||||||||||||| |||
seq2  TCTC-AGTGAGACTATACCAGGGCTTAGCAAACACAGAAGTGGATGATCA  149

seq1  CAGTCAGCTATTGAATGGACCACAGGGCCCCCAATGGAGGAACTAGAGAA  200
      ||||| |||| || || || ||||||||||||||||||||| ||||||||
seq2  CAGTCGGCTACTGGATAGATCACAGGGCCCCCAATGGAGGAGCTAGAGAA  199

seq1  AGCACCCAAGGAACTAAAGGGAACTGCAACCCTATAGGTGGAACAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAAGGAACTAAAGGGAACTGCAACCCTATAGGTGGAACAACAAT  249

seq1  ATGAACTAAGCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATGTATCA  300
      ||||||||| |||||  |||||||||||||||||| ||||||||||||||
seq2  ATGAACTAACCAGTATGCCGGAGCTCTTGTCTCTAACTGCATATGTATCA  299

seq1  AAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGC  350
      ||||||||||||||| |||||||||| |||||||||||| ||||||||||
seq2  AAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAGGCCCTTTGGACTTGC  349

seq1  AAACTTTATATGCCCCAGTACAGGGGAATGCCAGCGCCAAAAAGGGGGAG  400
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGGGGGAG  399

seq1  TGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATA  450
       |||||||||||| |||||||  | ||||||||||||||||||||| |||
seq2  GGGGTGGGTAGGGCAGTGGGG--GAGTGGGTATGGGGGACTTTTGGGATA  447

seq1  GTATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAGATGAAAAAAAG  500
      | ||||||||||||||||||  |||||||||||       | ||||||||
seq2  GCATTGGAAATGTAAATGAGGAAAATACCTAAT-------TAAAAAAAAG  490

seq1  GAAATGTAAATGAAGAAAATACCTAATTAATTAAAAAAG  539
                                             
seq2  ---------------------------------------  490

seq1: chr11_40702376_40703334
seq2: B6Ng01-074N23.g_97_1060

seq1  TTTTTAATGGGGTTATTTTATTTTCTGGAGTCCACCTTCTTGAGTTCTTT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATGGGGTTATTTTATTTTCTGGAGTCCACCTTCTTGAGTTCTTT  50

seq1  ATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGATAAAGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGATAAAGACCA  100

seq1  TTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCC  150

seq1  TTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTTTAGATTCTCTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTTTAGATTCTCTATGA  200

seq1  CTAATGTCTTTATAAAAACAGATGACATTGAAGAAAAGCATCAGAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  CTAATGTCTTTATAAAAACAGATGACATTGAAGAAAAGCGTCAAAGGGGA  250

seq1  GATCCTCCAAGTATGACTGGAGCAGAGGCAACTTGCTGAAGCTGCAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCCAAGTATGACTGGAGCAGAGGCAACTTGCTGAAGCTGCAACCA  300

seq1  ACGGCCTTCAAGGAATTTTGGCAACCACAGAAATTAAGGGAGGGATGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCTTCAAGGAATTTTGGCAACCACAGAAATTAAGGGAGGGATGAGG  350

seq1  GCCTTTTACTCCAGAGCCTTCAGAGGAAGCAAAGGCCAACGGATACCATG  400
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCTTTTACTCCAGAGCCTTCAAAGGAAGCAAAGGCCAACGGATACCATG  400

seq1  GATTCAGAATTCTACATTCCAGAATTTAGAGAAAATGAGTTTCTGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGAATTCTACATTCCAGAATTTAGAGAAAATGAGTTTCTGTTATT  450

seq1  TGAAGACACTGGCATCTTTTGATTTGCTGTGGAAGCCCCAGAGATCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACTGGCATCTTTTGATTTGCTGTGGAAGCCCCAGAGATCTAAT  500

seq1  GTATACCATAGAAGGGAATTACTGTTGAAAAGCAAAATGGCAGTTGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCATAGAAGGGAATTACTGTTGAAAAGCAAAATGGCAGTTGGGTA  550

seq1  TCAACTCAGAAATTTAAAGCACCAGTGAGGGGGTATAAAGAGAGAAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCAGAAATTTAAAGCACCAGTGAGGGGGTATAAAGAGAGAAGGTG  600

seq1  TTACCCACCACAACATACTTACTTATTGTTACACACTCTAAACTTCTTAT  650
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TTACCCACCACAACATACTTACTTATTGTTGCACACTCTAAACGTCTTAT  650

seq1  CCTTGGTTTCTTAGATTAAAATAGAAAAGGAATAAAATTGTCTATTTCTT  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTTCTGAGATTAAAATAGAAAAGGAATAAAATTGTCTATTTCTT  700

seq1  CTCTGTGCCTTACTCTTTTGATGAATCAAATTATGGAAAGGGGATATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCCTTACTCTTTTGATGAATCAAATTATGGAAAGGGGATATTTT  750

seq1  TGTTTCTTGATCCAGTTTTATAATCCATATACAGTTGTGAGAAACTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTGATCCAGTTTTATAATCCATATACAGTTGTGAGAAACTCTAA  800

seq1  ACAGTTTTGGCAACAACATTTGTCATCTTTATTTTAGGCCCCATCTTAGT  850
      |||||||||||||||||||||||||||| |||||  ||||||||||||| 
seq2  ACAGTTTTGGCAACAACATTTGTCATCTATATTTACGGCCCCATCTTAGC  850

seq1  TATTACGTGTGAATATTGCAGAGTATTTTGAAGGTGTGTGTATG-TGAGA  899
      ||| ||||||||||| |||||||||||||||| ||||| ||||| |||||
seq2  TATCACGTGTGAATACTGCAGAGTATTTTGAAAGTGTGAGTATGATGAGA  900

seq1  AGTTCATCGT-ATCTGAATCAGAGATACTGATTTGCATTT--CCTTATTA  946
      ||| |||| | |||||||||||| |||||||| || ||||  | | ||||
seq2  AGTGCATCATGATCTGAATCAGACATACTGATATGAATTTTCCATGATTA  950

seq1  -CCTTTGCCATACT  959
       || ||||||||||
seq2  CCCCTTGCCATACT  964