BAC Information

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BAC

Clone NameB6Ng01-075J14
Chromosome11 (Build37)
Map Location 57,835,378 - 57,969,986
singlet/doubletdoublet
Overlap geneLarp1, LOC676527, LOC667947, Cnot8, Gemin5
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605
Downstream geneMrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075J14.bB6Ng01-075J14.g
ACCDH892113DH892114
length1,100898
definitionDH892113|Mus musculus domesticus DNA, BAC clone: B6Ng01-075J14, 5' end.DH892114|Mus musculus domesticus DNA, BAC clone: B6Ng01-075J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,968,893 - 57,969,986)(57,835,378 - 57,836,262)
sequence
gaattcccctttatcttgaacttttgacccttttacatccaccttccacg
tggtgaagttacagattcgagccaccaggtgtggtttatgcggtactggg
attgaagccatgatgcatgggaagcaggggctctgccaactgaactgtgg
ccggagcccctgatacagggcttcagttttctcctgcaccccggggccgt
gaagtccacggcttgtcaggcagcaattcttgctattccttgtggaggcc
atgtgtatccttccagagttgtaagaggtagttagctgtgctatgacttg
gggacatggcaagcctgaactctgtagcactgattggctagcaggacgct
gaatttattaaacattcctggaagtaaatgtgcccccagatcactttgag
gcagtgcagatttctttcctcacaagagaagcttcttccagctccctctg
aaagaattgttacattaaatcccatctgagacacttaattctagctgcgc
agtgatgtcctgagcctttgatcccagcacgtgggaggcagagacaggtg
gactcccaagttcaagggacagccaaggctatacagataaaccctatcta
caaacaaacaaacaaaaagaaatatctttactttccttaggtaaaatgtt
gggacatggccaccctggagtgttgctggacattgccttctcttggaggt
tttgcctacagcctggcctttttctcctgtggacgtgggctcccctggcc
ataggtgttggggacggcatgatccgggtgtggaatacaactctccataa
agaacaactacgacgtgaaaaacttctggcaaggagtcaagtccaatgtc
acagcggtaaggacgcttccgagagattgttcagattcttcttagacact
gcccactttgttgtgagttctggaaatcagtgggatgtttaaaataaagc
catgacttctcattggtcaaagctcgaaattgttctagaatttttcttcc
agagtgctatgcacttgacttaaatgtgtgaggtatgtgggtttagctgg
gtgtgtgtggggtgtgccgtgtctgttgctctccaggggaaggctagttc

gaattctgccgtgcactagatagagaggcctggcctcattgtttacattc
ccacagggaagcagtgaactaccaattttcatttcctgcctaacatcacc
tcccaaaacagcagcttaaagaatcagccatcttgagggtgtggaataca
gtcctgttatcccagctactctggaatcaattttcatagggaggtattgg
gcagaggctgttaaggtgttggcatgatcagaaggatcatcctagccaga
gtgcagtcaggatcctccaaggacagaaatggccagtgtagatgaggagg
cctcagctttacaggggctctgcactctgttgtggaggctggagagcagt
ggctgcagcagatgctttgagattcctcagatccgtggagagtgttgagt
ggggagcaaggtggaagcagaaaggcctgcaggaaatgcaggtaaatcag
agtagaagataaggagctacttgtagctggacgttcattctctgcttcct
ttctctcctcccccatttttgatacttagtaacaaaaaatgttccagaca
aggattgagccaaaattacaagattaagtaagggttaaagttgtttttag
ctctgtttcttaagagacttttaagcagtcagaaagttgttttgtttggt
ctaaaaacaggacttgaaatcatggtattcaaagtgagatttcaacagaa
aatttttctttttgttttctgtcaaagcagaatgtaatcaggattttcat
tttgtacctgttaagttaaggaatatgtgttgggcctggagaagaatgtt
caaccagttaacaagcacttgctattcttgcagaggaccccagatgtgtt
tcttgtacccactaagggctggttcagggtctttgaaactttagctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57968893_57969986
seq2: B6Ng01-075J14.b_47_1146 (reverse)

seq1  GAACTAGCC-TCCCCTGACAGACAGACAGACACAGACACA-CACACACAC  48
      ||||||||| |||||||  |||   |||||||| | |||| | |||||||
seq2  GAACTAGCCTTCCCCTG-GAGAGCAACAGACAC-GGCACACCCCACACAC  48

seq1  ACCCAGCTGAACCCACATACCTCACACATTTAAGTCAAGTGCATAGCACT  98
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTAAACCCACATACCTCACACATTTAAGTCAAGTGCATAGCACT  98

