BAC Information

Click to search

BAC

Clone NameB6Ng01-075M07
Chromosome11 (Build37)
Map Location 114,474,166 - 114,656,193
singlet/doubletdoublet
Overlap geneRpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik
Upstream geneSstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik
Downstream geneGpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075M07.bB6Ng01-075M07.g
ACCDH892231DH892232
length991250
definitionDH892231|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M07, 5' end.DH892232|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,474,166 - 114,474,961)(114,655,944 - 114,656,193)
sequence
gaattctcttgactgatgattcgtgtgggagaatccggcccactgtgggc
ggcaccactcctattcggttgtcctgagctgtataaaaaggctagctgag
caagccagggagaaaactatgaactgtgacctagaagtgttaagtgaaat
aagccctttttcctcccctaacttgtttttgttcagagcattttctcaca
gcaatacactggaactagaatagctgattaccctgtttcttttcttttct
ttgcttttctttttcttttcttttcttttttatgttatggttctttattt
cctttttttaaaaaaattagatatttcttttatttacatttcaaatgtta
tccctttcctggtctccctccgaaagtcccctcccttttccttccccctc
cccctgcttaccaacccactcactcctgcttcctggccctggcattccct
tattggggcatagagccttcacaggaccaagagcctctcctcccattgat
gaccaactaggccatcctctgctgcatatgtagctggagccatgagtccc
atcatgtgtactctttggttggtggtttagtccctgggagctctggaggt
aactggttagttcatattgttgttcctcctatggagctgtaaaccccttc
aactccttgggtcctttctttagttccttcattgaggatcctgtgctcag
tccaatggatggctgtgagcatccacttctgtatttgtgaggcactggca
gagcctctcaatgagacagctatatcaggctcctgtcagcaagcacttgt
tggcctccacaatagtgtctgggtttggtgactgtgtatgggatggatcc
ccaagtggggcagtctctggctggtcattccttcagtctcagctccacat
tttgtctctgtaactctttgaaaagtatatattcccacttcttttttttt
agagaagatttatttattataaaatagtacactgtagctgt
aaggctagcctgaactataagagaccccatctcaaaaaactaaaaagaga
acaaacaaacaaacaaagacagaaagaaacgctatgcctgctgtccctgg
ccctgagctccacctggtcattcccgcccaggtctttagggctggctgta
ttcctttgtctctggctggttccaggctgctcacttgtgcatttatttat
ttttaaaattgatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114474166_114474961
seq2: B6Ng01-075M07.b_43_838

seq1  GAATTCTCTTGACTGATGATTCGTGTGGGAGAATCCGGCCCACTGTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGACTGATGATTCGTGTGGGAGAATCCGGCCCACTGTGGGC  50

seq1  GGCACCACTCCTATTCGGTTGTCCTGAGCTGTATAAAAAGGCTAGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCACTCCTATTCGGTTGTCCTGAGCTGTATAAAAAGGCTAGCTGAG  100

seq1  CAAGCCAGGGAGAAAACTATGAACTGTGACCTAGAAGTGTTAAGTGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGGGAGAAAACTATGAACTGTGACCTAGAAGTGTTAAGTGAAAT  150

seq1  AAGCCCTTTTTCCTCCCCTAACTTGTTTTTGTTCAGAGCATTTTCTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTTTTTCCTCCCCTAACTTGTTTTTGTTCAGAGCATTTTCTCACA  200

seq1  GCAATACACTGGAACTAGAATAGCTGATTACCCTGTTTCTTTTCTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACACTGGAACTAGAATAGCTGATTACCCTGTTTCTTTTCTTTTCT  250

seq1  TTGCTTTTCTTTTTCTTTTCTTTTCTTTTTTATGTTATGGTTCTTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTCTTTTTCTTTTCTTTTCTTTTTTATGTTATGGTTCTTTATTT  300

seq1  CCTTTTTTTAAAAAAATTAGATATTTCTTTTATTTACATTTCAAATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTAAAAAAATTAGATATTTCTTTTATTTACATTTCAAATGTTA  350

seq1  TCCCTTTCCTGGTCTCCCTCCGAAAGTCCCCTCCCTTTTCCTTCCCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCTGGTCTCCCTCCGAAAGTCCCCTCCCTTTTCCTTCCCCCTC  400

seq1  CCCCTGCTTACCAACCCACTCACTCCTGCTTCCTGGCCCTGGCATTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTTACCAACCCACTCACTCCTGCTTCCTGGCCCTGGCATTCCCT  450

seq1  TATTGGGGCATAGAGCCTTCACAGGACCAAGAGCCTCTCCTCCCATTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGGCATAGAGCCTTCACAGGACCAAGAGCCTCTCCTCCCATTGAT  500

seq1  GACCAACTAGGCCATCCTCTGCTGCATATGTAGCTGGAGCCATGAGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACTAGGCCATCCTCTGCTGCATATGTAGCTGGAGCCATGAGTCCC  550

seq1  ATCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGAGGT  600

seq1  AACTGGTTAGTTCATATTGTTGTTCCTCCTATGGAGCTGTAAACCCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTAGTTCATATTGTTGTTCCTCCTATGGAGCTGTAAACCCCTTC  650

seq1  AACTCCTTGGGTCCTTTCTTTAGTTCCTTCATTGAGGATCCTGTGCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTGGGTCCTTTCTTTAGTTCCTTCATTGAGGATCCTGTGCTCAG  700

seq1  TCCAATGGATGGCTGTGAGCATCCACTTCTGTATTTGTGAGGCACTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGGATGGCTGTGAGCATCCACTTCTGTATTTGTGAGGCACTGGCA  750

seq1  GAGCCTCTCAATGAGACAGCTATATCAGGCTCCTGTCAGCAAGCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTCAATGAGACAGCTATATCAGGCTCCTGTCAGCAAGCAC  796

seq1: chr11_114655944_114656193
seq2: B6Ng01-075M07.g_76_325 (reverse)

seq1  CACACACACACACACACACACACACACACACACACAAATCAATTTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACAAATCAATTTTAAAA  50

seq1  ATAAATAAATGCACAAGTGAGCAGCCTGGAACCAGCCAGAGACAAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATGCACAAGTGAGCAGCCTGGAACCAGCCAGAGACAAAGGAA  100

seq1  TACAGCCAGCCCTAAAGACCTGGGCGGGAATGACCAGGTGGAGCTCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAGCCCTAAAGACCTGGGCGGGAATGACCAGGTGGAGCTCAGGG  150

seq1  CCAGGGACAGCAGGCATAGCGTTTCTTTCTGTCTTTGTTTGTTTGTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACAGCAGGCATAGCGTTTCTTTCTGTCTTTGTTTGTTTGTTTGT  200

seq1  TCTCTTTTTAGTTTTTTGAGATGGGGTCTCTTATAGTTCAGGCTAGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTAGTTTTTTGAGATGGGGTCTCTTATAGTTCAGGCTAGCCTT  250