seq1  CTGTGAAGAAAAATTCTAGAAC-ATTTCGAGCTTTGA-CAATGAGAAGTT  146
      ||| |||||||||||||||||| |||||||||||||| |||||||||| |
seq2  CTG-GAAGAAAAATTCTAGAACAATTTCGAGCTTTGACCAATGAGAAG-T  146

seq1  CAT-GCTTTATGTTTAAACAT-CCACTGATTTCCAGAACTCACA--CAAG  192
      ||| ||||||| ||||||||| ||||||||||||||||||||||   |||
seq2  CATGGCTTTAT-TTTAAACATCCCACTGATTTCCAGAACTCACAACAAAG  195

seq1  TGGGCAGTGTCTAAGAAGAATCTGAACAATCTCTCGGAAGCGTCCTTACC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTGTCTAAGAAGAATCTGAACAATCTCTCGGAAGCGTCCTTACC  245

seq1  GCTGTGACCTTGGACTTGACTCCTTGCCAGAAGTTTTTCACGTCGTAGTT  292
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACATTGGACTTGACTCCTTGCCAGAAGTTTTTCACGTCGTAGTT  295

seq1  GTTCTTTATGGAGAG-TGTATTCCACACCCGGATCATGCCGTCCCCAACA  341
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTCTTTATGGAGAGTTGTATTCCACACCCGGATCATGCCGTCCCCAACA  345

seq1  CCTATGGCCA-GGGAGCCCACGTCCACAGGAG-AAAAGGCCAGGCTGTAG  389
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  CCTATGGCCAGGGGAGCCCACGTCCACAGGAGAAAAAGGCCAGGCTGTAG  395

seq1  GCAAAACCTCCAAGAGAAGGCAATGTCCAGCAACACTCCAGGGTGGCCAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCTCCAAGAGAAGGCAATGTCCAGCAACACTCCAGGGTGGCCAT  445

seq1  GTCCCAACATTTTACCTAAGGAAAGTAAAGATATTTCTTTTTGTTTGTTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAACATTTTACCTAAGGAAAGTAAAGATATTTCTTTTTGTTTGTTT  495

seq1  GTTTGTAGATAGGGTTTATCTGTATAGCCTTGGCTGTCCCTTGAACTTGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAGATAGGGTTTATCTGTATAGCCTTGGCTGTCCCTTGAACTTGG  545

seq1  GAGTCCACCTGTCTCTGCCTCCCACGTGCTGGGATCAAAGGCTCAGGACA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCACCTGTCTCTGCCTCCCACGTGCTGGGATCAAAGGCTCAGGACA  595

seq1  TCACTGCGCAGCTAGAATTAAGTGTCTCAGATGGGATTTAATGTAACAAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCGCAGCTAGAATTAAGTGTCTCAGATGGGATTTAATGTAACAAT  645

seq1  TCTTTCAGAGGGAGCTGGAAGAAGCTTCTCTTGTGAGGAAAGAAATCTGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGAGGGAGCTGGAAGAAGCTTCTCTTGTGAGGAAAGAAATCTGC  695

seq1  ACTGCCTCAAAGTGATCTGGGGGCACATTTACTTCCAGGAATGTTTAATA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCAAAGTGATCTGGGGGCACATTTACTTCCAGGAATGTTTAATA  745

seq1  AATTCAGCGTCCTGCTAGCCAATCAGTGCTACAGAGTTCAGGCTTGCCAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCGTCCTGCTAGCCAATCAGTGCTACAGAGTTCAGGCTTGCCAT  795

seq1  GTCCCCAAGTCATAGCACAGCTAACTACCTCTTACAACTCTGGAAGGATA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAAGTCATAGCACAGCTAACTACCTCTTACAACTCTGGAAGGATA  845

seq1  CACATGGCCTCCACAAGGAATAGCAAGAATTGCTGCCTGACAAGCCGTGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCCTCCACAAGGAATAGCAAGAATTGCTGCCTGACAAGCCGTGG  895

seq1  ACTTCACGGCCCCGGGGTGCAGGAGAAAACTGAAGCCCTGTATCAGGGGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACGGCCCCGGGGTGCAGGAGAAAACTGAAGCCCTGTATCAGGGGC  945

seq1  TCCGGCCACAGTTCAGTTGGCAGAGCCCCTGCTTCCCATGCATCATGGCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCCACAGTTCAGTTGGCAGAGCCCCTGCTTCCCATGCATCATGGCT  995

seq1  TCAATCCCAGTACCGCATAAACCACACCTGGTGGCTCGAATCTGTAACTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCCAGTACCGCATAAACCACACCTGGTGGCTCGAATCTGTAACTT  1045

seq1  CACCACGTGGAAGGTGGATGTAAAAGGGTCAAAAGTTCAAGATAAAGGGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGTGGAAGGTGGATGTAAAAGGGTCAAAAGTTCAAGATAAAGGGG  1095

seq1  AATTC  1094
      |||||
seq2  AATTC  1100

seq1: chr11_57835378_57836262
seq2: B6Ng01-075J14.g_68_965

seq1  GAATTCTGCCGTGCACTAGATAGAGAGGCCTGGCCTCATTGTTTACATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCGTGCACTAGATAGAGAGGCCTGGCCTCATTGTTTACATTC  50

seq1  CCACAGGGAAGCAGTGAACTACCAATTTTCATTTCCTGCCTAACATCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGAAGCAGTGAACTACCAATTTTCATTTCCTGCCTAACATCACC  100

seq1  TCCCAAAACAGCAGCTTAAAGAATCAGCCATCTTGAGGGTGTGGAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAACAGCAGCTTAAAGAATCAGCCATCTTGAGGGTGTGGAATACA  150

seq1  GTCCTGTTATCCCAGCTACTCTGGAATCAATTTTCATAGGGAGGTATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTTATCCCAGCTACTCTGGAATCAATTTTCATAGGGAGGTATTGG  200

seq1  GCAGAGGCTGTTAAGGTGTTGGCATGATCAGAAGGATCATCCTAGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCTGTTAAGGTGTTGGCATGATCAGAAGGATCATCCTAGCCAGA  250

seq1  GTGCAGTCAGGATCCTCCAAGGACAGAAATGGCCAGTGTAGATGAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTCAGGATCCTCCAAGGACAGAAATGGCCAGTGTAGATGAGGAGG  300

seq1  CCTCAGCTTTACAGGGGCTCTGCACTCTGTTGTGGAGGCTGGAGAGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTTTACAGGGGCTCTGCACTCTGTTGTGGAGGCTGGAGAGCAGT  350

seq1  GGCTGCAGCAGATGCTTTGAGATTCCTCAGATCCGTGGAGAGTGTTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGCAGATGCTTTGAGATTCCTCAGATCCGTGGAGAGTGTTGAGT  400

seq1  GGGGAGCAAGGTGGAAGCAGAAAGGCCTGCAGGAAATGCAGGTAAATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCAAGGTGGAAGCAGAAAGGCCTGCAGGAAATGCAGGTAAATCAG  450

seq1  AGTAGAAGATAAGGAGCTACTTGTAGCTGGACGTTCATTCTCTGCTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGATAAGGAGCTACTTGTAGCTGGACGTTCATTCTCTGCTTCCT  500

seq1  TTCTCTCCTCCCCCA-TTTTGATACTTAGTAACAAAAAATGTTCCAGACA  549
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTCCCCCATTTTTGATACTTAGTAACAAAAAATGTTCCAGACA  550

seq1  AGGATTGAGCCAAAATTACAAGATTAAGTAAGGGTTAAAGTTGTTTTTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGAGCCAAAATTACAAGATTAAGTAAGGGTTAAAGTTGTTTTTAG  600

seq1  CTCTGTTTCTTAAGAGAC-TTTAAGCAGTCAGAAAGTTGTTTTGTTTGGT  648
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCTGTTTCTTAAGAGACTTTTAAGCAGTCAGAAAGTTGTTTTGTTTGGT  650

seq1  CT-AAAACAGGACTTG-AATCATGGTATTC-AAGTGAGATTTCAACAGAA  695
      || ||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  CTAAAAACAGGACTTGAAATCATGGTATTCAAAGTGAGATTTCAACAGAA  700

seq1  AATTTTTC-TTTTGTTTTCTGTCAAAGCAGAATGTAATCAGGATTTTCA-  743
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  AATTTTTCTTTTTGTTTTCTGTCAAAGCAGAATGTAATCAGGATTTTCAT  750

seq1  TTTGTACCTG-TAAGTT-AGGAA-ATGTG-TGGGCCTGGAGAAGAAGGTT  789
      |||||||||| |||||| ||||| ||||| |||||||||||||||| |||
seq2  TTTGTACCTGTTAAGTTAAGGAATATGTGTTGGGCCTGGAGAAGAATGTT  800

seq1  CAACCAGTTAAC-AGCACTTGCTATTCTTGCAGAGGACCCCAGATGTGTT  838
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAACCAGTTAACAAGCACTTGCTATTCTTGCAGAGGACCCCAGATGTGTT  850

seq1  TCTTGTACCCACT-AGGGCTGGTTCATGGTCTTTGTAACTTTAGCTCC  885
      ||||||||||||| |||||||||||| |||||||| ||||||||||||
seq2  TCTTGTACCCACTAAGGGCTGGTTCAGGGTCTTTGAAACTTTAGCTCC  898